Wall clock time and date at job start Wed Apr 1 2020 00:23:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.46824 * 2 1 4 4 C 1.50698 * 109.47176 * 119.99784 * 2 1 3 5 5 O 1.21280 * 120.00176 * 263.15767 * 4 2 1 6 6 N 1.34778 * 119.99634 * 83.16648 * 4 2 1 7 7 C 1.46497 * 119.99947 * 185.28895 * 6 4 2 8 8 C 1.53005 * 109.47268 * 185.03023 * 7 6 4 9 9 H 1.09001 * 109.70714 * 305.50559 * 8 7 6 10 10 C 1.53296 * 109.67975 * 66.03849 * 8 7 6 11 11 O 1.42960 * 109.22411 * 172.02870 * 10 8 7 12 12 C 1.42970 * 114.16176 * 297.41604 * 11 10 8 13 13 C 1.52879 * 109.29430 * 62.45318 * 12 11 10 14 14 N 1.47148 * 109.68171 * 184.96274 * 8 7 6 15 15 C 1.36933 * 120.98509 * 9.72209 * 14 8 7 16 16 H 1.08005 * 119.99986 * 329.54887 * 15 14 8 17 17 C 1.38812 * 120.00142 * 149.54800 * 15 14 8 18 18 N 1.31618 * 119.99878 * 350.14464 * 17 15 14 19 19 Si 1.86799 * 119.99799 * 170.14346 * 17 15 14 20 20 H 1.48504 * 109.47362 * 274.99976 * 19 17 15 21 21 H 1.48506 * 109.47375 * 35.00247 * 19 17 15 22 22 H 1.48498 * 109.47218 * 155.00167 * 19 17 15 23 23 N 1.46896 * 109.47200 * 240.00323 * 2 1 3 24 24 C 1.47018 * 111.00165 * 183.63159 * 23 2 1 25 25 C 1.53101 * 109.25561 * 177.60621 * 24 23 2 26 26 O 1.43017 * 109.25729 * 56.85248 * 25 24 23 27 27 C 1.43014 * 113.73526 * 301.32283 * 26 25 24 28 28 C 1.47020 * 111.00128 * 59.99539 * 23 2 1 29 29 H 1.09005 * 109.46941 * 303.25372 * 1 2 3 30 30 H 1.08999 * 109.47335 * 63.25429 * 1 2 3 31 31 H 1.09000 * 109.46864 * 183.25997 * 1 2 3 32 32 H 1.08999 * 109.46885 * 179.97438 * 3 2 1 33 33 H 1.08993 * 109.47159 * 300.00249 * 3 2 1 34 34 H 1.09004 * 109.46817 * 60.00539 * 3 2 1 35 35 H 0.97000 * 120.00179 * 5.28419 * 6 4 2 36 36 H 1.08998 * 109.47319 * 65.03048 * 7 6 4 37 37 H 1.08996 * 109.46865 * 305.03059 * 7 6 4 38 38 H 1.09004 * 109.51011 * 291.95117 * 10 8 7 39 39 H 1.09004 * 109.51554 * 52.10059 * 10 8 7 40 40 H 1.08998 * 109.50775 * 182.50422 * 12 11 10 41 41 H 1.08997 * 109.51117 * 302.65599 * 12 11 10 42 42 H 1.09001 * 109.61235 * 188.11722 * 13 12 11 43 43 H 1.08999 * 109.53051 * 67.69811 * 13 12 11 44 44 H 0.97005 * 119.99274 * 180.02562 * 18 17 15 45 45 H 1.08997 * 109.50350 * 297.54253 * 24 23 2 46 46 H 1.08997 * 109.50518 * 57.67277 * 24 23 2 47 47 H 1.09000 * 109.50876 * 296.91215 * 25 24 23 48 48 H 1.09004 * 109.49993 * 176.78041 * 25 24 23 49 49 H 1.08990 * 109.51055 * 298.73528 * 27 26 25 50 50 H 1.09007 * 109.53759 * 178.62796 * 27 26 25 51 51 H 1.08993 * 109.50773 * 302.33072 * 28 23 2 52 52 H 1.09003 * 109.50148 * 62.45822 * 28 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.3524 -0.0722 2.2109 6 7 2.1260 -2.0548 1.2413 7 6 2.5030 -2.7529 2.4728 8 6 2.6580 -4.2476 2.1849 9 1 1.7468 -4.6297 1.7246 10 6 3.8457 -4.4712 1.2418 11 8 4.0978 -5.8737 1.1267 12 6 4.4708 -6.5040 2.3546 13 6 3.3205 -6.3829 3.3543 14 7 2.9197 -4.9696 3.4401 15 6 2.7993 -4.3433 4.6518 16 1 2.9978 -3.2849 4.7348 17 6 2.4222 -5.0688 5.7736 18 7 1.9938 -6.3065 5.6435 19 14 2.5227 -4.2883 7.4678 20 1 3.8985 -4.4453 8.0043 21 1 2.1922 -2.8440 7.3679 22 1 1.5574 -4.9552 8.3781 23 7 2.0197 -0.6924 -1.1994 24 6 3.4867 -0.7878 -1.1908 25 6 3.9494 -1.5665 -2.4251 26 8 3.4557 -0.9214 -3.6022 27 6 2.0304 -0.8121 -3.6439 28 6 1.5482 -0.0258 -2.4220 29 1 -0.3633 0.5635 0.8594 30 1 -0.3634 0.4625 -0.9177 31 1 -0.3633 -1.0260 0.0584 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8899 34 1 1.6766 1.9563 0.8901 35 1 1.9437 -2.5603 0.4337 36 1 1.7282 -2.6064 3.2253 37 1 3.4479 -2.3541 2.8418 38 1 3.6124 -4.0614 0.2591 39 1 4.7286 -3.9744 1.6441 40 1 4.6872 -7.5566 2.1724 41 1 5.3559 -6.0145 2.7608 42 1 3.6486 -6.7314 4.3336 43 1 2.4771 -6.9837 3.0139 44 1 1.7299 -6.8132 6.4275 45 1 3.9166 0.2137 -1.2099 46 1 3.8123 -1.3072 -0.2895 47 1 3.5632 -2.5848 -2.3789 48 1 5.0388 -1.5905 -2.4529 49 1 1.5884 -1.8083 -3.6332 50 1 1.7312 -0.2909 -4.5534 51 1 0.4589 0.0111 -2.4196 52 1 1.9472 0.9879 -2.4608 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280417488.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:23:15 Heat of formation + Delta-G solvation = -106.732481 kcal Electronic energy + Delta-G solvation = -32731.880197 eV Core-core repulsion = 28538.863760 eV Total energy + Delta-G solvation = -4193.016437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.88235 -40.34052 -39.80201 -37.51907 -36.81568 -35.85279 -33.30729 -33.00865 -32.24075 -31.93026 -28.93922 -28.40249 -27.80810 -27.31632 -25.28801 -25.14605 -23.97284 -22.88024 -21.76436 -21.38305 -20.27600 -18.90367 -18.42696 -17.48118 -17.37321 -17.08496 -16.84797 -16.70946 -16.28606 -16.19828 -15.94606 -15.76808 -15.67845 -15.48786 -15.32632 -15.20554 -14.97054 -14.70447 -14.47880 -13.93178 -13.59751 -13.52012 -13.17707 -13.09733 -13.02183 -12.91649 -12.81367 -12.77579 -12.60915 -12.45782 -12.31308 -12.13434 -12.05291 -12.01769 -11.90378 -11.40986 -11.32390 -10.86472 -10.71006 -10.61162 -10.59331 -10.07964 -9.48543 -8.70211 -7.92120 -5.44549 1.43200 1.44554 1.51141 1.52590 2.06996 2.45724 2.57112 2.97265 3.00002 3.24124 3.41647 3.60349 3.82743 3.89694 3.93855 3.96641 4.03708 4.09459 4.15505 4.22415 4.30923 4.37207 4.40709 4.52909 4.54428 4.59661 4.63361 4.64565 4.65010 4.70209 4.76188 4.84403 4.88648 4.91688 4.94667 4.99409 5.04448 5.05319 5.15183 5.22316 5.23383 5.41772 5.58348 5.61917 5.72508 5.86238 6.23336 6.25442 6.33259 6.54838 7.06464 7.20512 7.71873 8.25756 9.12929 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.013853 B = 0.003528 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2020.697787 B = 7933.809580 C = 9375.702024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.100 3.900 3 C -0.162 4.162 4 C 0.522 3.478 5 O -0.584 6.584 6 N -0.702 5.702 7 C 0.148 3.852 8 C 0.133 3.867 9 H 0.034 0.966 10 C 0.062 3.938 11 O -0.395 6.395 12 C 0.048 3.952 13 C 0.149 3.851 14 N -0.605 5.605 15 C -0.262 4.262 16 H 0.067 0.933 17 C -0.039 4.039 18 N -0.930 5.930 19 Si 0.961 3.039 20 H -0.281 1.281 21 H -0.277 1.277 22 H -0.291 1.291 23 N -0.522 5.522 24 C 0.007 3.993 25 C 0.069 3.931 26 O -0.402 6.402 27 C 0.061 3.939 28 C 0.012 3.988 29 H 0.061 0.939 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.049 0.951 33 H 0.091 0.909 34 H 0.061 0.939 35 H 0.416 0.584 36 H 0.047 0.953 37 H 0.053 0.947 38 H 0.115 0.885 39 H 0.043 0.957 40 H 0.109 0.891 41 H 0.044 0.956 42 H 0.068 0.932 43 H 0.005 0.995 44 H 0.252 0.748 45 H 0.044 0.956 46 H 0.076 0.924 47 H 0.066 0.934 48 H 0.107 0.893 49 H 0.064 0.936 50 H 0.117 0.883 51 H 0.112 0.888 52 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.459 11.142 -20.216 23.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.007 3.993 3 C -0.221 4.221 4 C 0.309 3.691 5 O -0.463 6.463 6 N -0.355 5.355 7 C 0.023 3.977 8 C 0.026 3.974 9 H 0.051 0.949 10 C -0.016 4.016 11 O -0.313 6.313 12 C -0.030 4.030 13 C 0.024 3.976 14 N -0.331 5.331 15 C -0.392 4.392 16 H 0.085 0.915 17 C -0.235 4.235 18 N -0.575 5.575 19 Si 0.790 3.210 20 H -0.207 1.207 21 H -0.202 1.202 22 H -0.217 1.217 23 N -0.248 5.248 24 C -0.121 4.121 25 C -0.008 4.008 26 O -0.321 6.321 27 C -0.016 4.016 28 C -0.115 4.115 29 H 0.080 0.920 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.109 0.891 34 H 0.080 0.920 35 H 0.254 0.746 36 H 0.065 0.935 37 H 0.071 0.929 38 H 0.133 0.867 39 H 0.062 0.938 40 H 0.127 0.873 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.023 0.977 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.094 0.906 47 H 0.085 0.915 48 H 0.125 0.875 49 H 0.082 0.918 50 H 0.135 0.865 51 H 0.130 0.870 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.397 10.947 -19.685 22.527 hybrid contribution 0.035 0.648 1.875 1.984 sum -0.362 11.595 -17.810 21.255 Atomic orbital electron populations 1.21885 0.89695 1.03687 1.04079 1.21242 0.98236 0.92601 0.87228 1.22228 1.01205 0.95086 1.03603 1.20911 0.76507 0.82263 0.89458 1.90705 1.50612 1.67020 1.37996 1.45937 1.69084 1.06671 1.13785 1.21009 0.99573 0.90890 0.86199 1.21337 0.96674 0.90756 0.88591 0.94864 1.23043 0.96464 0.82073 1.00069 1.87794 1.89358 1.22209 1.31989 1.23145 0.96589 0.98234 0.85045 1.21205 0.93743 0.84539 0.98159 1.44187 1.79522 1.08633 1.00771 1.19348 1.39635 0.94227 0.85979 0.91525 1.25803 0.98565 0.97335 1.01837 1.70112 1.47434 1.10799 1.29200 0.85385 0.77386 0.77947 0.80330 1.20749 1.20208 1.21748 1.62491 1.09717 1.51145 1.01493 1.22942 0.88144 1.00644 1.00414 1.22678 1.00018 0.95552 0.82578 1.87972 1.22541 1.80216 1.41381 1.22851 0.80201 1.00660 0.97886 1.23029 1.02784 0.96844 0.88805 0.92030 0.88193 0.91297 0.93238 0.89081 0.92000 0.74602 0.93454 0.92872 0.86728 0.93847 0.87307 0.93801 0.91332 0.97697 0.93890 0.93761 0.90587 0.91529 0.87539 0.91763 0.86464 0.86987 0.93074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 8.32 71.98 0.60 -1.68 16 2 C 0.10 2.04 0.64 2.78 0.00 2.05 16 3 C -0.16 -3.22 7.28 71.98 0.52 -2.69 16 4 C 0.52 15.61 5.35 87.66 0.47 16.08 16 5 O -0.58 -22.87 16.05 -3.03 -0.05 -22.92 16 6 N -0.70 -20.50 4.36 -463.06 -2.02 -22.52 16 7 C 0.15 5.64 3.89 86.38 0.34 5.98 16 8 C 0.13 5.28 3.17 44.97 0.14 5.43 16 9 H 0.03 1.38 8.14 -2.39 -0.02 1.36 16 10 C 0.06 2.05 6.08 72.08 0.44 2.49 16 11 O -0.39 -14.44 10.74 -148.98 -1.60 -16.04 16 12 C 0.05 1.80 6.97 71.94 0.50 2.30 16 13 C 0.15 7.08 5.35 86.21 0.46 7.54 16 14 N -0.61 -29.74 3.04 -674.51 -2.05 -31.80 16 15 C -0.26 -14.17 8.58 84.03 0.72 -13.45 16 16 H 0.07 3.61 6.34 -2.91 -0.02 3.59 16 17 C -0.04 -2.16 5.08 84.86 0.43 -1.73 16 18 N -0.93 -53.83 11.05 21.65 0.24 -53.60 16 19 Si 0.96 45.20 29.56 68.60 2.03 47.23 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.28 -12.87 7.11 99.48 0.71 -12.16 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 N -0.52 -8.74 3.82 -849.92 -3.25 -11.99 16 24 C 0.01 0.13 4.85 86.31 0.42 0.55 16 25 C 0.07 1.12 7.01 72.02 0.50 1.63 16 26 O -0.40 -7.08 10.83 -148.98 -1.61 -8.70 16 27 C 0.06 0.73 7.01 72.01 0.50 1.24 16 28 C 0.01 0.15 4.87 86.31 0.42 0.57 16 29 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 30 H 0.10 1.06 6.18 -2.39 -0.01 1.04 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.05 1.10 6.54 -2.39 -0.02 1.08 16 33 H 0.09 1.29 6.46 -2.39 -0.02 1.28 16 34 H 0.06 1.41 7.88 -2.38 -0.02 1.39 16 35 H 0.42 10.18 7.24 -92.71 -0.67 9.51 16 36 H 0.05 2.13 7.24 -2.39 -0.02 2.11 16 37 H 0.05 2.21 7.81 -2.39 -0.02 2.19 16 38 H 0.11 2.95 7.61 -2.39 -0.02 2.93 16 39 H 0.04 1.48 8.13 -2.38 -0.02 1.46 16 40 H 0.11 3.49 8.14 -2.39 -0.02 3.47 16 41 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 42 H 0.07 3.62 6.26 -2.39 -0.01 3.60 16 43 H 0.00 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.25 14.16 8.31 -92.70 -0.77 13.39 16 45 H 0.04 0.88 6.52 -2.39 -0.02 0.86 16 46 H 0.08 1.65 6.29 -2.39 -0.02 1.63 16 47 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 48 H 0.11 1.54 8.14 -2.38 -0.02 1.52 16 49 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.12 0.93 8.14 -2.38 -0.02 0.91 16 51 H 0.11 0.92 6.12 -2.39 -0.01 0.91 16 52 H 0.05 0.63 6.44 -2.39 -0.02 0.62 16 Total: -1.00 -68.98 388.02 -1.59 -70.57 By element: Atomic # 1 Polarization: 23.22 SS G_CDS: 0.25 Total: 23.47 kcal Atomic # 6 Polarization: 19.80 SS G_CDS: 6.47 Total: 26.28 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -7.08 Total: -119.90 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -3.26 Total: -47.65 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.23 kcal Total: -68.98 -1.59 -70.57 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280417488.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.165 kcal (2) G-P(sol) polarization free energy of solvation -68.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.567 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds