Wall clock time and date at job start Wed Apr 1 2020 00:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47137 * 2 1 4 4 C 1.42897 * 114.00104 * 175.30974 * 3 2 1 5 5 H 1.09000 * 109.46951 * 342.47041 * 4 3 2 6 6 C 1.52997 * 109.47467 * 102.47537 * 4 3 2 7 7 C 1.53004 * 109.46871 * 297.20407 * 6 4 3 8 8 C 1.50706 * 109.46955 * 222.47505 * 4 3 2 9 9 O 1.21280 * 120.00029 * 354.99574 * 8 4 3 10 10 N 1.34780 * 119.99780 * 174.99741 * 8 4 3 11 11 C 1.46504 * 119.99869 * 0.02562 * 10 8 4 12 12 C 1.46495 * 119.99856 * 179.97438 * 10 8 4 13 13 C 1.53780 * 113.61621 * 161.91605 * 12 10 8 14 14 C 1.54045 * 86.98662 * 270.83969 * 13 12 10 15 15 N 1.46902 * 113.69339 * 220.00992 * 14 13 12 16 16 C 1.46899 * 110.99630 * 252.53174 * 15 14 13 17 17 C 1.50707 * 109.47273 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99460 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00179 * 180.02562 * 17 16 15 20 20 C 1.37106 * 120.00071 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99674 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00133 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99883 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00261 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46997 * 89.99987 * 24 22 20 26 26 H 1.48495 * 109.47270 * 210.00236 * 24 22 20 27 27 H 1.48504 * 109.46938 * 330.00372 * 24 22 20 28 28 C 1.53775 * 87.07725 * 334.56647 * 14 13 12 29 29 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47140 * 300.00545 * 1 2 3 31 31 H 1.09004 * 109.47307 * 60.00250 * 1 2 3 32 32 H 1.08996 * 109.46900 * 239.99770 * 2 1 3 33 33 H 1.08999 * 109.47023 * 119.99353 * 2 1 3 34 34 H 1.09001 * 109.47086 * 177.20885 * 6 4 3 35 35 H 1.08994 * 109.47386 * 57.19806 * 6 4 3 36 36 H 1.09002 * 109.47331 * 298.26117 * 7 6 4 37 37 H 1.08998 * 109.47159 * 178.26694 * 7 6 4 38 38 H 1.08997 * 109.47177 * 58.26073 * 7 6 4 39 39 H 1.08995 * 109.47219 * 94.93973 * 11 10 8 40 40 H 1.09005 * 109.46371 * 214.93534 * 11 10 8 41 41 H 1.08994 * 109.47123 * 334.93394 * 11 10 8 42 42 H 1.09001 * 112.84820 * 293.11695 * 12 10 8 43 43 H 1.09003 * 113.61293 * 25.43695 * 13 12 10 44 44 H 1.09001 * 113.61679 * 156.33512 * 13 12 10 45 45 H 1.09002 * 113.61328 * 89.11418 * 14 13 12 46 46 H 1.00901 * 111.00157 * 128.58567 * 15 14 13 47 47 H 1.09000 * 109.47307 * 299.99972 * 16 15 14 48 48 H 1.09000 * 109.47372 * 60.00578 * 16 15 14 49 49 H 0.97000 * 120.00380 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99954 * 180.02562 * 23 22 20 51 51 H 1.09004 * 113.61667 * 270.87701 * 28 14 13 52 52 H 1.09001 * 113.61348 * 139.97574 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 0.1067 5 1 3.8401 0.5226 0.4750 6 6 4.0181 1.7745 -1.2692 7 6 3.7287 0.6147 -2.2243 8 6 3.7706 2.5722 1.0657 9 8 2.8907 3.2627 1.5346 10 7 5.0561 2.7980 1.4021 11 6 6.1190 1.9643 0.8352 12 6 5.3904 3.8780 2.3338 13 6 6.7905 3.7437 2.9556 14 6 6.1265 2.9147 4.0714 15 7 6.6543 3.1997 5.4123 16 6 7.4873 2.0910 5.8967 17 6 8.0093 2.4184 7.2721 18 8 7.7165 3.4720 7.7968 19 7 8.8022 1.5411 7.9185 20 6 9.2774 1.8392 9.1695 21 1 9.0167 2.7773 9.6367 22 6 10.0953 0.9349 9.8357 23 7 10.5504 1.2205 11.0350 24 14 10.5469 -0.6875 9.0273 25 1 11.7951 -0.5181 8.2410 26 1 10.7571 -1.7202 10.0734 27 1 9.4473 -1.1137 8.1248 28 6 4.8254 3.6680 3.7486 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.0958 1.9106 -1.1790 35 1 3.5678 2.6872 -1.6592 36 1 4.2050 -0.2916 -1.8503 37 1 4.1231 0.8509 -3.2126 38 1 2.6521 0.4586 -2.2905 39 1 6.5342 2.4541 -0.0455 40 1 6.9050 1.8236 1.5772 41 1 5.7085 0.9950 0.5523 42 1 5.1873 4.8677 1.9250 43 1 7.4879 3.1734 2.3420 44 1 7.2065 4.6894 3.3031 45 1 6.0789 1.8478 3.8531 46 1 5.9070 3.4002 6.0600 47 1 6.8897 1.1806 5.9426 48 1 8.3253 1.9416 5.2159 49 1 9.0366 0.6986 7.4987 50 1 11.1217 0.5893 11.5000 51 1 4.7050 4.5931 4.3124 52 1 3.9372 3.0366 3.7747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001279199977.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:54 Heat of formation + Delta-G solvation = -77.805408 kcal Electronic energy + Delta-G solvation = -30277.226805 eV Core-core repulsion = 26085.464739 eV Total energy + Delta-G solvation = -4191.762065 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.03087 -39.31692 -38.37590 -37.64103 -35.49145 -34.27751 -33.81783 -32.76057 -31.64850 -31.44984 -28.01312 -27.84975 -26.89884 -25.41362 -24.24683 -23.32792 -22.98591 -22.20053 -20.69712 -19.42568 -18.78352 -18.27112 -17.68511 -17.19871 -16.94254 -16.35244 -16.04867 -15.54283 -15.35996 -15.20885 -14.81687 -14.64570 -14.46549 -14.30701 -14.08202 -13.65286 -13.32848 -13.18540 -13.02592 -12.92459 -12.83983 -12.65065 -12.57857 -12.27156 -12.21295 -12.16009 -11.98308 -11.80199 -11.71423 -11.61588 -11.47783 -11.24839 -11.17752 -10.88331 -10.61114 -10.49559 -10.24537 -9.98465 -9.58746 -9.58324 -8.93202 -8.57843 -8.21107 -8.15892 -6.31864 -3.83328 2.30637 2.37615 3.00442 3.05016 3.13274 3.34610 3.73173 3.99472 4.08305 4.15053 4.28190 4.31225 4.38465 4.49808 4.59294 4.63515 4.64994 4.74546 4.77709 4.83914 4.92978 4.97707 4.99256 5.04004 5.13478 5.20876 5.21466 5.25949 5.36641 5.43494 5.50370 5.56900 5.59391 5.64718 5.72504 5.73860 5.75380 5.76051 5.86127 5.88340 5.95618 6.04357 6.37091 6.67208 7.03915 7.15614 7.56243 7.58106 7.90921 8.13899 8.58985 8.94257 9.41564 9.81965 10.81295 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.001984 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.564468 B =14109.541342 C =14558.180447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.051 3.949 3 O -0.354 6.354 4 C 0.076 3.924 5 H 0.086 0.914 6 C -0.143 4.143 7 C -0.154 4.154 8 C 0.509 3.491 9 O -0.511 6.511 10 N -0.599 5.599 11 C 0.065 3.935 12 C 0.123 3.877 13 C -0.130 4.130 14 C 0.060 3.940 15 N -0.655 5.655 16 C 0.048 3.952 17 C 0.450 3.550 18 O -0.564 6.564 19 N -0.591 5.591 20 C -0.305 4.305 21 H 0.120 0.880 22 C 0.040 3.960 23 N -0.881 5.881 24 Si 0.881 3.119 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.142 4.142 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.054 0.946 33 H 0.048 0.952 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.054 0.946 37 H 0.061 0.939 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.087 0.913 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.068 0.932 46 H 0.353 0.647 47 H 0.043 0.957 48 H 0.086 0.914 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.100 0.900 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.590 -6.065 -29.789 32.905 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.026 4.026 3 O -0.272 6.272 4 C 0.015 3.985 5 H 0.103 0.897 6 C -0.181 4.181 7 C -0.212 4.212 8 C 0.296 3.704 9 O -0.385 6.385 10 N -0.336 5.336 11 C -0.078 4.078 12 C 0.020 3.980 13 C -0.169 4.169 14 C -0.050 4.050 15 N -0.288 5.288 16 C -0.085 4.085 17 C 0.235 3.765 18 O -0.445 6.445 19 N -0.231 5.231 20 C -0.433 4.433 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.521 5.521 24 Si 0.707 3.293 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.181 4.181 29 H 0.090 0.910 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.072 0.928 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.096 0.904 36 H 0.073 0.927 37 H 0.080 0.920 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.100 0.900 41 H 0.091 0.909 42 H 0.105 0.895 43 H 0.093 0.907 44 H 0.125 0.875 45 H 0.086 0.914 46 H 0.174 0.826 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.203 0.797 50 H 0.084 0.916 51 H 0.119 0.881 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -12.751 -4.515 -29.201 32.182 hybrid contribution 0.139 -2.423 -0.246 2.439 sum -12.612 -6.937 -29.447 32.777 Atomic orbital electron populations 1.21736 0.93373 1.02279 1.03480 1.22747 0.96111 0.83515 1.00222 1.88041 1.18655 1.26416 1.94130 1.21963 0.83956 0.97540 0.95065 0.89653 1.22080 1.01644 1.00678 0.93727 1.21839 1.02397 0.97603 0.99312 1.20572 0.82111 0.85633 0.82094 1.90731 1.46677 1.47872 1.53219 1.47578 1.06069 1.34085 1.45839 1.22078 0.91754 0.94567 0.99412 1.21780 0.97360 0.89966 0.88933 1.23541 0.94457 1.02603 0.96275 1.23113 0.94571 0.97229 0.90108 1.60217 1.26034 1.39775 1.02769 1.21766 0.97993 0.92499 0.96275 1.19729 0.83687 0.85865 0.87198 1.90570 1.60801 1.24873 1.68302 1.42210 1.45654 1.17773 1.17427 1.19437 1.26851 1.06384 0.90673 0.86278 1.25047 0.97086 0.98300 0.95809 1.69625 1.33760 1.36599 1.12140 0.86660 0.79190 0.83837 0.79609 1.19602 1.20196 1.19592 1.23484 0.97111 1.02010 0.95493 0.90991 0.91578 0.91745 0.92754 0.93323 0.89777 0.90421 0.92661 0.91961 0.91876 0.91859 0.89953 0.90925 0.89475 0.90738 0.87469 0.91425 0.82594 0.93920 0.89587 0.79739 0.91619 0.88129 0.90900 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 10.28 37.16 0.38 -0.60 16 2 C 0.05 0.36 6.04 37.16 0.22 0.58 16 3 O -0.35 -3.64 9.19 -55.09 -0.51 -4.15 16 4 C 0.08 0.63 1.88 -27.88 -0.05 0.58 16 5 H 0.09 0.53 6.61 -51.93 -0.34 0.19 16 6 C -0.14 -0.88 5.34 -26.73 -0.14 -1.02 16 7 C -0.15 -0.72 9.11 37.16 0.34 -0.38 16 8 C 0.51 5.71 6.80 -10.98 -0.07 5.64 16 9 O -0.51 -8.00 15.55 -14.30 -0.22 -8.22 16 10 N -0.60 -5.40 3.02 -173.00 -0.52 -5.92 16 11 C 0.06 0.35 8.39 59.85 0.50 0.85 16 12 C 0.12 1.25 4.11 -67.12 -0.28 0.98 16 13 C -0.13 -1.28 7.03 -25.78 -0.18 -1.46 16 14 C 0.06 0.70 4.01 -66.76 -0.27 0.44 16 15 N -0.66 -10.05 6.19 -106.98 -0.66 -10.71 16 16 C 0.05 0.78 6.01 -4.97 -0.03 0.75 16 17 C 0.45 10.20 7.82 -10.99 -0.09 10.11 16 18 O -0.56 -15.21 15.78 5.55 0.09 -15.12 16 19 N -0.59 -14.06 5.09 -10.96 -0.06 -14.11 16 20 C -0.30 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.75 13.96 55.50 0.77 -24.98 16 24 Si 0.88 19.24 27.74 -169.99 -4.71 14.53 16 25 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 26 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 27 H -0.27 -5.36 6.52 56.52 0.37 -4.99 16 28 C -0.14 -1.67 6.97 -25.92 -0.18 -1.85 16 29 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.05 0.29 6.03 -51.93 -0.31 -0.03 16 33 H 0.05 0.32 8.02 -51.93 -0.42 -0.09 16 34 H 0.08 0.38 5.17 -51.93 -0.27 0.11 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.34 6.12 -51.93 -0.32 0.02 16 39 H 0.06 0.26 7.29 -51.93 -0.38 -0.12 16 40 H 0.08 0.44 5.72 -51.93 -0.30 0.14 16 41 H 0.07 0.28 5.75 -51.93 -0.30 -0.02 16 42 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 43 H 0.07 0.60 5.77 -51.93 -0.30 0.30 16 44 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.07 0.75 7.87 -51.93 -0.41 0.34 16 46 H 0.35 5.78 8.24 -39.29 -0.32 5.45 16 47 H 0.04 0.62 8.13 -51.93 -0.42 0.20 16 48 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 49 H 0.37 7.68 5.76 -40.82 -0.24 7.44 16 50 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 51 H 0.10 1.20 8.14 -51.93 -0.42 0.78 16 52 H 0.07 0.96 7.27 -51.93 -0.38 0.58 16 LS Contribution 407.59 15.07 6.14 6.14 Total: -1.00 -35.90 407.59 -8.25 -44.15 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -8.48 Total: 11.55 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -0.09 Total: 6.84 kcal Atomic # 7 Polarization: -55.26 SS G_CDS: -0.47 Total: -55.72 kcal Atomic # 8 Polarization: -26.85 SS G_CDS: -0.64 Total: -27.49 kcal Atomic # 14 Polarization: 19.24 SS G_CDS: -4.71 Total: 14.53 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.90 -8.25 -44.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279199977.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.654 kcal (2) G-P(sol) polarization free energy of solvation -35.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds