Wall clock time and date at job start Wed Apr 1 2020 00:31:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46796 * 2 1 4 4 H 1.08998 * 109.52253 * 305.07135 * 3 2 1 5 5 C 1.53163 * 109.48277 * 65.15195 * 3 2 1 6 6 N 1.46929 * 108.76702 * 174.59711 * 5 3 2 7 7 C 1.34780 * 120.63204 * 126.37081 * 6 5 3 8 8 O 1.21274 * 120.00040 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00006 * 180.02562 * 7 6 5 10 10 N 1.46500 * 109.47084 * 179.97438 * 9 7 6 11 11 C 1.46502 * 119.99400 * 90.00415 * 10 9 7 12 12 C 1.34767 * 120.00185 * 270.00107 * 10 9 7 13 13 O 1.21279 * 120.00291 * 0.02562 * 12 10 9 14 14 C 1.50709 * 120.00029 * 180.02562 * 12 10 9 15 15 O 1.42900 * 109.47024 * 179.97438 * 14 12 10 16 16 C 1.42901 * 113.99784 * 179.97438 * 15 14 12 17 17 C 1.46926 * 118.73935 * 306.38589 * 6 5 3 18 18 C 1.53190 * 108.77404 * 53.60800 * 17 6 5 19 19 C 1.53036 * 109.31618 * 305.36675 * 18 17 6 20 20 H 1.09007 * 109.46211 * 181.36516 * 19 18 17 21 21 N 1.46496 * 109.46261 * 301.34591 * 19 18 17 22 22 C 1.36945 * 119.99718 * 275.02605 * 21 19 18 23 23 H 1.07997 * 119.99756 * 359.97438 * 22 21 19 24 24 C 1.38805 * 119.99878 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00257 * 0.02562 * 24 22 21 26 26 Si 1.86803 * 119.99929 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.47187 * 179.97438 * 26 24 22 28 28 H 1.48494 * 109.47141 * 300.00154 * 26 24 22 29 29 H 1.48498 * 109.47018 * 60.00200 * 26 24 22 30 30 H 1.09004 * 109.46921 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47825 * 300.00260 * 1 2 3 32 32 H 1.09003 * 109.46842 * 60.00752 * 1 2 3 33 33 H 1.08992 * 109.47516 * 239.99693 * 2 1 3 34 34 H 1.09003 * 109.46842 * 119.99248 * 2 1 3 35 35 H 1.08990 * 109.59458 * 54.80996 * 5 3 2 36 36 H 1.09005 * 109.70423 * 294.44525 * 5 3 2 37 37 H 1.08997 * 109.46940 * 299.99965 * 9 7 6 38 38 H 1.09003 * 109.46875 * 59.99884 * 9 7 6 39 39 H 1.08995 * 109.47226 * 89.99960 * 11 10 9 40 40 H 1.09005 * 109.46583 * 209.99741 * 11 10 9 41 41 H 1.09004 * 109.47276 * 329.99555 * 11 10 9 42 42 H 1.08999 * 109.46910 * 300.00035 * 14 12 10 43 43 H 1.08997 * 109.47015 * 60.00039 * 14 12 10 44 44 H 1.09000 * 109.47340 * 180.02562 * 16 15 14 45 45 H 1.09001 * 109.47443 * 300.00395 * 16 15 14 46 46 H 1.09003 * 109.47246 * 60.00073 * 16 15 14 47 47 H 1.09001 * 109.58789 * 293.82762 * 17 6 5 48 48 H 1.08992 * 109.59131 * 173.39754 * 17 6 5 49 49 H 1.09006 * 109.49869 * 185.41218 * 18 17 6 50 50 H 1.09004 * 109.51931 * 65.33623 * 18 17 6 51 51 H 0.96996 * 120.00499 * 95.02336 * 21 19 18 52 52 H 0.97001 * 119.99885 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6048 1.9827 -0.8408 5 6 1.6381 2.1264 1.3103 6 7 2.2443 3.4641 1.3505 7 6 1.4846 4.5562 1.5670 8 8 0.2886 4.4399 1.7314 9 6 2.1212 5.9216 1.6049 10 7 1.0915 6.9337 1.8527 11 6 0.7597 7.3199 3.2265 12 6 0.4496 7.5096 0.8171 13 8 0.7240 7.1897 -0.3201 14 6 -0.6093 8.5513 1.0721 15 8 -1.1380 9.0081 -0.1744 16 6 -2.1555 10.0030 -0.0445 17 6 3.6944 3.5889 1.1499 18 6 4.0733 2.8883 -0.1586 19 6 3.5652 1.4451 -0.1256 20 1 3.8546 0.9371 -1.0456 21 7 4.1506 0.7477 1.0220 22 6 5.3882 0.1715 0.9146 23 1 5.9325 0.2310 -0.0163 24 6 5.9431 -0.4888 2.0021 25 7 5.2795 -0.5616 3.1365 26 14 7.6311 -1.2754 1.8553 27 1 7.9945 -1.9120 3.1467 28 1 7.6063 -2.3046 0.7852 29 1 8.6347 -0.2342 1.5176 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5138 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 1.9960 1.5375 2.1546 36 1 0.5528 2.2153 1.3606 37 1 2.8630 5.9545 2.4028 38 1 2.6058 6.1231 0.6496 39 1 1.3932 8.1521 3.5330 40 1 -0.2865 7.6220 3.2762 41 1 0.9253 6.4727 3.8921 42 1 -1.4105 8.1163 1.6695 43 1 -0.1703 9.3916 1.6099 44 1 -2.5050 10.2968 -1.0343 45 1 -2.9890 9.5976 0.5292 46 1 -1.7491 10.8733 0.4707 47 1 4.2201 3.1192 1.9813 48 1 3.9660 4.6429 1.0920 49 1 5.1575 2.8899 -0.2716 50 1 3.6193 3.4148 -0.9983 51 1 3.6616 0.6941 1.8580 52 1 5.6672 -1.0234 3.8963 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001276740391.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:31:51 Heat of formation + Delta-G solvation = -116.691977 kcal Electronic energy + Delta-G solvation = -31596.896869 eV Core-core repulsion = 27403.448556 eV Total energy + Delta-G solvation = -4193.448313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.69747 -40.75926 -39.21883 -38.36405 -36.51573 -35.89853 -35.36511 -33.40375 -31.48987 -30.99539 -29.98181 -28.85258 -27.43727 -26.73123 -25.83836 -25.20223 -25.02736 -22.19934 -21.48869 -20.33399 -19.63533 -19.23291 -18.52502 -18.37814 -17.76443 -17.29155 -17.02536 -16.67226 -16.47337 -16.11749 -16.03566 -15.58394 -15.50435 -15.35806 -14.92474 -14.78624 -14.51675 -14.36485 -14.11399 -13.96137 -13.87438 -13.62434 -13.40279 -13.15922 -13.08263 -13.02375 -12.84238 -12.80306 -12.64143 -12.38056 -12.33166 -12.16814 -12.11178 -11.84777 -11.60451 -11.46299 -11.15513 -11.11333 -10.92562 -10.80387 -10.76605 -9.76665 -9.60387 -8.90665 -7.86700 -5.12851 1.35704 1.51339 1.52324 1.55901 1.57978 1.66101 2.13272 2.61265 2.96696 3.45645 3.47934 3.54862 3.80794 3.85341 4.01459 4.05688 4.07858 4.14627 4.19673 4.22223 4.29483 4.33850 4.35818 4.42339 4.44704 4.50648 4.57640 4.58697 4.67787 4.72550 4.83013 4.86080 4.86915 4.91384 4.97941 5.03197 5.14698 5.17324 5.20738 5.29048 5.31400 5.38498 5.50136 5.61547 5.65208 5.99315 6.28214 6.34777 6.43136 7.02610 7.12640 7.42730 8.17651 8.42874 9.36165 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017144 B = 0.002631 C = 0.002469 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1632.809574 B =10638.509211 C =11338.746879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.104 4.104 3 C -0.093 4.093 4 H 0.074 0.926 5 C 0.128 3.872 6 N -0.601 5.601 7 C 0.494 3.506 8 O -0.580 6.580 9 C 0.100 3.900 10 N -0.598 5.598 11 C 0.071 3.929 12 C 0.507 3.493 13 O -0.574 6.574 14 C 0.051 3.949 15 O -0.410 6.410 16 C 0.025 3.975 17 C 0.119 3.881 18 C -0.145 4.145 19 C 0.173 3.827 20 H 0.044 0.956 21 N -0.722 5.722 22 C -0.227 4.227 23 H 0.073 0.927 24 C -0.071 4.071 25 N -0.967 5.967 26 Si 0.963 3.037 27 H -0.302 1.302 28 H -0.285 1.285 29 H -0.279 1.279 30 H 0.062 0.938 31 H 0.048 0.952 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.048 0.952 35 H 0.052 0.948 36 H 0.079 0.921 37 H 0.145 0.855 38 H 0.112 0.888 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.093 0.907 45 H 0.056 0.944 46 H 0.065 0.935 47 H 0.062 0.938 48 H 0.105 0.895 49 H 0.071 0.929 50 H 0.067 0.933 51 H 0.374 0.626 52 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.329 20.786 -0.186 23.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.142 4.142 3 C -0.113 4.113 4 H 0.092 0.908 5 C 0.005 3.995 6 N -0.333 5.333 7 C 0.282 3.718 8 O -0.460 6.460 9 C -0.026 4.026 10 N -0.331 5.331 11 C -0.070 4.070 12 C 0.296 3.704 13 O -0.453 6.453 14 C -0.028 4.028 15 O -0.329 6.329 16 C -0.071 4.071 17 C -0.003 4.003 18 C -0.185 4.185 19 C 0.065 3.935 20 H 0.062 0.938 21 N -0.363 5.363 22 C -0.359 4.359 23 H 0.091 0.909 24 C -0.263 4.263 25 N -0.619 5.619 26 Si 0.794 3.206 27 H -0.228 1.228 28 H -0.211 1.211 29 H -0.205 1.205 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.067 0.933 35 H 0.071 0.929 36 H 0.097 0.903 37 H 0.163 0.837 38 H 0.130 0.870 39 H 0.113 0.887 40 H 0.107 0.893 41 H 0.091 0.909 42 H 0.118 0.882 43 H 0.136 0.864 44 H 0.112 0.888 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.081 0.919 48 H 0.123 0.877 49 H 0.090 0.910 50 H 0.085 0.915 51 H 0.208 0.792 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -11.590 20.456 -0.930 23.529 hybrid contribution 0.811 -1.082 0.611 1.484 sum -10.780 19.373 -0.318 22.173 Atomic orbital electron populations 1.21781 0.94924 1.01947 1.01645 1.21331 0.95926 0.95140 1.01845 1.21640 0.96061 0.96449 0.97152 0.90755 1.21442 0.98319 0.82219 0.97511 1.48207 1.09092 1.06270 1.69756 1.21688 0.86987 0.87531 0.75608 1.90621 1.16344 1.87072 1.51968 1.21454 0.91000 0.83640 1.06544 1.47517 1.38731 1.38651 1.08206 1.22184 1.03137 1.02187 0.79522 1.21058 0.82369 0.82615 0.84353 1.90697 1.65865 1.64713 1.23980 1.22385 0.95760 0.96922 0.87737 1.87968 1.56700 1.59559 1.28685 1.23045 0.89706 0.90319 1.04035 1.21725 0.78296 1.01783 0.98512 1.22403 1.01596 0.97701 0.96838 1.20401 0.90788 0.91561 0.90782 0.93756 1.42534 1.18258 1.64246 1.11248 1.19508 0.94278 1.25376 0.96711 0.90864 1.25353 1.01723 1.03143 0.96097 1.69792 1.39554 1.49726 1.02783 0.85366 0.81056 0.78402 0.75822 1.22843 1.21144 1.20524 0.91915 0.93250 0.92318 0.92037 0.93340 0.92941 0.90279 0.83740 0.87046 0.88740 0.89277 0.90917 0.88170 0.86404 0.88806 0.92514 0.91657 0.91943 0.87652 0.91032 0.91468 0.79216 0.94370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.10 9.67 71.98 0.70 -3.40 16 2 C -0.10 -3.48 5.19 30.59 0.16 -3.32 16 3 C -0.09 -3.15 2.14 -10.72 -0.02 -3.17 16 4 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 5 C 0.13 4.49 5.03 86.35 0.43 4.92 16 6 N -0.60 -19.26 2.97 -818.98 -2.43 -21.69 16 7 C 0.49 15.53 7.77 87.66 0.68 16.21 16 8 O -0.58 -22.02 15.84 -3.01 -0.05 -22.06 16 9 C 0.10 2.29 4.23 85.63 0.36 2.65 16 10 N -0.60 -12.63 2.36 -851.13 -2.01 -14.64 16 11 C 0.07 0.82 10.24 127.77 1.31 2.13 16 12 C 0.51 13.27 7.75 87.66 0.68 13.95 16 13 O -0.57 -21.15 16.08 16.01 0.26 -20.90 16 14 C 0.05 0.88 4.97 71.24 0.35 1.23 16 15 O -0.41 -9.34 10.24 -129.94 -1.33 -10.67 16 16 C 0.02 0.30 11.01 113.37 1.25 1.54 16 17 C 0.12 3.54 6.08 86.36 0.53 4.07 16 18 C -0.14 -4.65 5.78 30.67 0.18 -4.47 16 19 C 0.17 6.48 2.53 45.02 0.11 6.60 16 20 H 0.04 1.72 8.08 -2.38 -0.02 1.70 16 21 N -0.72 -33.23 3.72 -322.81 -1.20 -34.43 16 22 C -0.23 -11.73 9.93 84.03 0.83 -10.90 16 23 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 24 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 25 N -0.97 -56.73 13.06 21.65 0.28 -56.45 16 26 Si 0.96 44.79 29.55 68.60 2.03 46.82 16 27 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 28 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 29 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 30 H 0.06 1.59 8.14 -2.39 -0.02 1.58 16 31 H 0.05 1.42 6.70 -2.39 -0.02 1.40 16 32 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.05 1.89 7.70 -2.39 -0.02 1.87 16 35 H 0.05 2.07 6.64 -2.39 -0.02 2.05 16 36 H 0.08 2.86 5.73 -2.38 -0.01 2.85 16 37 H 0.15 2.25 7.87 -2.39 -0.02 2.23 16 38 H 0.11 2.68 6.97 -2.39 -0.02 2.66 16 39 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 40 H 0.09 0.73 6.44 -2.38 -0.02 0.71 16 41 H 0.07 0.94 8.07 -2.38 -0.02 0.93 16 42 H 0.10 1.32 7.40 -2.39 -0.02 1.30 16 43 H 0.12 1.06 8.11 -2.39 -0.02 1.04 16 44 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 45 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 46 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 47 H 0.06 2.21 7.74 -2.39 -0.02 2.19 16 48 H 0.11 2.34 5.93 -2.39 -0.01 2.33 16 49 H 0.07 2.37 8.14 -2.38 -0.02 2.35 16 50 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 51 H 0.37 18.78 5.94 -92.71 -0.55 18.23 16 52 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 Total: -1.00 -78.09 409.84 3.92 -74.16 By element: Atomic # 1 Polarization: 34.86 SS G_CDS: 0.36 Total: 35.22 kcal Atomic # 6 Polarization: 16.62 SS G_CDS: 8.02 Total: 24.64 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -5.36 Total: -127.21 kcal Atomic # 8 Polarization: -52.51 SS G_CDS: -1.12 Total: -53.63 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.82 kcal Total: -78.09 3.92 -74.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276740391.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.528 kcal (2) G-P(sol) polarization free energy of solvation -78.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds