Wall clock time and date at job start Wed Apr 1 2020 00:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47137 * 2 1 4 4 C 1.42897 * 114.00104 * 175.30974 * 3 2 1 5 5 H 1.09000 * 109.46951 * 342.47041 * 4 3 2 6 6 C 1.52997 * 109.47467 * 102.47537 * 4 3 2 7 7 C 1.53004 * 109.46871 * 297.20407 * 6 4 3 8 8 C 1.50706 * 109.46955 * 222.47505 * 4 3 2 9 9 O 1.21280 * 120.00029 * 354.99574 * 8 4 3 10 10 N 1.34780 * 119.99780 * 174.99741 * 8 4 3 11 11 C 1.46504 * 119.99869 * 0.02562 * 10 8 4 12 12 C 1.46495 * 119.99856 * 179.97438 * 10 8 4 13 13 C 1.53780 * 113.61621 * 161.91605 * 12 10 8 14 14 C 1.54045 * 86.98662 * 270.83969 * 13 12 10 15 15 N 1.46902 * 113.69339 * 220.00992 * 14 13 12 16 16 C 1.46899 * 110.99630 * 252.53174 * 15 14 13 17 17 C 1.50707 * 109.47273 * 180.02562 * 16 15 14 18 18 O 1.21293 * 119.99460 * 359.97438 * 17 16 15 19 19 N 1.34768 * 120.00179 * 180.02562 * 17 16 15 20 20 C 1.37106 * 120.00071 * 179.97438 * 19 17 16 21 21 H 1.07999 * 119.99674 * 359.97438 * 20 19 17 22 22 C 1.38946 * 120.00133 * 180.02562 * 20 19 17 23 23 N 1.31415 * 119.99883 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00261 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.46997 * 89.99987 * 24 22 20 26 26 H 1.48495 * 109.47270 * 210.00236 * 24 22 20 27 27 H 1.48504 * 109.46938 * 330.00372 * 24 22 20 28 28 C 1.53775 * 87.07725 * 334.56647 * 14 13 12 29 29 H 1.08999 * 109.47337 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47140 * 300.00545 * 1 2 3 31 31 H 1.09004 * 109.47307 * 60.00250 * 1 2 3 32 32 H 1.08996 * 109.46900 * 239.99770 * 2 1 3 33 33 H 1.08999 * 109.47023 * 119.99353 * 2 1 3 34 34 H 1.09001 * 109.47086 * 177.20885 * 6 4 3 35 35 H 1.08994 * 109.47386 * 57.19806 * 6 4 3 36 36 H 1.09002 * 109.47331 * 298.26117 * 7 6 4 37 37 H 1.08998 * 109.47159 * 178.26694 * 7 6 4 38 38 H 1.08997 * 109.47177 * 58.26073 * 7 6 4 39 39 H 1.08995 * 109.47219 * 94.93973 * 11 10 8 40 40 H 1.09005 * 109.46371 * 214.93534 * 11 10 8 41 41 H 1.08994 * 109.47123 * 334.93394 * 11 10 8 42 42 H 1.09001 * 112.84820 * 293.11695 * 12 10 8 43 43 H 1.09003 * 113.61293 * 25.43695 * 13 12 10 44 44 H 1.09001 * 113.61679 * 156.33512 * 13 12 10 45 45 H 1.09002 * 113.61328 * 89.11418 * 14 13 12 46 46 H 1.00901 * 111.00157 * 128.58567 * 15 14 13 47 47 H 1.09000 * 109.47307 * 299.99972 * 16 15 14 48 48 H 1.09000 * 109.47372 * 60.00578 * 16 15 14 49 49 H 0.97000 * 120.00380 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99954 * 180.02562 * 23 22 20 51 51 H 1.09004 * 113.61667 * 270.87701 * 28 14 13 52 52 H 1.09001 * 113.61348 * 139.97574 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4267 1.4616 0.1067 5 1 3.8401 0.5226 0.4750 6 6 4.0181 1.7745 -1.2692 7 6 3.7287 0.6147 -2.2243 8 6 3.7706 2.5722 1.0657 9 8 2.8907 3.2627 1.5346 10 7 5.0561 2.7980 1.4021 11 6 6.1190 1.9643 0.8352 12 6 5.3904 3.8780 2.3338 13 6 6.7905 3.7437 2.9556 14 6 6.1265 2.9147 4.0714 15 7 6.6543 3.1997 5.4123 16 6 7.4873 2.0910 5.8967 17 6 8.0093 2.4184 7.2721 18 8 7.7165 3.4720 7.7968 19 7 8.8022 1.5411 7.9185 20 6 9.2774 1.8392 9.1695 21 1 9.0167 2.7773 9.6367 22 6 10.0953 0.9349 9.8357 23 7 10.5504 1.2205 11.0350 24 14 10.5469 -0.6875 9.0273 25 1 11.7951 -0.5181 8.2410 26 1 10.7571 -1.7202 10.0734 27 1 9.4473 -1.1137 8.1248 28 6 4.8254 3.6680 3.7486 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 5.0958 1.9106 -1.1790 35 1 3.5678 2.6872 -1.6592 36 1 4.2050 -0.2916 -1.8503 37 1 4.1231 0.8509 -3.2126 38 1 2.6521 0.4586 -2.2905 39 1 6.5342 2.4541 -0.0455 40 1 6.9050 1.8236 1.5772 41 1 5.7085 0.9950 0.5523 42 1 5.1873 4.8677 1.9250 43 1 7.4879 3.1734 2.3420 44 1 7.2065 4.6894 3.3031 45 1 6.0789 1.8478 3.8531 46 1 5.9070 3.4002 6.0600 47 1 6.8897 1.1806 5.9426 48 1 8.3253 1.9416 5.2159 49 1 9.0366 0.6986 7.4987 50 1 11.1217 0.5893 11.5000 51 1 4.7050 4.5931 4.3124 52 1 3.9372 3.0366 3.7747 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001279199977.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:53 Heat of formation + Delta-G solvation = -105.420264 kcal Electronic energy + Delta-G solvation = -30278.424275 eV Core-core repulsion = 26085.464739 eV Total energy + Delta-G solvation = -4192.959535 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.81576 -40.40263 -39.83716 -38.50611 -36.43300 -35.96395 -34.83842 -33.79941 -33.56109 -31.96022 -28.97703 -28.48024 -28.02155 -26.43107 -25.67599 -24.18681 -23.65900 -22.78522 -21.51194 -21.27556 -20.31059 -19.49708 -18.37594 -17.98776 -17.82522 -17.42369 -16.99281 -16.82703 -16.50334 -16.43886 -16.07345 -15.58725 -15.39317 -15.10606 -14.95888 -14.89741 -14.61237 -14.36014 -14.07753 -13.91132 -13.61973 -13.45511 -13.33820 -13.28154 -13.13172 -12.92763 -12.88490 -12.77753 -12.68716 -12.51957 -12.41240 -12.22701 -12.10376 -11.98664 -11.86361 -11.62642 -11.51093 -11.33343 -10.91987 -10.43947 -10.29731 -10.25097 -9.66441 -9.36128 -8.41114 -6.02540 1.30276 1.36613 1.45534 1.52175 1.69986 1.95406 2.23730 2.73580 2.79175 3.14877 3.30557 3.40181 3.55079 3.65130 3.77534 3.80572 3.89124 4.08302 4.14413 4.15525 4.20861 4.28704 4.34772 4.42420 4.46584 4.50434 4.54219 4.55508 4.59283 4.76491 4.77779 4.82199 4.87515 4.89690 4.97768 4.99699 5.07284 5.09725 5.16154 5.21154 5.25798 5.40030 5.52017 5.59737 5.91935 6.08256 6.11596 6.31629 6.37401 6.59699 6.87955 7.13629 7.39441 7.96477 8.76598 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.016037 B = 0.001984 C = 0.001923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1745.564468 B =14109.541342 C =14558.180447 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.045 3.955 3 O -0.388 6.388 4 C 0.078 3.922 5 H 0.112 0.888 6 C -0.138 4.138 7 C -0.151 4.151 8 C 0.500 3.500 9 O -0.570 6.570 10 N -0.593 5.593 11 C 0.053 3.947 12 C 0.127 3.873 13 C -0.115 4.115 14 C 0.065 3.935 15 N -0.673 5.673 16 C 0.063 3.937 17 C 0.447 3.553 18 O -0.616 6.616 19 N -0.590 5.590 20 C -0.330 4.330 21 H 0.053 0.947 22 C -0.018 4.018 23 N -0.935 5.935 24 Si 0.968 3.032 25 H -0.255 1.255 26 H -0.276 1.276 27 H -0.230 1.230 28 C -0.146 4.146 29 H 0.094 0.906 30 H 0.046 0.954 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.053 0.947 34 H 0.105 0.895 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.070 0.930 38 H 0.052 0.948 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.104 0.896 44 H 0.096 0.904 45 H 0.087 0.913 46 H 0.343 0.657 47 H 0.074 0.926 48 H 0.120 0.880 49 H 0.390 0.610 50 H 0.279 0.721 51 H 0.088 0.912 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.177 -10.012 -33.646 36.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.031 4.031 3 O -0.307 6.307 4 C 0.017 3.983 5 H 0.130 0.870 6 C -0.175 4.175 7 C -0.209 4.209 8 C 0.289 3.711 9 O -0.449 6.449 10 N -0.327 5.327 11 C -0.088 4.088 12 C 0.022 3.978 13 C -0.154 4.154 14 C -0.044 4.044 15 N -0.305 5.305 16 C -0.070 4.070 17 C 0.235 3.765 18 O -0.501 6.501 19 N -0.232 5.232 20 C -0.459 4.459 21 H 0.071 0.929 22 C -0.216 4.216 23 N -0.576 5.576 24 Si 0.788 3.212 25 H -0.179 1.179 26 H -0.201 1.201 27 H -0.153 1.153 28 C -0.185 4.185 29 H 0.112 0.888 30 H 0.065 0.935 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.123 0.877 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.110 0.890 41 H 0.113 0.887 42 H 0.096 0.904 43 H 0.122 0.878 44 H 0.115 0.885 45 H 0.105 0.895 46 H 0.162 0.838 47 H 0.092 0.908 48 H 0.137 0.863 49 H 0.226 0.774 50 H 0.089 0.911 51 H 0.106 0.894 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -11.313 -8.484 -33.112 36.005 hybrid contribution -0.366 -1.049 1.005 1.498 sum -11.679 -9.533 -32.107 35.471 Atomic orbital electron populations 1.21776 0.93477 1.03371 1.02330 1.22938 0.96190 0.82487 1.01469 1.88015 1.19989 1.28371 1.94280 1.22112 0.83470 0.97291 0.95435 0.87007 1.22072 1.02461 1.00411 0.92594 1.21828 1.02016 0.97630 0.99382 1.21281 0.82133 0.85785 0.81923 1.90701 1.48504 1.50147 1.55518 1.47648 1.06433 1.33723 1.44927 1.22435 0.90923 0.95167 1.00292 1.21656 0.97438 0.90358 0.88322 1.23435 0.94421 1.02135 0.95377 1.23215 0.94293 0.98423 0.88499 1.60271 1.26161 1.40035 1.04001 1.21713 0.99457 0.93695 0.92104 1.21043 0.81855 0.84520 0.89111 1.90552 1.62139 1.27190 1.70184 1.42017 1.46106 1.19000 1.16028 1.19003 1.28900 1.04936 0.93086 0.92896 1.26179 0.95924 1.03347 0.96181 1.69816 1.34557 1.38807 1.14378 0.85322 0.80412 0.76445 0.79050 1.17910 1.20143 1.15317 1.23438 0.96753 1.01301 0.96975 0.88760 0.93525 0.92091 0.90497 0.92849 0.87693 0.92604 0.90814 0.91126 0.92879 0.89900 0.88979 0.88741 0.90366 0.87779 0.88525 0.89527 0.83824 0.90829 0.86253 0.77385 0.91143 0.89375 0.92762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 10.28 71.98 0.74 -1.13 16 2 C 0.04 0.57 6.04 71.98 0.44 1.00 16 3 O -0.39 -7.73 9.19 -129.99 -1.19 -8.93 16 4 C 0.08 1.14 1.88 29.85 0.06 1.20 16 5 H 0.11 0.98 6.61 -2.39 -0.02 0.97 16 6 C -0.14 -1.34 5.34 30.59 0.16 -1.17 16 7 C -0.15 -0.93 9.11 71.98 0.66 -0.27 16 8 C 0.50 10.81 6.80 87.66 0.60 11.40 16 9 O -0.57 -18.54 15.55 15.96 0.25 -18.29 16 10 N -0.59 -9.34 3.02 -819.65 -2.47 -11.82 16 11 C 0.05 0.33 8.39 127.77 1.07 1.40 16 12 C 0.13 2.42 4.11 45.52 0.19 2.61 16 13 C -0.12 -1.94 7.03 31.21 0.22 -1.72 16 14 C 0.07 1.36 4.01 45.53 0.18 1.55 16 15 N -0.67 -19.59 6.19 -492.38 -3.05 -22.64 16 16 C 0.06 1.84 6.01 85.56 0.51 2.36 16 17 C 0.45 20.04 7.82 87.66 0.69 20.73 16 18 O -0.62 -34.49 15.78 -3.07 -0.05 -34.53 16 19 N -0.59 -27.52 5.09 -306.98 -1.56 -29.08 16 20 C -0.33 -19.35 10.16 84.04 0.85 -18.50 16 21 H 0.05 3.72 7.39 -2.91 -0.02 3.70 16 22 C -0.02 -0.99 5.50 84.92 0.47 -0.52 16 23 N -0.94 -56.39 13.96 21.66 0.30 -56.09 16 24 Si 0.97 38.05 27.74 68.60 1.90 39.95 16 25 H -0.25 -9.41 7.11 99.48 0.71 -8.70 16 26 H -0.28 -10.83 7.11 99.48 0.71 -10.13 16 27 H -0.23 -7.48 6.52 99.48 0.65 -6.83 16 28 C -0.15 -3.42 6.97 31.12 0.22 -3.20 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.08 0.60 6.03 -2.39 -0.01 0.59 16 33 H 0.05 0.60 8.02 -2.39 -0.02 0.58 16 34 H 0.10 0.54 5.17 -2.39 -0.01 0.53 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.78 16 36 H 0.07 0.20 8.14 -2.39 -0.02 0.18 16 37 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.05 0.45 6.12 -2.39 -0.01 0.43 16 39 H 0.08 0.26 7.29 -2.39 -0.02 0.24 16 40 H 0.09 0.45 5.72 -2.38 -0.01 0.43 16 41 H 0.09 0.21 5.75 -2.39 -0.01 0.20 16 42 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.10 1.16 5.77 -2.39 -0.01 1.15 16 44 H 0.10 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.09 1.53 7.87 -2.39 -0.02 1.52 16 46 H 0.34 11.24 8.24 -89.69 -0.74 10.50 16 47 H 0.07 1.78 8.13 -2.39 -0.02 1.76 16 48 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 49 H 0.39 14.81 5.76 -92.71 -0.53 14.28 16 50 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 51 H 0.09 2.24 8.14 -2.38 -0.02 2.22 16 52 H 0.05 1.47 7.27 -2.39 -0.02 1.46 16 Total: -1.00 -87.32 407.59 0.79 -86.53 By element: Atomic # 1 Polarization: 39.56 SS G_CDS: -0.39 Total: 39.17 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: 7.05 Total: 15.72 kcal Atomic # 7 Polarization: -112.85 SS G_CDS: -6.78 Total: -119.63 kcal Atomic # 8 Polarization: -60.76 SS G_CDS: -0.99 Total: -61.75 kcal Atomic # 14 Polarization: 38.05 SS G_CDS: 1.90 Total: 39.95 kcal Total: -87.32 0.79 -86.53 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001279199977.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.886 kcal (2) G-P(sol) polarization free energy of solvation -87.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.420 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds