Wall clock time and date at job start Wed Apr 1 2020 00:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47090 * 2 1 4 4 H 1.08997 * 109.47791 * 304.99963 * 3 2 1 5 5 C 1.53003 * 109.47162 * 65.00148 * 3 2 1 6 6 C 1.53002 * 109.47296 * 185.00170 * 3 2 1 7 7 C 1.50700 * 109.47386 * 175.00664 * 6 3 2 8 8 O 1.21286 * 119.99917 * 359.97438 * 7 6 3 9 9 N 1.34772 * 120.00101 * 180.02562 * 7 6 3 10 10 C 1.47155 * 120.98413 * 359.96855 * 9 7 6 11 11 C 1.53290 * 108.38249 * 129.48724 * 10 9 7 12 12 O 1.42966 * 109.22265 * 52.30617 * 11 10 9 13 13 C 1.42955 * 114.16672 * 297.41654 * 12 11 10 14 14 H 1.08997 * 109.51285 * 302.65378 * 13 12 11 15 15 C 1.53002 * 109.51168 * 182.50421 * 13 12 11 16 16 N 1.46897 * 109.47089 * 65.25417 * 15 13 12 17 17 C 1.46905 * 110.99692 * 179.97438 * 16 15 13 18 18 C 1.50697 * 109.46697 * 179.97438 * 17 16 15 19 19 O 1.21291 * 120.00466 * 0.02562 * 18 17 16 20 20 N 1.34783 * 119.99962 * 179.97438 * 18 17 16 21 21 C 1.37101 * 120.00063 * 180.02562 * 20 18 17 22 22 H 1.08003 * 120.00028 * 359.97438 * 21 20 18 23 23 C 1.38953 * 119.99887 * 180.02562 * 21 20 18 24 24 N 1.31414 * 119.99963 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 119.99854 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47400 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47095 * 120.00075 * 25 23 21 28 28 H 1.48503 * 109.46987 * 239.99764 * 25 23 21 29 29 C 1.47156 * 120.98086 * 179.97438 * 9 7 6 30 30 H 1.08997 * 109.47509 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47489 * 299.99924 * 1 2 3 32 32 H 1.09003 * 109.47222 * 59.99961 * 1 2 3 33 33 H 1.09003 * 109.47275 * 240.00828 * 2 1 3 34 34 H 1.09000 * 109.47583 * 120.00397 * 2 1 3 35 35 H 1.09006 * 109.46870 * 59.99542 * 5 3 2 36 36 H 1.08997 * 109.47308 * 179.97438 * 5 3 2 37 37 H 1.09002 * 109.46897 * 300.00185 * 5 3 2 38 38 H 1.08998 * 109.47148 * 55.00134 * 6 3 2 39 39 H 1.09011 * 109.46799 * 295.00030 * 6 3 2 40 40 H 1.08999 * 109.67933 * 249.21522 * 10 9 7 41 41 H 1.08997 * 109.67721 * 9.72800 * 10 9 7 42 42 H 1.09001 * 109.51414 * 172.22577 * 11 10 9 43 43 H 1.08992 * 109.51678 * 292.33225 * 11 10 9 44 44 H 1.09002 * 109.47199 * 185.25336 * 15 13 12 45 45 H 1.08997 * 109.47101 * 305.25205 * 15 13 12 46 46 H 1.00897 * 111.00441 * 56.04854 * 16 15 13 47 47 H 1.08996 * 109.47313 * 299.99505 * 17 16 15 48 48 H 1.08993 * 109.46993 * 60.00369 * 17 16 15 49 49 H 0.96998 * 119.99554 * 359.97438 * 20 18 17 50 50 H 0.96999 * 119.99740 * 179.97438 * 24 23 21 51 51 H 1.09001 * 109.68077 * 350.23278 * 29 9 7 52 52 H 1.08998 * 109.68021 * 110.79006 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9816 -0.8418 5 6 1.6352 2.1265 1.3074 6 6 3.5648 1.4444 -0.1258 7 6 4.0569 2.8634 -0.2491 8 8 3.2659 3.7827 -0.2380 9 7 5.3760 3.1108 -0.3728 10 6 6.3546 2.0119 -0.3892 11 6 7.2703 2.1982 -1.6043 12 8 7.8047 3.5242 -1.5921 13 6 6.8191 4.5535 -1.7047 14 1 6.2446 4.4089 -2.6197 15 6 7.5084 5.9189 -1.7433 16 7 8.3151 6.0258 -2.9662 17 6 8.9928 7.3273 -3.0377 18 6 9.8092 7.3996 -4.3023 19 8 9.8248 6.4598 -5.0688 20 7 10.5214 8.5092 -4.5821 21 6 11.2638 8.5752 -5.7328 22 1 11.2783 7.7379 -6.4149 23 6 11.9985 9.7189 -6.0210 24 7 11.9813 10.7374 -5.1908 25 14 13.0105 9.8086 -7.5885 26 1 12.8614 8.5408 -8.3472 27 1 12.5340 10.9421 -8.4211 28 1 14.4402 10.0144 -7.2435 29 6 5.8802 4.4879 -0.4952 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5137 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.0698 1.5874 2.1492 36 1 1.9989 3.1540 1.3076 37 1 0.5489 2.1252 1.3970 38 1 3.8570 0.8801 -1.0114 39 1 4.0029 0.9836 0.7597 40 1 6.9480 2.0352 0.5248 41 1 5.8335 1.0575 -0.4643 42 1 8.0860 1.4766 -1.5596 43 1 6.6977 2.0442 -2.5188 44 1 6.7549 6.7066 -1.7351 45 1 8.1541 6.0247 -0.8716 46 1 7.7504 5.8670 -3.7871 47 1 8.2494 8.1244 -3.0388 48 1 9.6487 7.4432 -2.1751 49 1 10.5081 9.2612 -3.9697 50 1 12.4944 11.5356 -5.3918 51 1 5.0450 5.1729 -0.6413 52 1 6.4258 4.7607 0.4080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001280581189.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:16 Heat of formation + Delta-G solvation = -151.193057 kcal Electronic energy + Delta-G solvation = -29629.271033 eV Core-core repulsion = 25434.326641 eV Total energy + Delta-G solvation = -4194.944393 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.52017 -40.19181 -39.67162 -37.28893 -36.87374 -35.90612 -35.65595 -33.34219 -33.01332 -31.58246 -29.69084 -29.20351 -27.95330 -26.60735 -25.21600 -24.63525 -23.78566 -22.34862 -21.10636 -20.97636 -19.96615 -19.90805 -18.31783 -18.02559 -17.65573 -17.16465 -16.81836 -16.65799 -16.39301 -16.29112 -15.90003 -15.84030 -15.54397 -15.27167 -15.12938 -14.85629 -14.74085 -14.43554 -14.32104 -13.97999 -13.54892 -13.53350 -13.22796 -13.21832 -13.08492 -12.86474 -12.79111 -12.73261 -12.64079 -12.40484 -12.23412 -12.17707 -12.11218 -11.75935 -11.59708 -11.54870 -11.51551 -11.39881 -11.12828 -10.66306 -10.35716 -10.01536 -9.59710 -9.31583 -8.46799 -5.95619 1.36791 1.41948 1.56339 1.57511 1.82803 2.04999 2.29389 2.75541 2.87712 3.20431 3.43969 3.50340 3.77342 3.82962 3.89275 3.96709 3.99009 4.04316 4.21197 4.23456 4.31023 4.35999 4.44045 4.44835 4.50599 4.56472 4.58944 4.60557 4.65577 4.66307 4.71614 4.80073 4.82498 4.85370 4.91403 4.98263 5.14216 5.17460 5.23587 5.30453 5.32344 5.41074 5.52041 5.58580 5.85541 6.07567 6.22447 6.31587 6.39202 6.60191 7.11354 7.12606 7.55967 8.11546 8.70866 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030133 B = 0.001568 C = 0.001556 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.980097 B =17852.826107 C =17989.676999 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.114 4.114 3 C -0.076 4.076 4 H 0.054 0.946 5 C -0.151 4.151 6 C -0.130 4.130 7 C 0.509 3.491 8 O -0.577 6.577 9 N -0.619 5.619 10 C 0.074 3.926 11 C 0.037 3.963 12 O -0.380 6.380 13 C 0.092 3.908 14 H 0.050 0.950 15 C 0.070 3.930 16 N -0.677 5.677 17 C 0.066 3.934 18 C 0.437 3.563 19 O -0.624 6.624 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.270 1.270 28 H -0.270 1.270 29 C 0.089 3.911 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.045 0.955 37 H 0.055 0.945 38 H 0.115 0.885 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.050 0.950 44 H 0.063 0.937 45 H 0.089 0.911 46 H 0.341 0.659 47 H 0.069 0.931 48 H 0.105 0.895 49 H 0.397 0.603 50 H 0.278 0.722 51 H 0.089 0.911 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.757 -21.046 16.565 32.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.151 4.151 3 C -0.095 4.095 4 H 0.072 0.928 5 C -0.208 4.208 6 C -0.170 4.170 7 C 0.300 3.700 8 O -0.457 6.457 9 N -0.353 5.353 10 C -0.048 4.048 11 C -0.040 4.040 12 O -0.299 6.299 13 C 0.033 3.967 14 H 0.068 0.932 15 C -0.060 4.060 16 N -0.309 5.309 17 C -0.067 4.067 18 C 0.225 3.775 19 O -0.510 6.510 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.212 4.212 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.198 1.198 27 H -0.196 1.196 28 H -0.195 1.195 29 C -0.035 4.035 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.108 0.892 41 H 0.145 0.855 42 H 0.142 0.858 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.107 0.893 46 H 0.159 0.841 47 H 0.087 0.913 48 H 0.123 0.877 49 H 0.231 0.769 50 H 0.087 0.913 51 H 0.107 0.893 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.330 -21.290 16.356 32.509 hybrid contribution -0.362 1.461 -0.855 1.731 sum -18.692 -19.829 15.502 31.351 Atomic orbital electron populations 1.21828 0.96004 1.01928 1.01610 1.21553 0.95972 0.94617 1.03001 1.20908 0.93144 0.96973 0.98493 0.92774 1.21940 1.01344 1.00642 0.96877 1.21868 0.97275 0.91620 1.06209 1.21447 0.80974 0.93001 0.74568 1.90664 1.54978 1.48293 1.51765 1.48326 1.06579 1.07643 1.72711 1.22693 0.91250 0.90837 0.99972 1.23198 0.99001 0.84757 0.97011 1.88121 1.32840 1.14667 1.94256 1.22310 0.89129 0.88713 0.96567 0.93213 1.21987 0.96185 0.94160 0.93628 1.59965 1.35122 1.30709 1.05076 1.21538 0.97761 0.91596 0.95759 1.20880 0.84084 0.83005 0.89531 1.90490 1.68753 1.38809 1.52955 1.41931 1.42083 1.15549 1.21465 1.19718 1.24795 1.02055 0.99883 0.90384 1.26042 0.98634 0.94324 1.02208 1.69680 1.42539 1.05851 1.38032 0.84860 0.77867 0.78229 0.77302 1.19840 1.19555 1.19541 1.22114 0.98043 0.84572 0.98777 0.91896 0.92719 0.93524 0.91000 0.90640 0.92099 0.93636 0.92609 0.86666 0.86306 0.89210 0.85518 0.85755 0.93121 0.91885 0.89264 0.84069 0.91338 0.87698 0.76929 0.91287 0.89263 0.89637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.46 9.67 71.98 0.70 -0.77 16 2 C -0.11 -0.93 5.40 30.59 0.17 -0.77 16 3 C -0.08 -0.96 2.04 -10.79 -0.02 -0.99 16 4 H 0.05 0.95 7.95 -2.39 -0.02 0.93 16 5 C -0.15 -2.23 8.69 71.98 0.63 -1.61 16 6 C -0.13 -1.31 3.55 29.85 0.11 -1.20 16 7 C 0.51 9.37 7.43 87.66 0.65 10.02 16 8 O -0.58 -15.45 13.44 -3.05 -0.04 -15.49 16 9 N -0.62 -10.26 3.02 -817.41 -2.47 -12.73 16 10 C 0.07 0.77 6.54 86.35 0.56 1.33 16 11 C 0.04 0.57 6.98 72.08 0.50 1.08 16 12 O -0.38 -9.23 10.34 -148.98 -1.54 -10.77 16 13 C 0.09 2.07 2.96 30.68 0.09 2.16 16 14 H 0.05 1.22 8.14 -2.39 -0.02 1.21 16 15 C 0.07 1.67 5.35 86.30 0.46 2.14 16 16 N -0.68 -22.39 6.08 -517.94 -3.15 -25.54 16 17 C 0.07 2.31 6.17 85.56 0.53 2.84 16 18 C 0.44 21.40 7.82 87.66 0.69 22.08 16 19 O -0.62 -35.63 15.78 -3.06 -0.05 -35.68 16 20 N -0.57 -29.99 5.29 -306.97 -1.62 -31.61 16 21 C -0.33 -19.38 9.68 84.04 0.81 -18.56 16 22 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 23 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 24 N -0.92 -50.10 13.05 21.66 0.28 -49.81 16 25 Si 0.99 43.42 29.55 68.60 2.03 45.44 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 29 C 0.09 1.72 5.93 86.34 0.51 2.23 16 30 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 31 H 0.05 0.54 6.57 -2.38 -0.02 0.52 16 32 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 34 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.71 8.14 -2.38 -0.02 0.69 16 36 H 0.04 0.95 5.95 -2.39 -0.01 0.93 16 37 H 0.05 0.79 6.56 -2.39 -0.02 0.77 16 38 H 0.12 0.68 7.66 -2.39 -0.02 0.66 16 39 H 0.12 0.63 8.02 -2.38 -0.02 0.61 16 40 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.13 0.45 6.05 -2.39 -0.01 0.44 16 42 H 0.12 1.43 8.14 -2.39 -0.02 1.41 16 43 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 44 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 45 H 0.09 2.04 8.14 -2.39 -0.02 2.02 16 46 H 0.34 11.93 8.43 -89.70 -0.76 11.18 16 47 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.10 3.34 8.14 -2.39 -0.02 3.32 16 49 H 0.40 19.63 7.90 -92.71 -0.73 18.89 16 50 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 51 H 0.09 1.95 7.08 -2.39 -0.02 1.93 16 52 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 Total: -1.00 -76.81 413.18 -0.28 -77.08 By element: Atomic # 1 Polarization: 39.89 SS G_CDS: -0.56 Total: 39.32 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 6.85 Total: 19.78 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -6.96 Total: -119.69 kcal Atomic # 8 Polarization: -60.31 SS G_CDS: -1.63 Total: -61.94 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.81 -0.28 -77.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001280581189.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.111 kcal (2) G-P(sol) polarization free energy of solvation -76.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds