Wall clock time and date at job start Wed Apr 1 2020 00:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.08997 * 109.47791 * 304.99963 * 3 2 1 5 5 C 1.53003 * 109.47162 * 65.00148 * 3 2 1 6 6 C 1.53002 * 109.47296 * 185.00170 * 3 2 1 7 7 C 1.50700 * 109.47386 * 175.00664 * 6 3 2 8 8 O 1.21286 * 119.99917 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00101 * 180.02562 * 7 6 3 10 10 C 1.47155 * 120.98413 * 359.96855 * 9 7 6 11 11 C 1.53290 * 108.38249 * 129.48724 * 10 9 7 12 12 O 1.42966 * 109.22265 * 52.30617 * 11 10 9 13 13 C 1.42955 * 114.16672 * 297.41654 * 12 11 10 14 14 H 1.08997 * 109.51285 * 302.65378 * 13 12 11 15 15 C 1.53002 * 109.51168 * 182.50421 * 13 12 11 16 16 N 1.46897 * 109.47089 * 65.25417 * 15 13 12 17 17 C 1.46905 * 110.99692 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46697 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00466 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99962 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00063 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00028 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99887 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99963 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47400 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47095 * 120.00075 * 25 23 21 28 28 H 1.48503 * 109.46987 * 239.99764 * 25 23 21 29 29 C 1.47156 * 120.98086 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47489 * 299.99924 * 1 2 3 32 32 H 1.09003 * 109.47222 * 59.99961 * 1 2 3 33 33 H 1.09003 * 109.47275 * 240.00828 * 2 1 3 34 34 H 1.09000 * 109.47583 * 120.00397 * 2 1 3 35 35 H 1.09006 * 109.46870 * 59.99542 * 5 3 2 36 36 H 1.08997 * 109.47308 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.46897 * 300.00185 * 5 3 2 38 38 H 1.08998 * 109.47148 * 55.00134 * 6 3 2 39 39 H 1.09011 * 109.46799 * 295.00030 * 6 3 2 40 40 H 1.08999 * 109.67933 * 249.21522 * 10 9 7 41 41 H 1.08997 * 109.67721 * 9.72800 * 10 9 7 42 42 H 1.09001 * 109.51414 * 172.22577 * 11 10 9 43 43 H 1.08992 * 109.51678 * 292.33225 * 11 10 9 44 44 H 1.09002 * 109.47199 * 185.25336 * 15 13 12 45 45 H 1.08997 * 109.47101 * 305.25205 * 15 13 12 46 46 H 1.00897 * 111.00441 * 56.04854 * 16 15 13 47 47 H 1.08996 * 109.47313 * 299.99505 * 17 16 15 48 48 H 1.08993 * 109.46993 * 60.00369 * 17 16 15 49 49 H 0.96998 * 119.99554 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99740 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.68077 * 350.23278 * 29 9 7 52 52 H 1.08998 * 109.68021 * 110.79006 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2491 8 8 3.2659 3.7827 -0.2380 9 7 5.3760 3.1108 -0.3728 10 6 6.3546 2.0119 -0.3892 11 6 7.2703 2.1982 -1.6043 12 8 7.8047 3.5242 -1.5921 13 6 6.8191 4.5535 -1.7047 14 1 6.2446 4.4089 -2.6197 15 6 7.5084 5.9189 -1.7433 16 7 8.3151 6.0258 -2.9662 17 6 8.9928 7.3273 -3.0377 18 6 9.8092 7.3996 -4.3023 19 8 9.8248 6.4598 -5.0688 20 7 10.5214 8.5092 -4.5821 21 6 11.2638 8.5752 -5.7328 22 1 11.2783 7.7379 -6.4149 23 6 11.9985 9.7189 -6.0210 24 7 11.9813 10.7374 -5.1908 25 14 13.0105 9.8086 -7.5885 26 1 12.8614 8.5408 -8.3472 27 1 12.5340 10.9421 -8.4211 28 1 14.4402 10.0144 -7.2435 29 6 5.8802 4.4879 -0.4952 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0698 1.5874 2.1492 36 1 1.9989 3.1540 1.3076 37 1 0.5489 2.1252 1.3970 38 1 3.8570 0.8801 -1.0114 39 1 4.0029 0.9836 0.7597 40 1 6.9480 2.0352 0.5248 41 1 5.8335 1.0575 -0.4643 42 1 8.0860 1.4766 -1.5596 43 1 6.6977 2.0442 -2.5188 44 1 6.7549 6.7066 -1.7351 45 1 8.1541 6.0247 -0.8716 46 1 7.7504 5.8670 -3.7871 47 1 8.2494 8.1244 -3.0388 48 1 9.6487 7.4432 -2.1751 49 1 10.5081 9.2612 -3.9697 50 1 12.4944 11.5356 -5.3918 51 1 5.0450 5.1729 -0.6413 52 1 6.4258 4.7607 0.4080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001280581189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:17 Heat of formation + Delta-G solvation = -125.613986 kcal Electronic energy + Delta-G solvation = -29628.161841 eV Core-core repulsion = 25434.326641 eV Total energy + Delta-G solvation = -4193.835201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.78712 -38.98234 -38.18623 -36.71964 -35.65353 -34.86418 -33.83330 -32.21023 -31.20090 -31.01217 -28.88546 -28.31262 -26.83011 -25.21560 -24.21554 -23.81102 -22.83038 -21.45627 -20.48343 -19.30488 -19.20500 -17.87382 -17.56861 -17.05254 -16.42563 -16.19368 -15.88537 -15.64355 -15.19724 -15.12510 -14.80242 -14.74050 -14.47110 -14.17642 -14.14972 -13.89647 -13.50918 -13.42589 -13.22562 -12.97655 -12.73037 -12.53696 -12.34861 -12.17273 -12.02060 -11.85905 -11.73111 -11.52221 -11.47609 -11.38917 -11.20209 -11.03233 -11.02794 -10.95180 -10.81625 -10.32253 -10.28885 -10.19843 -9.92740 -9.49153 -8.84962 -8.42457 -8.00856 -7.92423 -6.39077 -3.79668 2.27999 2.49887 3.18368 3.28670 3.36183 3.53379 3.94313 4.01094 4.08413 4.26534 4.30047 4.44710 4.50816 4.58991 4.67687 4.74773 4.83456 4.87921 4.98423 4.99012 5.02859 5.13358 5.16986 5.23744 5.27481 5.28813 5.31687 5.34768 5.37364 5.43025 5.52478 5.57088 5.58356 5.66271 5.67767 5.81152 5.83224 5.84717 5.98702 6.01448 6.03406 6.14997 6.29669 6.98213 7.02302 7.23281 7.58090 7.67979 7.81826 8.09639 8.64600 9.20982 9.57617 10.09337 10.78848 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.001568 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.980097 B =17852.826107 C =17989.676999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.077 4.077 4 H 0.078 0.922 5 C -0.154 4.154 6 C -0.136 4.136 7 C 0.516 3.484 8 O -0.535 6.535 9 N -0.617 5.617 10 C 0.071 3.929 11 C 0.045 3.955 12 O -0.351 6.351 13 C 0.084 3.916 14 H 0.062 0.938 15 C 0.068 3.932 16 N -0.660 5.660 17 C 0.051 3.949 18 C 0.442 3.558 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.103 0.897 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.083 3.917 30 H 0.053 0.947 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.046 0.954 36 H 0.073 0.927 37 H 0.055 0.945 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.093 0.907 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.045 0.955 45 H 0.083 0.917 46 H 0.348 0.652 47 H 0.043 0.957 48 H 0.087 0.913 49 H 0.392 0.608 50 H 0.270 0.730 51 H 0.101 0.899 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.845 -19.631 15.492 31.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.096 4.096 4 H 0.097 0.903 5 C -0.211 4.211 6 C -0.176 4.176 7 C 0.305 3.695 8 O -0.412 6.412 9 N -0.352 5.352 10 C -0.053 4.053 11 C -0.033 4.033 12 O -0.269 6.269 13 C 0.025 3.975 14 H 0.080 0.920 15 C -0.062 4.062 16 N -0.292 5.292 17 C -0.082 4.082 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.202 5.202 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.040 4.040 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.092 0.908 37 H 0.074 0.926 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.098 0.902 41 H 0.111 0.889 42 H 0.125 0.875 43 H 0.073 0.927 44 H 0.063 0.937 45 H 0.101 0.899 46 H 0.167 0.833 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.119 0.881 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -18.423 -19.871 15.247 31.092 hybrid contribution -0.309 1.054 -0.546 1.226 sum -18.732 -18.817 14.702 30.350 Atomic orbital electron populations 1.21806 0.95632 1.01510 1.02155 1.21590 0.96304 0.95947 1.01905 1.20943 0.92503 0.96150 1.00002 0.90343 1.21992 1.01296 1.02052 0.95773 1.21808 0.97957 0.93782 1.04068 1.20767 0.81230 0.91928 0.75547 1.90675 1.53909 1.46739 1.49847 1.48195 1.06171 1.07502 1.73308 1.22540 0.91766 0.90341 1.00610 1.22949 0.97949 0.86227 0.96136 1.88175 1.31652 1.12998 1.94066 1.22455 0.89347 0.89223 0.96464 0.91963 1.21904 0.96025 0.92793 0.95510 1.59971 1.33955 1.31428 1.03834 1.21679 0.97671 0.89896 0.98923 1.19803 0.84829 0.84369 0.88249 1.90525 1.67538 1.37522 1.50993 1.41869 1.41722 1.14776 1.21818 1.19762 1.22497 1.01872 0.98652 0.87878 1.25257 0.98294 0.95152 0.99280 1.69624 1.42350 1.05548 1.36859 0.85800 0.79071 0.78375 0.81096 1.19230 1.20813 1.20756 1.22289 0.98833 0.83673 0.99230 0.92837 0.92378 0.92678 0.91992 0.91959 0.93452 0.90816 0.92616 0.88871 0.88871 0.90247 0.88861 0.87469 0.92713 0.93721 0.89892 0.83307 0.93901 0.89486 0.77467 0.91967 0.88077 0.90434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.67 37.15 0.36 -0.46 16 2 C -0.12 -0.63 5.40 -26.74 -0.14 -0.77 16 3 C -0.08 -0.54 2.04 -90.62 -0.18 -0.72 16 4 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 5 C -0.15 -1.18 8.69 37.16 0.32 -0.86 16 6 C -0.14 -0.85 3.55 -27.88 -0.10 -0.95 16 7 C 0.52 5.01 7.43 -10.99 -0.08 4.93 16 8 O -0.53 -7.01 13.44 5.55 0.07 -6.93 16 9 N -0.62 -5.56 3.02 -172.30 -0.52 -6.08 16 10 C 0.07 0.46 6.54 -3.53 -0.02 0.44 16 11 C 0.05 0.38 6.98 37.31 0.26 0.65 16 12 O -0.35 -4.41 10.34 -35.23 -0.36 -4.77 16 13 C 0.08 0.97 2.96 -26.60 -0.08 0.89 16 14 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 15 C 0.07 0.85 5.35 -3.82 -0.02 0.83 16 16 N -0.66 -11.03 6.08 -115.06 -0.70 -11.73 16 17 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 18 C 0.44 10.66 7.82 -10.98 -0.09 10.57 16 19 O -0.58 -16.16 15.78 5.55 0.09 -16.07 16 20 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 21 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.69 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.78 13.05 55.50 0.72 -24.06 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.24 16 26 H -0.27 -6.14 7.11 56.52 0.40 -5.73 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 29 C 0.08 0.83 5.93 -3.55 -0.02 0.81 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.31 6.57 -51.93 -0.34 -0.03 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 36 H 0.07 0.75 5.95 -51.93 -0.31 0.44 16 37 H 0.05 0.40 6.56 -51.93 -0.34 0.06 16 38 H 0.09 0.44 7.66 -51.93 -0.40 0.04 16 39 H 0.09 0.43 8.02 -51.92 -0.42 0.02 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.09 0.36 6.05 -51.93 -0.31 0.05 16 42 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.35 6.00 8.43 -39.29 -0.33 5.67 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 49 H 0.39 9.62 7.90 -40.82 -0.32 9.30 16 50 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 51 H 0.10 1.09 7.08 -51.93 -0.37 0.72 16 52 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 413.18 15.07 6.23 6.23 Total: -1.00 -34.43 413.18 -8.60 -43.03 By element: Atomic # 1 Polarization: 19.61 SS G_CDS: -8.98 Total: 10.63 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.07 Total: 8.14 kcal Atomic # 7 Polarization: -55.92 SS G_CDS: -0.55 Total: -56.48 kcal Atomic # 8 Polarization: -27.58 SS G_CDS: -0.20 Total: -27.78 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.43 -8.60 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280581189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.582 kcal (2) G-P(sol) polarization free energy of solvation -34.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.012 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds