Wall clock time and date at job start Wed Apr 1 2020 00:36:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.46871 * 2 1 4 4 H 1.08993 * 109.46976 * 55.00371 * 3 2 1 5 5 C 1.52998 * 109.46864 * 294.99673 * 3 2 1 6 6 C 1.50703 * 109.46642 * 174.99977 * 3 2 1 7 7 O 1.21281 * 120.00169 * 28.29664 * 6 3 2 8 8 N 1.34777 * 119.99386 * 208.29361 * 6 3 2 9 9 C 1.46919 * 120.63676 * 355.01488 * 8 6 3 10 10 C 1.53189 * 108.77863 * 233.58848 * 9 8 6 11 11 C 1.53113 * 109.33029 * 305.36378 * 10 9 8 12 12 C 1.53038 * 109.50226 * 61.34233 * 11 10 9 13 13 C 1.52999 * 109.49572 * 178.68838 * 12 11 10 14 14 O 1.42898 * 109.47039 * 298.26943 * 13 12 11 15 15 N 1.46894 * 109.50071 * 58.62193 * 12 11 10 16 16 C 1.46897 * 111.00411 * 174.62398 * 15 12 11 17 17 C 1.50700 * 109.47296 * 176.61661 * 16 15 12 18 18 O 1.21288 * 119.99836 * 359.97438 * 17 16 15 19 19 N 1.34774 * 119.99805 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99922 * 180.02562 * 19 17 16 21 21 H 1.07993 * 119.99644 * 359.97438 * 20 19 17 22 22 C 1.38945 * 119.99782 * 179.97438 * 20 19 17 23 23 N 1.31408 * 120.00440 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99791 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47013 * 359.97438 * 24 22 20 26 26 H 1.48507 * 109.47130 * 240.00120 * 24 22 20 27 27 H 1.48495 * 109.47238 * 119.99864 * 24 22 20 28 28 C 1.46934 * 120.62643 * 174.99233 * 8 6 3 29 29 H 1.09002 * 109.47596 * 300.00338 * 1 2 3 30 30 H 1.09004 * 109.47473 * 59.99784 * 1 2 3 31 31 H 1.09001 * 109.47457 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47149 * 240.00152 * 2 1 3 33 33 H 1.08996 * 109.47058 * 119.99785 * 2 1 3 34 34 H 1.08996 * 109.47119 * 65.35980 * 5 3 2 35 35 H 1.09008 * 109.46671 * 185.35432 * 5 3 2 36 36 H 1.08994 * 109.47294 * 305.35540 * 5 3 2 37 37 H 1.08997 * 109.58298 * 353.37507 * 9 8 6 38 38 H 1.09005 * 109.58982 * 113.79717 * 9 8 6 39 39 H 1.08994 * 109.49971 * 65.31327 * 10 9 8 40 40 H 1.08998 * 109.50197 * 185.38079 * 10 9 8 41 41 H 1.09000 * 109.44690 * 301.35066 * 11 10 9 42 42 H 1.08993 * 109.50605 * 181.36952 * 11 10 9 43 43 H 1.09003 * 109.47337 * 58.27203 * 13 12 11 44 44 H 1.09006 * 109.47034 * 178.27306 * 13 12 11 45 45 H 0.96700 * 113.99697 * 180.02562 * 14 13 12 46 46 H 1.00898 * 110.99773 * 50.66279 * 15 12 11 47 47 H 1.09009 * 109.47179 * 56.61637 * 16 15 12 48 48 H 1.09001 * 109.47069 * 296.62145 * 16 15 12 49 49 H 0.97008 * 120.00186 * 359.97438 * 19 17 16 50 50 H 0.97001 * 119.99889 * 359.97438 * 23 22 20 51 51 H 1.09000 * 109.58742 * 6.62600 * 28 8 6 52 52 H 1.08998 * 109.58589 * 246.19871 * 28 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5419 1.4443 0.1238 7 8 4.1860 0.5062 -0.2954 8 7 4.1691 2.4886 0.7005 9 6 3.4148 3.6794 1.1145 10 6 4.0634 4.9170 0.4865 11 6 5.5486 4.9538 0.8566 12 6 6.2444 3.7088 0.3016 13 6 7.7348 3.7617 0.6433 14 8 8.3240 4.9092 0.0283 15 7 6.0771 3.6628 -1.1571 16 6 6.8393 2.5503 -1.7396 17 6 6.5780 2.4843 -3.2223 18 8 5.8300 3.2850 -3.7425 19 7 7.1754 1.5357 -3.9703 20 6 6.9381 1.4760 -5.3193 21 1 6.2721 2.1889 -5.7824 22 6 7.5545 0.4982 -6.0905 23 7 8.3645 -0.3695 -5.5268 24 14 7.2306 0.4164 -7.9284 25 1 6.2870 1.4966 -8.3133 26 1 6.6381 -0.9022 -8.2684 27 1 8.5086 0.5895 -8.6645 28 6 5.6205 2.4575 0.9276 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5494 2.2104 -1.3526 35 1 2.0785 3.1215 -1.3492 36 1 1.9894 1.5351 -2.1516 37 1 2.3829 3.5949 0.7737 38 1 3.4370 3.7667 2.2009 39 1 3.9598 4.8715 -0.5975 40 1 3.5724 5.8150 0.8615 41 1 5.6519 4.9743 1.9415 42 1 6.0077 5.8462 0.4314 43 1 7.8577 3.8256 1.7245 44 1 8.2243 2.8603 0.2746 45 1 9.2702 5.0064 0.2024 46 1 6.3395 4.5410 -1.5789 47 1 6.5296 1.6145 -1.2741 48 1 7.9036 2.7082 -1.5649 49 1 7.7740 0.8955 -3.5543 50 1 8.5324 -0.3273 -4.5724 51 1 6.0440 1.5668 0.4634 52 1 5.8226 2.4451 1.9986 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001281106173.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:36:15 Heat of formation + Delta-G solvation = -155.288476 kcal Electronic energy + Delta-G solvation = -32608.687068 eV Core-core repulsion = 28413.565085 eV Total energy + Delta-G solvation = -4195.121983 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.71217 -40.43247 -39.57818 -37.38254 -36.51348 -36.43116 -35.51280 -33.42931 -33.06541 -31.74059 -30.57056 -28.06120 -27.17718 -26.89014 -25.82067 -25.48495 -23.14254 -22.43452 -21.52729 -20.43657 -19.99611 -19.45908 -18.49450 -18.40942 -18.12199 -17.02038 -16.98380 -16.67224 -16.21966 -16.12717 -15.97990 -15.72641 -15.47358 -15.16333 -15.02048 -14.99748 -14.47780 -14.34304 -14.11590 -13.86111 -13.64968 -13.38935 -13.27382 -13.18910 -13.06980 -13.04507 -12.79450 -12.75532 -12.62399 -12.51670 -11.99548 -11.92284 -11.89833 -11.84825 -11.66387 -11.55655 -11.55261 -11.38528 -10.96371 -10.61660 -10.44176 -10.14075 -9.55931 -9.28707 -8.97748 -6.10456 1.48694 1.49458 1.65922 1.78175 1.97205 2.06065 2.36829 2.74766 3.12737 3.20454 3.32879 3.55469 3.75218 3.80492 3.80944 3.98080 4.02625 4.10539 4.18349 4.21871 4.24998 4.31133 4.36023 4.42747 4.47475 4.49679 4.54334 4.57262 4.66020 4.70299 4.77584 4.80958 4.88278 4.90942 4.95326 5.09319 5.13171 5.16302 5.26517 5.34375 5.43486 5.50934 5.56048 5.62156 5.89270 6.01104 6.34677 6.48283 6.53849 6.70899 6.79618 7.26568 7.39801 7.87857 8.49600 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.008739 B = 0.004168 C = 0.003134 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3203.360568 B = 6715.813739 C = 8933.357913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 C -0.099 4.099 4 H 0.128 0.872 5 C -0.135 4.135 6 C 0.510 3.490 7 O -0.594 6.594 8 N -0.594 5.594 9 C 0.104 3.896 10 C -0.129 4.129 11 C -0.094 4.094 12 C 0.100 3.900 13 C 0.048 3.952 14 O -0.583 6.583 15 N -0.646 5.646 16 C 0.071 3.929 17 C 0.446 3.554 18 O -0.614 6.614 19 N -0.589 5.589 20 C -0.409 4.409 21 H 0.072 0.928 22 C -0.044 4.044 23 N -0.917 5.917 24 Si 1.140 2.860 25 H -0.279 1.279 26 H -0.271 1.271 27 H -0.267 1.267 28 C 0.121 3.879 29 H 0.076 0.924 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.037 0.963 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.056 0.944 36 H 0.023 0.977 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.047 0.953 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.063 0.937 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.397 0.603 46 H 0.344 0.656 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.380 0.620 50 H 0.256 0.744 51 H 0.061 0.939 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.730 9.041 22.630 26.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.145 4.145 3 C -0.120 4.120 4 H 0.146 0.854 5 C -0.193 4.193 6 C 0.300 3.700 7 O -0.474 6.474 8 N -0.324 5.324 9 C -0.017 4.017 10 C -0.167 4.167 11 C -0.132 4.132 12 C 0.008 3.992 13 C -0.033 4.033 14 O -0.391 6.391 15 N -0.278 5.278 16 C -0.062 4.062 17 C 0.234 3.766 18 O -0.499 6.499 19 N -0.228 5.228 20 C -0.538 4.538 21 H 0.090 0.910 22 C -0.242 4.242 23 N -0.556 5.556 24 Si 0.959 3.041 25 H -0.205 1.205 26 H -0.197 1.197 27 H -0.192 1.192 28 C -0.003 4.003 29 H 0.095 0.905 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.056 0.944 33 H 0.079 0.921 34 H 0.116 0.884 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.116 0.884 38 H 0.118 0.882 39 H 0.066 0.934 40 H 0.117 0.883 41 H 0.114 0.886 42 H 0.082 0.918 43 H 0.100 0.900 44 H 0.057 0.943 45 H 0.246 0.754 46 H 0.163 0.837 47 H 0.101 0.899 48 H 0.077 0.923 49 H 0.214 0.786 50 H 0.067 0.933 51 H 0.080 0.920 52 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -10.732 8.002 20.501 24.485 hybrid contribution 2.013 0.400 1.350 2.457 sum -8.719 8.403 21.852 24.982 Atomic orbital electron populations 1.21780 0.92868 1.02517 1.03013 1.21352 0.97624 0.94060 1.01425 1.21381 0.89785 0.99416 1.01429 0.85433 1.21723 1.03205 0.99726 0.94649 1.21317 0.91594 0.81545 0.75579 1.90670 1.69037 1.38168 1.49557 1.47888 1.07491 1.17304 1.59766 1.22072 0.96090 0.82918 1.00641 1.21834 0.95524 0.98273 1.01066 1.21467 0.95162 0.95174 1.01379 1.21569 0.92789 0.97405 0.87471 1.22827 0.94108 0.88065 0.98254 1.86411 1.29306 1.46351 1.77025 1.60130 1.58582 1.05763 1.03299 1.21439 0.96912 0.97314 0.90531 1.20795 0.83240 0.82724 0.89821 1.90462 1.40823 1.43689 1.74929 1.42002 1.42945 1.29508 1.08302 1.20569 1.30399 1.18251 0.84555 0.91037 1.27936 0.93394 0.91317 1.11533 1.70905 1.35511 1.36355 1.12824 0.82553 0.77090 0.76894 0.67515 1.20474 1.19669 1.19173 1.21561 0.81130 0.96931 1.00629 0.90486 0.92113 0.92208 0.94439 0.92149 0.88384 0.92452 0.95756 0.88443 0.88219 0.93397 0.88335 0.88596 0.91788 0.90041 0.94269 0.75365 0.83694 0.89858 0.92324 0.78640 0.93282 0.92020 0.87844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.34 9.67 71.98 0.70 -1.64 16 2 C -0.11 -2.51 4.89 30.60 0.15 -2.37 16 3 C -0.10 -2.27 1.86 -11.54 -0.02 -2.30 16 4 H 0.13 1.86 6.55 -2.39 -0.02 1.85 16 5 C -0.14 -3.39 8.55 71.98 0.62 -2.78 16 6 C 0.51 15.77 6.76 87.66 0.59 16.37 16 7 O -0.59 -24.88 15.66 -3.03 -0.05 -24.93 16 8 N -0.59 -14.35 2.89 -818.89 -2.37 -16.72 16 9 C 0.10 1.60 6.07 86.36 0.52 2.13 16 10 C -0.13 -2.27 5.93 30.70 0.18 -2.08 16 11 C -0.09 -1.69 4.67 30.64 0.14 -1.55 16 12 C 0.10 2.34 0.39 3.61 0.00 2.35 16 13 C 0.05 0.94 5.33 71.98 0.38 1.32 16 14 O -0.58 -12.29 12.59 -148.98 -1.88 -14.17 16 15 N -0.65 -22.19 4.69 -473.76 -2.22 -24.42 16 16 C 0.07 2.85 5.31 85.56 0.45 3.30 16 17 C 0.45 23.94 7.83 87.66 0.69 24.63 16 18 O -0.61 -37.25 15.85 -3.05 -0.05 -37.30 16 19 N -0.59 -33.47 5.28 -307.00 -1.62 -35.09 16 20 C -0.41 -25.32 9.68 84.04 0.81 -24.51 16 21 H 0.07 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.04 -2.57 5.50 84.93 0.47 -2.10 16 23 N -0.92 -54.71 13.68 21.66 0.30 -54.41 16 24 Si 1.14 51.83 29.92 68.60 2.05 53.88 16 25 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 28 C 0.12 2.90 5.07 86.36 0.44 3.33 16 29 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.06 0.96 6.69 -2.38 -0.02 0.95 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.04 1.15 8.02 -2.39 -0.02 1.13 16 33 H 0.06 1.41 8.14 -2.39 -0.02 1.40 16 34 H 0.10 1.77 6.83 -2.39 -0.02 1.75 16 35 H 0.06 1.49 7.56 -2.38 -0.02 1.47 16 36 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.27 5.05 -2.39 -0.01 1.26 16 38 H 0.10 0.89 8.14 -2.38 -0.02 0.88 16 39 H 0.05 1.25 7.53 -2.39 -0.02 1.23 16 40 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.32 7.69 -2.39 -0.02 1.30 16 43 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.04 0.86 6.51 -2.38 -0.02 0.85 16 45 H 0.40 5.00 9.12 -74.06 -0.68 4.33 16 46 H 0.34 12.98 8.13 -89.70 -0.73 12.25 16 47 H 0.08 3.50 6.20 -2.38 -0.01 3.48 16 48 H 0.06 2.14 6.47 -2.39 -0.02 2.13 16 49 H 0.38 20.34 6.73 -92.70 -0.62 19.72 16 50 H 0.26 15.06 6.77 -92.71 -0.63 14.43 16 51 H 0.06 1.92 5.10 -2.39 -0.01 1.91 16 52 H 0.10 1.71 8.14 -2.39 -0.02 1.69 16 Total: -1.00 -87.10 400.81 -0.63 -87.73 By element: Atomic # 1 Polarization: 52.24 SS G_CDS: -0.92 Total: 51.32 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: 6.13 Total: 14.11 kcal Atomic # 7 Polarization: -124.72 SS G_CDS: -5.92 Total: -130.64 kcal Atomic # 8 Polarization: -74.42 SS G_CDS: -1.97 Total: -76.40 kcal Atomic # 14 Polarization: 51.83 SS G_CDS: 2.05 Total: 53.88 kcal Total: -87.10 -0.63 -87.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001281106173.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.555 kcal (2) G-P(sol) polarization free energy of solvation -87.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds