Wall clock time and date at job start Wed Apr 1 2020 00:36:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46871 * 2 1 4 4 H 1.08993 * 109.46976 * 55.00371 * 3 2 1 5 5 C 1.52998 * 109.46864 * 294.99673 * 3 2 1 6 6 C 1.50703 * 109.46642 * 174.99977 * 3 2 1 7 7 O 1.21281 * 120.00169 * 28.29664 * 6 3 2 8 8 N 1.34777 * 119.99386 * 208.29361 * 6 3 2 9 9 C 1.46919 * 120.63676 * 355.01488 * 8 6 3 10 10 C 1.53189 * 108.77863 * 233.58848 * 9 8 6 11 11 C 1.53113 * 109.33029 * 305.36378 * 10 9 8 12 12 C 1.53038 * 109.50226 * 61.34233 * 11 10 9 13 13 C 1.52999 * 109.49572 * 178.68838 * 12 11 10 14 14 O 1.42898 * 109.47039 * 298.26943 * 13 12 11 15 15 N 1.46894 * 109.50071 * 58.62193 * 12 11 10 16 16 C 1.46897 * 111.00411 * 174.62398 * 15 12 11 17 17 C 1.50700 * 109.47296 * 176.61661 * 16 15 12 18 18 O 1.21288 * 119.99836 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99805 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99922 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99644 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99782 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00440 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47130 * 240.00120 * 24 22 20 27 27 H 1.48495 * 109.47238 * 119.99864 * 24 22 20 28 28 C 1.46934 * 120.62643 * 174.99233 * 8 6 3 29 29 H 1.09002 * 109.47596 * 300.00338 * 1 2 3 30 30 H 1.09004 * 109.47473 * 59.99784 * 1 2 3 31 31 H 1.09001 * 109.47457 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47149 * 240.00152 * 2 1 3 33 33 H 1.08996 * 109.47058 * 119.99785 * 2 1 3 34 34 H 1.08996 * 109.47119 * 65.35980 * 5 3 2 35 35 H 1.09008 * 109.46671 * 185.35432 * 5 3 2 36 36 H 1.08994 * 109.47294 * 305.35540 * 5 3 2 37 37 H 1.08997 * 109.58298 * 353.37507 * 9 8 6 38 38 H 1.09005 * 109.58982 * 113.79717 * 9 8 6 39 39 H 1.08994 * 109.49971 * 65.31327 * 10 9 8 40 40 H 1.08998 * 109.50197 * 185.38079 * 10 9 8 41 41 H 1.09000 * 109.44690 * 301.35066 * 11 10 9 42 42 H 1.08993 * 109.50605 * 181.36952 * 11 10 9 43 43 H 1.09003 * 109.47337 * 58.27203 * 13 12 11 44 44 H 1.09006 * 109.47034 * 178.27306 * 13 12 11 45 45 H 0.96700 * 113.99697 * 180.02562 * 14 13 12 46 46 H 1.00898 * 110.99773 * 50.66279 * 15 12 11 47 47 H 1.09009 * 109.47179 * 56.61637 * 16 15 12 48 48 H 1.09001 * 109.47069 * 296.62145 * 16 15 12 49 49 H 0.97008 * 120.00186 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99889 * 359.97438 * 23 22 20 51 51 H 1.09000 * 109.58742 * 6.62600 * 28 8 6 52 52 H 1.08998 * 109.58589 * 246.19871 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1860 0.5062 -0.2954 8 7 4.1691 2.4886 0.7005 9 6 3.4148 3.6794 1.1145 10 6 4.0634 4.9170 0.4865 11 6 5.5486 4.9538 0.8566 12 6 6.2444 3.7088 0.3016 13 6 7.7348 3.7617 0.6433 14 8 8.3240 4.9092 0.0283 15 7 6.0771 3.6628 -1.1571 16 6 6.8393 2.5503 -1.7396 17 6 6.5780 2.4843 -3.2223 18 8 5.8300 3.2850 -3.7425 19 7 7.1754 1.5357 -3.9703 20 6 6.9381 1.4760 -5.3193 21 1 6.2721 2.1889 -5.7824 22 6 7.5545 0.4982 -6.0905 23 7 8.3645 -0.3695 -5.5268 24 14 7.2306 0.4164 -7.9284 25 1 6.2870 1.4966 -8.3133 26 1 6.6381 -0.9022 -8.2684 27 1 8.5086 0.5895 -8.6645 28 6 5.6205 2.4575 0.9276 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5494 2.2104 -1.3526 35 1 2.0785 3.1215 -1.3492 36 1 1.9894 1.5351 -2.1516 37 1 2.3829 3.5949 0.7737 38 1 3.4370 3.7667 2.2009 39 1 3.9598 4.8715 -0.5975 40 1 3.5724 5.8150 0.8615 41 1 5.6519 4.9743 1.9415 42 1 6.0077 5.8462 0.4314 43 1 7.8577 3.8256 1.7245 44 1 8.2243 2.8603 0.2746 45 1 9.2702 5.0064 0.2024 46 1 6.3395 4.5410 -1.5789 47 1 6.5296 1.6145 -1.2741 48 1 7.9036 2.7082 -1.5649 49 1 7.7740 0.8955 -3.5543 50 1 8.5324 -0.3273 -4.5724 51 1 6.0440 1.5668 0.4634 52 1 5.8226 2.4451 1.9986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001281106173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:16 Heat of formation + Delta-G solvation = -124.746800 kcal Electronic energy + Delta-G solvation = -32607.362682 eV Core-core repulsion = 28413.565085 eV Total energy + Delta-G solvation = -4193.797597 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.64293 -38.95483 -37.89252 -36.46891 -35.41859 -34.63547 -33.97523 -32.32043 -30.99894 -30.56867 -29.61490 -26.50046 -26.19916 -25.75811 -24.66302 -23.78597 -22.16858 -21.49884 -19.60161 -19.33124 -18.45098 -17.77093 -17.53097 -17.30041 -16.55917 -15.90918 -15.52180 -15.16856 -15.05668 -14.86384 -14.66196 -14.34619 -14.11523 -14.01897 -13.68917 -13.48593 -13.46793 -13.18037 -12.89576 -12.70048 -12.53319 -12.26744 -12.12102 -12.01994 -11.82800 -11.70681 -11.58233 -11.53356 -11.07372 -10.99346 -10.95595 -10.84469 -10.75903 -10.66484 -10.43153 -10.16726 -10.10435 -9.76486 -9.46249 -9.42845 -8.53754 -8.37788 -7.94174 -7.88411 -6.64245 -3.76081 2.78772 3.03341 3.38973 3.40287 3.59945 3.94668 4.01352 4.22082 4.37991 4.49708 4.63101 4.70036 4.72314 4.91321 4.94394 5.01796 5.05417 5.13218 5.19646 5.24625 5.26458 5.32684 5.35975 5.40615 5.42779 5.50416 5.55394 5.58671 5.66714 5.70955 5.76237 5.83935 5.89505 5.92873 5.99640 6.05582 6.06103 6.12286 6.20685 6.28525 6.32696 6.41035 6.54590 7.26740 7.43113 7.50750 7.75318 7.93853 8.19843 8.37252 8.73657 8.93747 9.61207 10.02850 10.79678 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004168 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.360568 B = 6715.813739 C = 8933.357913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.108 4.108 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.142 4.142 6 C 0.525 3.475 7 O -0.534 6.534 8 N -0.596 5.596 9 C 0.110 3.890 10 C -0.132 4.132 11 C -0.100 4.100 12 C 0.103 3.897 13 C 0.044 3.956 14 O -0.565 6.565 15 N -0.637 5.637 16 C 0.046 3.954 17 C 0.453 3.547 18 O -0.577 6.577 19 N -0.578 5.578 20 C -0.378 4.378 21 H 0.098 0.902 22 C -0.012 4.012 23 N -0.905 5.905 24 Si 1.096 2.904 25 H -0.284 1.284 26 H -0.284 1.284 27 H -0.285 1.285 28 C 0.125 3.875 29 H 0.051 0.949 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.063 0.937 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.087 0.913 40 H 0.068 0.932 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.379 0.621 46 H 0.354 0.646 47 H 0.088 0.912 48 H 0.041 0.959 49 H 0.374 0.626 50 H 0.261 0.739 51 H 0.095 0.905 52 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.746 7.642 19.963 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.127 4.127 4 H 0.105 0.895 5 C -0.199 4.199 6 C 0.313 3.687 7 O -0.410 6.410 8 N -0.329 5.329 9 C -0.013 4.013 10 C -0.170 4.170 11 C -0.138 4.138 12 C 0.010 3.990 13 C -0.036 4.036 14 O -0.370 6.370 15 N -0.270 5.270 16 C -0.086 4.086 17 C 0.238 3.762 18 O -0.460 6.460 19 N -0.216 5.216 20 C -0.507 4.507 21 H 0.116 0.884 22 C -0.214 4.214 23 N -0.545 5.545 24 Si 0.922 3.078 25 H -0.210 1.210 26 H -0.211 1.211 27 H -0.211 1.211 28 C 0.002 3.998 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.094 0.906 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.104 0.896 38 H 0.080 0.920 39 H 0.106 0.894 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.092 0.908 43 H 0.065 0.935 44 H 0.069 0.931 45 H 0.226 0.774 46 H 0.175 0.825 47 H 0.106 0.894 48 H 0.059 0.941 49 H 0.207 0.793 50 H 0.072 0.928 51 H 0.113 0.887 52 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -9.771 6.569 17.763 21.311 hybrid contribution 1.693 0.763 2.095 2.799 sum -8.079 7.332 19.858 22.657 Atomic orbital electron populations 1.21815 0.95500 1.01759 1.01784 1.21385 0.95445 0.94405 1.03330 1.21330 0.91893 0.98984 1.00534 0.89542 1.21771 1.01318 1.01054 0.95805 1.20605 0.90155 0.81703 0.76213 1.90701 1.67649 1.35744 1.46900 1.47705 1.07136 1.16964 1.61094 1.21746 0.96061 0.85012 0.98526 1.21870 0.95182 0.96558 1.03405 1.21465 0.95498 0.97146 0.99706 1.21368 0.90915 0.96169 0.90565 1.22894 0.95738 0.88622 0.96353 1.86450 1.27609 1.46378 1.76535 1.60160 1.58874 1.07469 1.00447 1.21754 0.95522 0.96178 0.95169 1.19668 0.84844 0.84234 0.87419 1.90502 1.39535 1.42537 1.73440 1.41916 1.42299 1.28738 1.08675 1.20572 1.29463 1.17643 0.83036 0.88420 1.26460 0.94658 0.92531 1.07707 1.70823 1.34926 1.35903 1.12831 0.83058 0.76241 0.76209 0.72245 1.21005 1.21068 1.21123 1.21463 0.81142 0.98399 0.98836 0.92961 0.92262 0.92581 0.90623 0.92010 0.91639 0.91777 0.91471 0.89635 0.92001 0.89416 0.91335 0.91924 0.90763 0.93504 0.93068 0.77401 0.82532 0.89420 0.94148 0.79331 0.92768 0.88718 0.91577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.11 -1.26 4.89 -26.73 -0.13 -1.39 16 3 C -0.11 -1.26 1.86 -91.77 -0.17 -1.43 16 4 H 0.09 0.79 6.55 -51.93 -0.34 0.45 16 5 C -0.14 -1.76 8.55 37.16 0.32 -1.45 16 6 C 0.52 8.00 6.76 -10.98 -0.07 7.93 16 7 O -0.53 -10.50 15.66 5.56 0.09 -10.42 16 8 N -0.60 -7.61 2.89 -172.76 -0.50 -8.11 16 9 C 0.11 1.03 6.07 -3.72 -0.02 1.01 16 10 C -0.13 -1.34 5.93 -26.58 -0.16 -1.49 16 11 C -0.10 -1.05 4.67 -26.65 -0.12 -1.17 16 12 C 0.10 1.29 0.39 -131.48 -0.05 1.23 16 13 C 0.04 0.49 5.33 37.16 0.20 0.68 16 14 O -0.56 -6.44 12.59 -35.23 -0.44 -6.88 16 15 N -0.64 -10.72 4.69 -101.10 -0.47 -11.20 16 16 C 0.05 0.90 5.31 -4.98 -0.03 0.87 16 17 C 0.45 11.53 7.83 -10.99 -0.09 11.45 16 18 O -0.58 -16.61 15.85 5.55 0.09 -16.53 16 19 N -0.58 -15.65 5.28 -10.97 -0.06 -15.71 16 20 C -0.38 -11.22 9.68 -14.93 -0.14 -11.36 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 22 C -0.01 -0.33 5.50 -17.47 -0.10 -0.43 16 23 N -0.91 -26.63 13.68 55.50 0.76 -25.87 16 24 Si 1.10 25.59 29.92 -169.99 -5.09 20.50 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 C 0.13 1.58 5.07 -3.70 -0.02 1.56 16 29 H 0.05 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.52 6.69 -51.93 -0.35 0.17 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.08 1.07 8.02 -51.93 -0.42 0.65 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.06 0.64 6.83 -51.93 -0.35 0.29 16 35 H 0.06 0.83 7.56 -51.92 -0.39 0.44 16 36 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.09 0.72 5.05 -51.93 -0.26 0.45 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.09 1.17 7.53 -51.93 -0.39 0.78 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.85 7.69 -51.93 -0.40 0.45 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.05 0.59 6.51 -51.93 -0.34 0.25 16 45 H 0.38 2.75 9.12 45.56 0.42 3.17 16 46 H 0.35 6.50 8.13 -39.29 -0.32 6.19 16 47 H 0.09 1.74 6.20 -51.92 -0.32 1.42 16 48 H 0.04 0.72 6.47 -51.93 -0.34 0.39 16 49 H 0.37 9.53 6.73 -40.82 -0.27 9.25 16 50 H 0.26 7.46 6.77 -40.82 -0.28 7.18 16 51 H 0.09 1.44 5.10 -51.93 -0.26 1.18 16 52 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 400.81 15.07 6.04 6.04 Total: -1.00 -37.04 400.81 -7.41 -44.45 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -7.60 Total: 18.70 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: -0.23 Total: 5.01 kcal Atomic # 7 Polarization: -60.61 SS G_CDS: -0.27 Total: -60.88 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.27 Total: -33.82 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.09 Total: 20.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -37.04 -7.41 -44.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281106173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.294 kcal (2) G-P(sol) polarization free energy of solvation -37.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.747 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds