Wall clock time and date at job start Wed Apr 1 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46674 * 2 1 4 4 H 1.08995 * 109.47256 * 304.99977 * 3 2 1 5 5 C 1.53000 * 109.47033 * 65.00302 * 3 2 1 6 6 C 1.52997 * 109.46963 * 185.00077 * 3 2 1 7 7 C 1.50694 * 109.47321 * 175.00106 * 6 3 2 8 8 O 1.21287 * 120.00209 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00260 * 179.72429 * 7 6 3 10 10 C 1.46502 * 120.00439 * 175.25019 * 9 7 6 11 11 C 1.53004 * 112.93848 * 294.58188 * 10 9 7 12 12 C 1.53001 * 109.47107 * 303.74595 * 11 10 9 13 13 O 1.42897 * 109.47203 * 175.60737 * 12 11 10 14 14 C 1.53935 * 113.73598 * 163.01282 * 10 9 7 15 15 N 1.48301 * 86.06071 * 269.30846 * 14 10 9 16 16 C 1.46902 * 111.00230 * 222.41632 * 15 14 10 17 17 C 1.50696 * 109.47448 * 269.35458 * 16 15 14 18 18 O 1.21296 * 119.99972 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00350 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00261 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00001 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99792 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00156 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47238 * 89.99404 * 24 22 20 26 26 H 1.48501 * 109.46959 * 209.99997 * 24 22 20 27 27 H 1.48507 * 109.46763 * 329.99598 * 24 22 20 28 28 C 1.47954 * 90.75638 * 335.30842 * 15 14 10 29 29 H 1.09003 * 109.47661 * 60.00151 * 1 2 3 30 30 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47347 * 299.99874 * 1 2 3 32 32 H 1.08998 * 109.46858 * 240.00315 * 2 1 3 33 33 H 1.08996 * 109.47337 * 119.99963 * 2 1 3 34 34 H 1.09004 * 109.46777 * 299.99466 * 5 3 2 35 35 H 1.08995 * 109.47366 * 59.99742 * 5 3 2 36 36 H 1.09001 * 109.46594 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47072 * 55.00051 * 6 3 2 38 38 H 1.09009 * 109.47193 * 295.00230 * 6 3 2 39 39 H 0.97004 * 120.00080 * 355.25012 * 9 7 6 40 40 H 1.09009 * 109.46596 * 63.74046 * 11 10 9 41 41 H 1.08990 * 109.47255 * 183.73868 * 11 10 9 42 42 H 1.08997 * 109.46500 * 295.60334 * 12 11 10 43 43 H 1.08997 * 109.47128 * 55.60235 * 12 11 10 44 44 H 0.96700 * 114.00276 * 179.97438 * 13 12 11 45 45 H 1.09001 * 113.75791 * 23.68172 * 14 10 9 46 46 H 1.09005 * 113.75667 * 155.04278 * 14 10 9 47 47 H 1.08997 * 109.47156 * 29.35829 * 16 15 14 48 48 H 1.08999 * 109.46858 * 149.35426 * 16 15 14 49 49 H 0.97003 * 120.00094 * 0.02562 * 19 17 16 50 50 H 0.97001 * 120.00180 * 179.97438 * 23 22 20 51 51 H 1.09007 * 113.75856 * 270.36945 * 28 15 14 52 52 H 1.08998 * 113.75830 * 139.00506 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4445 -0.1257 7 6 4.0568 2.8634 -0.2492 8 8 3.2658 3.7828 -0.2383 9 7 5.3763 3.1113 -0.3668 10 6 5.8475 4.4802 -0.5912 11 6 5.4065 5.0488 -1.9415 12 6 5.8818 4.1241 -3.0640 13 8 5.3834 4.5996 -4.3160 14 6 7.3455 4.6762 -0.2959 15 7 6.9237 5.0211 1.0834 16 6 7.6733 6.1787 1.5893 17 6 8.9152 5.7026 2.2978 18 8 9.1528 4.5155 2.3734 19 7 9.7619 6.5956 2.8473 20 6 10.8914 6.1623 3.4923 21 1 11.1029 5.1054 3.5596 22 6 11.7646 7.0831 4.0584 23 7 12.8470 6.6678 4.6770 24 14 11.3992 8.9113 3.9412 25 1 10.5904 9.3306 5.1140 26 1 12.6751 9.6709 3.9225 27 1 10.6414 9.1856 2.6938 28 6 5.5876 5.4270 0.5944 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5488 2.1252 1.3969 35 1 2.0698 1.5875 2.1492 36 1 1.9980 3.1544 1.3071 37 1 3.8569 0.8802 -1.0114 38 1 4.0029 0.9837 0.7597 39 1 6.0142 2.3833 -0.3028 40 1 4.3192 5.1222 -1.9671 41 1 5.8408 6.0391 -2.0780 42 1 6.9714 4.1121 -3.0877 43 1 5.5110 3.1150 -2.8849 44 1 5.6465 4.0605 -5.0744 45 1 7.9298 3.7584 -0.3618 46 1 7.7949 5.5078 -0.8386 47 1 7.9547 6.8219 0.7555 48 1 7.0498 6.7390 2.2860 49 1 9.5718 7.5449 2.7871 50 1 13.4568 7.3105 5.0719 51 1 5.5241 6.4778 0.3115 52 1 4.7686 5.1087 1.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282513727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:30 Heat of formation + Delta-G solvation = -96.318435 kcal Electronic energy + Delta-G solvation = -30678.612701 eV Core-core repulsion = 26486.047850 eV Total energy + Delta-G solvation = -4192.564850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.10722 -39.29993 -38.03937 -37.04535 -36.47693 -34.30110 -33.83841 -31.93542 -31.63552 -30.72488 -29.20784 -27.76278 -26.33059 -25.49037 -24.36269 -23.72877 -21.88979 -21.06151 -19.97464 -19.46138 -19.26788 -18.34978 -17.67267 -17.21981 -16.28448 -15.95907 -15.89276 -15.43090 -15.32441 -15.15798 -14.81934 -14.69149 -14.37915 -14.22601 -14.20177 -13.51547 -13.33639 -13.17705 -13.03778 -12.76969 -12.57783 -12.42800 -12.29041 -12.13113 -12.04752 -11.93157 -11.79344 -11.59163 -11.35899 -11.24180 -11.05616 -11.02428 -10.84317 -10.79395 -10.69383 -10.60001 -10.21345 -9.98039 -9.67893 -9.56302 -9.15764 -8.82623 -8.29567 -8.17522 -6.31131 -3.82380 2.55698 2.95239 3.01823 3.06669 3.14625 3.72157 3.75260 3.90780 4.10020 4.18785 4.48735 4.50669 4.60853 4.63869 4.82248 4.86632 4.95036 5.01006 5.01939 5.15463 5.19274 5.22190 5.27922 5.31639 5.41030 5.44641 5.45133 5.48587 5.50491 5.53889 5.59337 5.69718 5.72789 5.78378 5.81206 5.82269 5.84247 5.92739 5.97306 5.98748 6.18848 6.31532 6.42457 6.50317 6.99954 7.35230 7.40934 7.58221 8.14231 8.16016 8.60645 8.95550 9.42789 9.84494 10.82088 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.002339 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.052133 B =11968.853543 C =13130.937923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.074 4.074 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.139 4.139 7 C 0.518 3.482 8 O -0.532 6.532 9 N -0.703 5.703 10 C 0.153 3.847 11 C -0.119 4.119 12 C 0.080 3.920 13 O -0.575 6.575 14 C 0.011 3.989 15 N -0.444 5.444 16 C 0.005 3.995 17 C 0.456 3.544 18 O -0.558 6.558 19 N -0.594 5.594 20 C -0.303 4.303 21 H 0.119 0.881 22 C 0.040 3.960 23 N -0.882 5.882 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C 0.006 3.994 29 H 0.053 0.947 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.060 0.940 33 H 0.062 0.938 34 H 0.052 0.948 35 H 0.047 0.953 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.405 0.595 40 H 0.087 0.913 41 H 0.079 0.921 42 H 0.046 0.954 43 H 0.044 0.956 44 H 0.378 0.622 45 H 0.097 0.903 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.090 0.910 49 H 0.370 0.630 50 H 0.273 0.727 51 H 0.075 0.925 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.473 -7.936 -15.435 26.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.093 4.093 4 H 0.095 0.905 5 C -0.212 4.212 6 C -0.179 4.179 7 C 0.305 3.695 8 O -0.409 6.409 9 N -0.355 5.355 10 C 0.065 3.935 11 C -0.158 4.158 12 C 0.003 3.997 13 O -0.380 6.380 14 C -0.118 4.118 15 N -0.166 5.166 16 C -0.127 4.127 17 C 0.241 3.759 18 O -0.439 6.439 19 N -0.234 5.234 20 C -0.432 4.432 21 H 0.137 0.863 22 C -0.162 4.162 23 N -0.523 5.523 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.124 4.124 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.076 0.924 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.113 0.887 39 H 0.241 0.759 40 H 0.105 0.895 41 H 0.097 0.903 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.224 0.776 45 H 0.115 0.885 46 H 0.100 0.900 47 H 0.078 0.922 48 H 0.108 0.892 49 H 0.202 0.798 50 H 0.084 0.916 51 H 0.093 0.907 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -20.862 -8.056 -14.313 26.552 hybrid contribution 0.658 1.441 -0.762 1.758 sum -20.204 -6.615 -15.075 26.061 Atomic orbital electron populations 1.21805 0.95776 1.01382 1.02089 1.21599 0.96155 0.96190 1.01887 1.20898 0.92616 0.95887 0.99900 0.90503 1.21996 1.01046 1.02265 0.95859 1.21785 0.97888 0.93959 1.04247 1.20661 0.81802 0.91675 0.75363 1.90657 1.54687 1.46468 1.49090 1.45639 1.07486 1.08490 1.73846 1.21603 0.94851 0.83495 0.93581 1.21763 1.03751 0.98986 0.91331 1.22086 0.97157 0.96838 0.83656 1.86479 1.77973 1.56815 1.16773 1.24418 0.93993 1.03091 0.90347 1.68510 1.01281 1.28919 1.17893 1.22536 0.96594 0.93373 1.00176 1.19571 0.85041 0.86972 0.84295 1.90552 1.75474 1.16086 1.61779 1.42229 1.22440 1.07133 1.51583 1.19412 0.96895 0.96822 1.30088 0.86340 1.25037 0.95716 0.98467 0.97020 1.69620 1.11829 1.34846 1.35960 0.86673 0.78734 0.85338 0.78633 1.19617 1.20199 1.19577 1.24311 0.94540 0.97965 0.95563 0.92797 0.92953 0.92353 0.92136 0.91898 0.92858 0.93339 0.90633 0.89130 0.88736 0.75938 0.89486 0.90288 0.93536 0.93734 0.77565 0.88503 0.89986 0.92212 0.89200 0.79790 0.91645 0.90655 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.67 37.16 0.36 -0.64 16 2 C -0.12 -0.81 5.40 -26.73 -0.14 -0.95 16 3 C -0.07 -0.61 2.04 -90.62 -0.18 -0.80 16 4 H 0.08 0.74 7.95 -51.93 -0.41 0.32 16 5 C -0.15 -1.47 8.69 37.16 0.32 -1.14 16 6 C -0.14 -1.07 5.18 -27.89 -0.14 -1.22 16 7 C 0.52 5.48 7.11 -10.99 -0.08 5.40 16 8 O -0.53 -7.19 11.94 5.55 0.07 -7.12 16 9 N -0.70 -7.01 4.49 -48.70 -0.22 -7.23 16 10 C 0.15 1.69 0.61 -133.52 -0.08 1.61 16 11 C -0.12 -1.27 4.88 -26.73 -0.13 -1.40 16 12 C 0.08 0.73 6.86 37.16 0.25 0.99 16 13 O -0.58 -5.58 13.66 -35.23 -0.48 -6.06 16 14 C 0.01 0.14 7.12 -2.57 -0.02 0.12 16 15 N -0.44 -6.87 5.66 -239.26 -1.35 -8.23 16 16 C 0.01 0.09 5.28 -4.98 -0.03 0.06 16 17 C 0.46 10.35 7.83 -10.99 -0.09 10.27 16 18 O -0.56 -14.95 16.01 5.54 0.09 -14.86 16 19 N -0.59 -14.17 5.09 -10.97 -0.06 -14.23 16 20 C -0.30 -8.59 10.16 -14.93 -0.15 -8.74 16 21 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.11 5.50 -17.47 -0.10 1.01 16 23 N -0.88 -25.81 13.96 55.50 0.77 -25.03 16 24 Si 0.88 19.43 27.74 -169.99 -4.71 14.72 16 25 H -0.27 -5.89 7.11 56.52 0.40 -5.48 16 26 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.27 -5.43 6.52 56.52 0.37 -5.06 16 28 C 0.01 0.08 6.82 -2.76 -0.02 0.06 16 29 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.46 6.57 -51.93 -0.34 0.12 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.90 5.95 -51.93 -0.31 0.59 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 38 H 0.09 0.67 8.14 -51.92 -0.42 0.25 16 39 H 0.41 3.41 8.67 -40.82 -0.35 3.06 16 40 H 0.09 1.10 7.12 -51.92 -0.37 0.73 16 41 H 0.08 0.82 8.11 -51.93 -0.42 0.40 16 42 H 0.05 0.38 8.08 -51.93 -0.42 -0.04 16 43 H 0.04 0.38 7.55 -51.93 -0.39 -0.01 16 44 H 0.38 1.90 9.12 45.56 0.42 2.32 16 45 H 0.10 1.26 8.09 -51.93 -0.42 0.84 16 46 H 0.08 0.96 7.41 -51.93 -0.39 0.57 16 47 H 0.06 0.85 7.38 -51.93 -0.38 0.46 16 48 H 0.09 1.35 8.08 -51.93 -0.42 0.93 16 49 H 0.37 7.76 5.76 -40.82 -0.24 7.52 16 50 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.08 0.86 7.88 -51.93 -0.41 0.46 16 52 H 0.10 1.40 7.34 -51.93 -0.38 1.01 16 LS Contribution 412.71 15.07 6.22 6.22 Total: -1.00 -35.55 412.71 -7.99 -43.54 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -8.09 Total: 13.64 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: -0.22 Total: 4.63 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.85 Total: -54.72 kcal Atomic # 8 Polarization: -27.71 SS G_CDS: -0.33 Total: -28.03 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -4.71 Total: 14.72 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.55 -7.99 -43.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282513727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.778 kcal (2) G-P(sol) polarization free energy of solvation -35.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds