Wall clock time and date at job start Wed Apr 1 2020 00:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46824 * 2 1 4 4 C 1.50698 * 109.47176 * 119.99784 * 2 1 3 5 5 O 1.21280 * 120.00176 * 263.15767 * 4 2 1 6 6 N 1.34778 * 119.99634 * 83.16648 * 4 2 1 7 7 C 1.46497 * 119.99947 * 185.28895 * 6 4 2 8 8 C 1.53005 * 109.47268 * 185.03023 * 7 6 4 9 9 H 1.09001 * 109.70714 * 305.50559 * 8 7 6 10 10 C 1.53296 * 109.67975 * 66.03849 * 8 7 6 11 11 O 1.42960 * 109.22411 * 172.02870 * 10 8 7 12 12 C 1.42970 * 114.16176 * 297.41604 * 11 10 8 13 13 C 1.52879 * 109.29430 * 62.45318 * 12 11 10 14 14 N 1.47148 * 109.68171 * 184.96274 * 8 7 6 15 15 C 1.36933 * 120.98509 * 9.72209 * 14 8 7 16 16 H 1.08005 * 119.99986 * 329.54887 * 15 14 8 17 17 C 1.38812 * 120.00142 * 149.54800 * 15 14 8 18 18 N 1.31618 * 119.99878 * 350.14464 * 17 15 14 19 19 Si 1.86799 * 119.99799 * 170.14346 * 17 15 14 20 20 H 1.48504 * 109.47362 * 274.99976 * 19 17 15 21 21 H 1.48506 * 109.47375 * 35.00247 * 19 17 15 22 22 H 1.48498 * 109.47218 * 155.00167 * 19 17 15 23 23 N 1.46896 * 109.47200 * 240.00323 * 2 1 3 24 24 C 1.47018 * 111.00165 * 183.63159 * 23 2 1 25 25 C 1.53101 * 109.25561 * 177.60621 * 24 23 2 26 26 O 1.43017 * 109.25729 * 56.85248 * 25 24 23 27 27 C 1.43014 * 113.73526 * 301.32283 * 26 25 24 28 28 C 1.47020 * 111.00128 * 59.99539 * 23 2 1 29 29 H 1.09005 * 109.46941 * 303.25372 * 1 2 3 30 30 H 1.08999 * 109.47335 * 63.25429 * 1 2 3 31 31 H 1.09000 * 109.46864 * 183.25997 * 1 2 3 32 32 H 1.08999 * 109.46885 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47159 * 300.00249 * 3 2 1 34 34 H 1.09004 * 109.46817 * 60.00539 * 3 2 1 35 35 H 0.97000 * 120.00179 * 5.28419 * 6 4 2 36 36 H 1.08998 * 109.47319 * 65.03048 * 7 6 4 37 37 H 1.08996 * 109.46865 * 305.03059 * 7 6 4 38 38 H 1.09004 * 109.51011 * 291.95117 * 10 8 7 39 39 H 1.09004 * 109.51554 * 52.10059 * 10 8 7 40 40 H 1.08998 * 109.50775 * 182.50422 * 12 11 10 41 41 H 1.08997 * 109.51117 * 302.65599 * 12 11 10 42 42 H 1.09001 * 109.61235 * 188.11722 * 13 12 11 43 43 H 1.08999 * 109.53051 * 67.69811 * 13 12 11 44 44 H 0.97005 * 119.99274 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.50350 * 297.54253 * 24 23 2 46 46 H 1.08997 * 109.50518 * 57.67277 * 24 23 2 47 47 H 1.09000 * 109.50876 * 296.91215 * 25 24 23 48 48 H 1.09004 * 109.49993 * 176.78041 * 25 24 23 49 49 H 1.08990 * 109.51055 * 298.73528 * 27 26 25 50 50 H 1.09007 * 109.53759 * 178.62796 * 27 26 25 51 51 H 1.08993 * 109.50773 * 302.33072 * 28 23 2 52 52 H 1.09003 * 109.50148 * 62.45822 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3524 -0.0722 2.2109 6 7 2.1260 -2.0548 1.2413 7 6 2.5030 -2.7529 2.4728 8 6 2.6580 -4.2476 2.1849 9 1 1.7468 -4.6297 1.7246 10 6 3.8457 -4.4712 1.2418 11 8 4.0978 -5.8737 1.1267 12 6 4.4708 -6.5040 2.3546 13 6 3.3205 -6.3829 3.3543 14 7 2.9197 -4.9696 3.4401 15 6 2.7993 -4.3433 4.6518 16 1 2.9978 -3.2849 4.7348 17 6 2.4222 -5.0688 5.7736 18 7 1.9938 -6.3065 5.6435 19 14 2.5227 -4.2883 7.4678 20 1 3.8985 -4.4453 8.0043 21 1 2.1922 -2.8440 7.3679 22 1 1.5574 -4.9552 8.3781 23 7 2.0197 -0.6924 -1.1994 24 6 3.4867 -0.7878 -1.1908 25 6 3.9494 -1.5665 -2.4251 26 8 3.4557 -0.9214 -3.6022 27 6 2.0304 -0.8121 -3.6439 28 6 1.5482 -0.0258 -2.4220 29 1 -0.3633 0.5635 0.8594 30 1 -0.3634 0.4625 -0.9177 31 1 -0.3633 -1.0260 0.0584 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.9437 -2.5603 0.4337 36 1 1.7282 -2.6064 3.2253 37 1 3.4479 -2.3541 2.8418 38 1 3.6124 -4.0614 0.2591 39 1 4.7286 -3.9744 1.6441 40 1 4.6872 -7.5566 2.1724 41 1 5.3559 -6.0145 2.7608 42 1 3.6486 -6.7314 4.3336 43 1 2.4771 -6.9837 3.0139 44 1 1.7299 -6.8132 6.4275 45 1 3.9166 0.2137 -1.2099 46 1 3.8123 -1.3072 -0.2895 47 1 3.5632 -2.5848 -2.3789 48 1 5.0388 -1.5905 -2.4529 49 1 1.5884 -1.8083 -3.6332 50 1 1.7312 -0.2909 -4.5534 51 1 0.4589 0.0111 -2.4196 52 1 1.9472 0.9879 -2.4608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280417488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:16 Heat of formation + Delta-G solvation = -83.206595 kcal Electronic energy + Delta-G solvation = -32730.860038 eV Core-core repulsion = 28538.863760 eV Total energy + Delta-G solvation = -4191.996278 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -40.88154 -39.12607 -38.42315 -36.60069 -35.24553 -34.14321 -32.19241 -31.64568 -31.29531 -30.34672 -27.61510 -27.15985 -26.79176 -26.03913 -24.28597 -23.43561 -22.86389 -21.43404 -20.73788 -19.80424 -19.13436 -17.77174 -16.80391 -16.47139 -16.03756 -15.89047 -15.59686 -15.31911 -15.24704 -15.12352 -14.74901 -14.59420 -14.51594 -14.24983 -14.04902 -13.69436 -13.62708 -13.06369 -12.98036 -12.81243 -12.68807 -12.35597 -12.17361 -12.08179 -11.95696 -11.67833 -11.53811 -11.34527 -11.27332 -11.10825 -10.93111 -10.77937 -10.73619 -10.39432 -10.21104 -10.03607 -9.96994 -9.65325 -9.55376 -9.01253 -8.71200 -8.65348 -8.56176 -6.73167 -5.86717 -3.37035 2.71418 3.33442 3.34616 3.38773 3.41255 3.44154 3.63212 4.36976 4.47419 4.50987 4.59048 4.65132 4.79370 4.85775 4.91236 4.97176 5.04173 5.21889 5.27721 5.30995 5.35641 5.37928 5.43039 5.47743 5.52709 5.57671 5.59586 5.62791 5.68076 5.71847 5.79540 5.92408 5.95608 6.02558 6.13313 6.18813 6.32388 6.46210 6.52596 6.58111 6.61228 6.70151 6.84741 6.88122 7.09840 7.51023 7.70445 7.77435 7.86972 8.32192 8.44106 9.08637 9.69390 10.26887 11.20701 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.003528 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.697787 B = 7933.809580 C = 9375.702024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.090 3.910 3 C -0.166 4.166 4 C 0.524 3.476 5 O -0.540 6.540 6 N -0.716 5.716 7 C 0.126 3.874 8 C 0.133 3.867 9 H 0.039 0.961 10 C 0.054 3.946 11 O -0.394 6.394 12 C 0.035 3.965 13 C 0.145 3.855 14 N -0.587 5.587 15 C -0.261 4.261 16 H 0.072 0.928 17 C 0.010 3.990 18 N -0.902 5.902 19 Si 0.904 3.096 20 H -0.285 1.285 21 H -0.277 1.277 22 H -0.290 1.290 23 N -0.523 5.523 24 C 0.005 3.995 25 C 0.066 3.934 26 O -0.386 6.386 27 C 0.064 3.936 28 C 0.012 3.988 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.075 0.925 35 H 0.404 0.596 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.077 0.923 39 H 0.044 0.956 40 H 0.081 0.919 41 H 0.040 0.960 42 H 0.095 0.905 43 H 0.028 0.972 44 H 0.256 0.744 45 H 0.050 0.950 46 H 0.092 0.908 47 H 0.064 0.936 48 H 0.099 0.901 49 H 0.061 0.939 50 H 0.096 0.904 51 H 0.092 0.908 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.370 10.214 -17.625 20.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.002 4.002 3 C -0.225 4.225 4 C 0.308 3.692 5 O -0.416 6.416 6 N -0.368 5.368 7 C 0.003 3.997 8 C 0.025 3.975 9 H 0.056 0.944 10 C -0.025 4.025 11 O -0.313 6.313 12 C -0.043 4.043 13 C 0.019 3.981 14 N -0.312 5.312 15 C -0.390 4.390 16 H 0.089 0.911 17 C -0.190 4.190 18 N -0.546 5.546 19 Si 0.734 3.266 20 H -0.212 1.212 21 H -0.202 1.202 22 H -0.216 1.216 23 N -0.250 5.250 24 C -0.123 4.123 25 C -0.011 4.011 26 O -0.304 6.304 27 C -0.013 4.013 28 C -0.115 4.115 29 H 0.088 0.912 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.094 0.906 35 H 0.240 0.760 36 H 0.100 0.900 37 H 0.088 0.912 38 H 0.095 0.905 39 H 0.062 0.938 40 H 0.099 0.901 41 H 0.058 0.942 42 H 0.114 0.886 43 H 0.047 0.953 44 H 0.066 0.934 45 H 0.068 0.932 46 H 0.110 0.890 47 H 0.082 0.918 48 H 0.117 0.883 49 H 0.080 0.920 50 H 0.115 0.885 51 H 0.110 0.890 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -0.307 10.015 -17.036 19.764 hybrid contribution 0.033 0.890 1.141 1.447 sum -0.273 10.906 -15.895 19.278 Atomic orbital electron populations 1.21855 0.91282 1.03608 1.02777 1.21338 0.97284 0.93042 0.88580 1.22249 1.01947 0.95348 1.02990 1.20104 0.77835 0.82645 0.88588 1.90725 1.48804 1.66227 1.35864 1.46145 1.69319 1.06524 1.14764 1.21540 1.01647 0.91204 0.85290 1.21213 0.95642 0.90814 0.89813 0.94367 1.23012 0.97903 0.82634 0.98912 1.87786 1.89521 1.21476 1.32483 1.23290 0.98597 0.96355 0.86009 1.21358 0.93150 0.85180 0.98387 1.43946 1.79139 1.08176 0.99961 1.19164 1.40742 0.94321 0.84757 0.91077 1.25168 0.98093 0.96803 0.98897 1.69975 1.46025 1.09779 1.28819 0.86276 0.77500 0.78938 0.83906 1.21230 1.20223 1.21572 1.62461 1.10057 1.51116 1.01349 1.22991 0.87785 1.00968 1.00585 1.22674 0.99457 0.95768 0.83235 1.87986 1.21075 1.80123 1.41261 1.22665 0.81380 1.00174 0.97112 1.22909 1.01616 0.97009 0.90007 0.91206 0.91311 0.90997 0.92057 0.91809 0.90572 0.76046 0.90046 0.91194 0.90513 0.93793 0.90132 0.94154 0.88645 0.95342 0.93438 0.93181 0.88995 0.91798 0.88294 0.92035 0.88545 0.88995 0.93228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.31 8.32 37.16 0.31 -1.01 16 2 C 0.09 1.00 0.64 -132.75 -0.08 0.91 16 3 C -0.17 -1.77 7.28 37.16 0.27 -1.50 16 4 C 0.52 7.89 5.35 -10.99 -0.06 7.83 16 5 O -0.54 -10.33 16.05 5.56 0.09 -10.24 16 6 N -0.72 -10.60 4.36 -60.30 -0.26 -10.86 16 7 C 0.13 2.36 3.89 -4.04 -0.02 2.35 16 8 C 0.13 2.64 3.17 -67.42 -0.21 2.43 16 9 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 10 C 0.05 0.95 6.08 37.31 0.23 1.17 16 11 O -0.39 -7.63 10.74 -35.23 -0.38 -8.01 16 12 C 0.04 0.69 6.97 37.10 0.26 0.95 16 13 C 0.14 3.38 5.35 -3.75 -0.02 3.36 16 14 N -0.59 -14.16 3.04 -164.55 -0.50 -14.66 16 15 C -0.26 -6.87 8.58 -15.06 -0.13 -7.00 16 16 H 0.07 1.86 6.34 -52.48 -0.33 1.53 16 17 C 0.01 0.26 5.08 -17.43 -0.09 0.18 16 18 N -0.90 -25.40 11.05 55.49 0.61 -24.78 16 19 Si 0.90 21.51 29.56 -169.99 -5.03 16.48 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 23 N -0.52 -5.03 3.82 -219.99 -0.84 -5.87 16 24 C 0.00 0.05 4.85 -3.71 -0.02 0.03 16 25 C 0.07 0.61 7.01 37.21 0.26 0.87 16 26 O -0.39 -3.92 10.83 -35.23 -0.38 -4.30 16 27 C 0.06 0.49 7.01 37.21 0.26 0.75 16 28 C 0.01 0.10 4.87 -3.71 -0.02 0.08 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.50 6.18 -51.93 -0.32 0.18 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.06 0.70 6.54 -51.93 -0.34 0.36 16 33 H 0.06 0.55 6.46 -51.93 -0.34 0.21 16 34 H 0.08 0.89 7.88 -51.93 -0.41 0.48 16 35 H 0.40 5.26 7.24 -40.82 -0.30 4.96 16 36 H 0.08 1.76 7.24 -51.93 -0.38 1.38 16 37 H 0.07 1.41 7.81 -51.93 -0.41 1.01 16 38 H 0.08 1.11 7.61 -51.93 -0.40 0.71 16 39 H 0.04 0.79 8.13 -51.93 -0.42 0.36 16 40 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 41 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.10 2.45 6.26 -51.93 -0.33 2.12 16 43 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 45 H 0.05 0.53 6.52 -51.93 -0.34 0.19 16 46 H 0.09 1.05 6.29 -51.93 -0.33 0.73 16 47 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 48 H 0.10 0.81 8.14 -51.93 -0.42 0.39 16 49 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 50 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 51 H 0.09 0.59 6.12 -51.93 -0.32 0.27 16 52 H 0.05 0.40 6.44 -51.93 -0.33 0.07 16 LS Contribution 388.02 15.07 5.85 5.85 Total: -1.00 -30.98 388.02 -8.54 -39.52 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -8.64 Total: 5.47 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 0.94 Total: 11.41 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.99 Total: -56.17 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.67 Total: -22.55 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.03 Total: 16.48 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -30.98 -8.54 -39.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280417488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.689 kcal (2) G-P(sol) polarization free energy of solvation -30.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.518 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds