Wall clock time and date at job start Wed Apr 1 2020 00:32:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46674 * 2 1 4 4 H 1.08995 * 109.47256 * 304.99977 * 3 2 1 5 5 C 1.53000 * 109.47033 * 65.00302 * 3 2 1 6 6 C 1.52997 * 109.46963 * 185.00077 * 3 2 1 7 7 C 1.50694 * 109.47321 * 175.00106 * 6 3 2 8 8 O 1.21287 * 120.00209 * 359.97438 * 7 6 3 9 9 N 1.34774 * 120.00260 * 179.72429 * 7 6 3 10 10 C 1.46502 * 120.00439 * 175.25019 * 9 7 6 11 11 C 1.53004 * 112.93848 * 294.58188 * 10 9 7 12 12 C 1.53001 * 109.47107 * 303.74595 * 11 10 9 13 13 O 1.42897 * 109.47203 * 175.60737 * 12 11 10 14 14 C 1.53935 * 113.73598 * 163.01282 * 10 9 7 15 15 N 1.48301 * 86.06071 * 269.30846 * 14 10 9 16 16 C 1.46902 * 111.00230 * 222.41632 * 15 14 10 17 17 C 1.50696 * 109.47448 * 269.35458 * 16 15 14 18 18 O 1.21296 * 119.99972 * 0.02562 * 17 16 15 19 19 N 1.34774 * 120.00350 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00261 * 179.97438 * 19 17 16 21 21 H 1.07996 * 119.99961 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00001 * 179.97438 * 20 19 17 23 23 N 1.31409 * 119.99792 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00156 * 0.02562 * 22 20 19 25 25 H 1.48499 * 109.47238 * 89.99404 * 24 22 20 26 26 H 1.48501 * 109.46959 * 209.99997 * 24 22 20 27 27 H 1.48507 * 109.46763 * 329.99598 * 24 22 20 28 28 C 1.47954 * 90.75638 * 335.30842 * 15 14 10 29 29 H 1.09003 * 109.47661 * 60.00151 * 1 2 3 30 30 H 1.09002 * 109.47005 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47347 * 299.99874 * 1 2 3 32 32 H 1.08998 * 109.46858 * 240.00315 * 2 1 3 33 33 H 1.08996 * 109.47337 * 119.99963 * 2 1 3 34 34 H 1.09004 * 109.46777 * 299.99466 * 5 3 2 35 35 H 1.08995 * 109.47366 * 59.99742 * 5 3 2 36 36 H 1.09001 * 109.46594 * 180.02562 * 5 3 2 37 37 H 1.09004 * 109.47072 * 55.00051 * 6 3 2 38 38 H 1.09009 * 109.47193 * 295.00230 * 6 3 2 39 39 H 0.97004 * 120.00080 * 355.25012 * 9 7 6 40 40 H 1.09009 * 109.46596 * 63.74046 * 11 10 9 41 41 H 1.08990 * 109.47255 * 183.73868 * 11 10 9 42 42 H 1.08997 * 109.46500 * 295.60334 * 12 11 10 43 43 H 1.08997 * 109.47128 * 55.60235 * 12 11 10 44 44 H 0.96700 * 114.00276 * 179.97438 * 13 12 11 45 45 H 1.09001 * 113.75791 * 23.68172 * 14 10 9 46 46 H 1.09005 * 113.75667 * 155.04278 * 14 10 9 47 47 H 1.08997 * 109.47156 * 29.35829 * 16 15 14 48 48 H 1.08999 * 109.46858 * 149.35426 * 16 15 14 49 49 H 0.97003 * 120.00094 * 0.02562 * 19 17 16 50 50 H 0.97001 * 120.00180 * 179.97438 * 23 22 20 51 51 H 1.09007 * 113.75856 * 270.36945 * 28 15 14 52 52 H 1.08998 * 113.75830 * 139.00506 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 1.6351 2.1265 1.3074 6 6 3.5647 1.4445 -0.1257 7 6 4.0568 2.8634 -0.2492 8 8 3.2658 3.7828 -0.2383 9 7 5.3763 3.1113 -0.3668 10 6 5.8475 4.4802 -0.5912 11 6 5.4065 5.0488 -1.9415 12 6 5.8818 4.1241 -3.0640 13 8 5.3834 4.5996 -4.3160 14 6 7.3455 4.6762 -0.2959 15 7 6.9237 5.0211 1.0834 16 6 7.6733 6.1787 1.5893 17 6 8.9152 5.7026 2.2978 18 8 9.1528 4.5155 2.3734 19 7 9.7619 6.5956 2.8473 20 6 10.8914 6.1623 3.4923 21 1 11.1029 5.1054 3.5596 22 6 11.7646 7.0831 4.0584 23 7 12.8470 6.6678 4.6770 24 14 11.3992 8.9113 3.9412 25 1 10.5904 9.3306 5.1140 26 1 12.6751 9.6709 3.9225 27 1 10.6414 9.1856 2.6938 28 6 5.5876 5.4270 0.5944 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.5488 2.1252 1.3969 35 1 2.0698 1.5875 2.1492 36 1 1.9980 3.1544 1.3071 37 1 3.8569 0.8802 -1.0114 38 1 4.0029 0.9837 0.7597 39 1 6.0142 2.3833 -0.3028 40 1 4.3192 5.1222 -1.9671 41 1 5.8408 6.0391 -2.0780 42 1 6.9714 4.1121 -3.0877 43 1 5.5110 3.1150 -2.8849 44 1 5.6465 4.0605 -5.0744 45 1 7.9298 3.7584 -0.3618 46 1 7.7949 5.5078 -0.8386 47 1 7.9547 6.8219 0.7555 48 1 7.0498 6.7390 2.2860 49 1 9.5718 7.5449 2.7871 50 1 13.4568 7.3105 5.0719 51 1 5.5241 6.4778 0.3115 52 1 4.7686 5.1087 1.2393 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282513727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:30 Heat of formation + Delta-G solvation = -127.082758 kcal Electronic energy + Delta-G solvation = -30679.946742 eV Core-core repulsion = 26486.047850 eV Total energy + Delta-G solvation = -4193.898892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.08179 -40.41635 -39.61947 -37.80601 -37.17471 -35.99663 -35.12560 -33.74343 -32.75974 -31.34627 -30.43217 -28.53971 -27.33451 -27.08186 -25.30301 -24.75435 -22.89039 -21.90815 -21.24526 -20.65821 -20.34345 -20.10154 -18.44917 -18.05341 -17.74252 -17.13609 -16.90288 -16.66548 -16.44222 -16.20055 -15.93065 -15.68802 -15.26884 -15.21243 -15.09267 -14.90474 -14.59014 -14.51186 -14.27247 -14.04082 -13.72910 -13.48591 -13.33123 -13.08045 -12.99260 -12.83557 -12.77528 -12.65080 -12.42793 -12.28957 -12.20757 -12.12097 -11.98052 -11.72773 -11.61433 -11.50673 -11.50221 -11.37623 -10.90526 -10.55697 -10.44135 -10.24022 -10.05347 -9.63708 -8.41248 -6.01653 1.29271 1.34996 1.43437 1.74359 1.96588 2.15550 2.22403 2.58352 3.03864 3.13877 3.19538 3.31138 3.78791 3.87160 3.89896 4.02178 4.06123 4.10563 4.23203 4.24505 4.33516 4.35480 4.41115 4.44529 4.47370 4.53839 4.65030 4.66899 4.71105 4.75520 4.77123 4.80938 4.86034 4.94321 4.95643 5.12287 5.16362 5.20276 5.25735 5.32331 5.34212 5.52934 5.53079 5.59062 5.66139 5.86988 5.98433 6.59950 6.62689 6.88478 6.88904 7.35939 7.40523 7.97969 8.76359 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.014116 B = 0.002339 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1983.052133 B =11968.853543 C =13130.937923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.116 4.116 3 C -0.071 4.071 4 H 0.062 0.938 5 C -0.152 4.152 6 C -0.134 4.134 7 C 0.514 3.486 8 O -0.564 6.564 9 N -0.700 5.700 10 C 0.166 3.834 11 C -0.112 4.112 12 C 0.083 3.917 13 O -0.594 6.594 14 C 0.011 3.989 15 N -0.476 5.476 16 C 0.017 3.983 17 C 0.455 3.545 18 O -0.606 6.606 19 N -0.594 5.594 20 C -0.325 4.325 21 H 0.056 0.944 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.231 1.231 28 C 0.010 3.990 29 H 0.050 0.950 30 H 0.061 0.939 31 H 0.052 0.948 32 H 0.073 0.927 33 H 0.067 0.933 34 H 0.056 0.944 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.116 0.884 38 H 0.104 0.896 39 H 0.413 0.587 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.058 0.942 43 H 0.050 0.950 44 H 0.397 0.603 45 H 0.089 0.911 46 H 0.098 0.902 47 H 0.095 0.905 48 H 0.111 0.889 49 H 0.388 0.612 50 H 0.279 0.721 51 H 0.095 0.905 52 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.847 -6.505 -17.231 28.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.090 4.090 4 H 0.080 0.920 5 C -0.209 4.209 6 C -0.174 4.174 7 C 0.302 3.698 8 O -0.443 6.443 9 N -0.352 5.352 10 C 0.078 3.922 11 C -0.151 4.151 12 C 0.005 3.995 13 O -0.403 6.403 14 C -0.117 4.117 15 N -0.199 5.199 16 C -0.115 4.115 17 C 0.243 3.757 18 O -0.490 6.490 19 N -0.237 5.237 20 C -0.455 4.455 21 H 0.074 0.926 22 C -0.215 4.215 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.184 1.184 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.120 4.120 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.067 0.933 37 H 0.134 0.866 38 H 0.122 0.878 39 H 0.250 0.750 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.076 0.924 43 H 0.068 0.932 44 H 0.247 0.753 45 H 0.107 0.893 46 H 0.116 0.884 47 H 0.113 0.887 48 H 0.129 0.871 49 H 0.224 0.776 50 H 0.088 0.912 51 H 0.113 0.887 52 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -22.250 -6.648 -16.143 28.281 hybrid contribution 1.076 0.847 -0.197 1.384 sum -21.174 -5.801 -16.340 27.367 Atomic orbital electron populations 1.21817 0.95764 1.01897 1.01717 1.21566 0.96157 0.94922 1.02712 1.20854 0.93011 0.96694 0.98429 0.91970 1.21948 1.01244 1.00836 0.96868 1.21824 0.97378 0.92318 1.05870 1.21171 0.81553 0.92537 0.74501 1.90651 1.55441 1.47674 1.50511 1.45656 1.07661 1.08417 1.73491 1.21410 0.93654 0.83744 0.93391 1.21665 1.02290 0.99694 0.91499 1.22046 0.97732 0.96546 0.83159 1.86424 1.78385 1.57844 1.17651 1.24475 0.94837 1.03347 0.89088 1.68450 1.02515 1.29058 1.19854 1.22476 0.93646 0.94202 1.01163 1.20806 0.85992 0.86188 0.82740 1.90528 1.76833 1.18469 1.63121 1.42066 1.21510 1.08336 1.51753 1.18985 0.99516 0.94519 1.32454 0.92633 1.26101 0.94744 1.05026 0.95605 1.69800 1.13288 1.37459 1.36991 0.85382 0.79207 0.76403 0.80636 1.18404 1.19985 1.15435 1.24305 0.92456 0.99485 0.95704 0.93043 0.91982 0.92904 0.90861 0.91454 0.92505 0.93062 0.93264 0.86573 0.87767 0.74999 0.91610 0.89743 0.92365 0.93166 0.75319 0.89301 0.88393 0.88726 0.87052 0.77627 0.91192 0.88730 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.82 9.67 71.98 0.70 -1.12 16 2 C -0.12 -1.35 5.40 30.60 0.17 -1.18 16 3 C -0.07 -1.11 2.04 -10.79 -0.02 -1.13 16 4 H 0.06 1.17 7.95 -2.39 -0.02 1.15 16 5 C -0.15 -2.87 8.69 71.98 0.63 -2.25 16 6 C -0.13 -1.88 5.18 29.85 0.15 -1.72 16 7 C 0.51 10.49 7.11 87.66 0.62 11.12 16 8 O -0.56 -15.25 11.94 -3.05 -0.04 -15.29 16 9 N -0.70 -13.21 4.49 -426.36 -1.91 -15.12 16 10 C 0.17 3.44 0.61 5.17 0.00 3.45 16 11 C -0.11 -2.19 4.88 30.60 0.15 -2.04 16 12 C 0.08 1.34 6.86 71.98 0.49 1.83 16 13 O -0.59 -10.31 13.66 -148.98 -2.03 -12.35 16 14 C 0.01 0.27 7.12 86.34 0.61 0.88 16 15 N -0.48 -14.03 5.66 -910.88 -5.15 -19.19 16 16 C 0.02 0.52 5.28 85.56 0.45 0.97 16 17 C 0.46 20.50 7.83 87.66 0.69 21.19 16 18 O -0.61 -33.41 16.01 -3.08 -0.05 -33.46 16 19 N -0.59 -28.02 5.09 -306.99 -1.56 -29.58 16 20 C -0.33 -19.06 10.16 84.04 0.85 -18.20 16 21 H 0.06 3.87 7.39 -2.91 -0.02 3.85 16 22 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 23 N -0.93 -56.37 13.96 21.66 0.30 -56.07 16 24 Si 0.96 38.87 27.74 68.60 1.90 40.77 16 25 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 26 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 27 H -0.23 -7.80 6.52 99.48 0.65 -7.15 16 28 C 0.01 0.24 6.82 86.41 0.59 0.83 16 29 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.05 0.67 6.56 -2.39 -0.02 0.65 16 32 H 0.07 0.68 8.14 -2.39 -0.02 0.67 16 33 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 1.00 6.57 -2.38 -0.02 0.98 16 35 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.05 1.20 5.95 -2.39 -0.01 1.19 16 37 H 0.12 1.04 8.14 -2.39 -0.02 1.03 16 38 H 0.10 1.29 8.14 -2.38 -0.02 1.28 16 39 H 0.41 6.45 8.67 -92.71 -0.80 5.65 16 40 H 0.07 1.60 7.12 -2.38 -0.02 1.59 16 41 H 0.08 1.54 8.11 -2.39 -0.02 1.52 16 42 H 0.06 0.81 8.08 -2.39 -0.02 0.79 16 43 H 0.05 0.74 7.55 -2.39 -0.02 0.73 16 44 H 0.40 3.13 9.12 -74.06 -0.68 2.45 16 45 H 0.09 2.23 8.09 -2.39 -0.02 2.22 16 46 H 0.10 1.99 7.41 -2.38 -0.02 1.98 16 47 H 0.09 2.28 7.38 -2.39 -0.02 2.26 16 48 H 0.11 2.96 8.08 -2.39 -0.02 2.94 16 49 H 0.39 15.18 5.76 -92.71 -0.53 14.64 16 50 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 51 H 0.09 1.91 7.88 -2.38 -0.02 1.89 16 52 H 0.08 2.24 7.34 -2.39 -0.02 2.22 16 Total: -1.00 -82.68 412.71 -3.12 -85.80 By element: Atomic # 1 Polarization: 43.44 SS G_CDS: -1.13 Total: 42.31 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 6.55 Total: 12.18 kcal Atomic # 7 Polarization: -111.63 SS G_CDS: -8.33 Total: -119.96 kcal Atomic # 8 Polarization: -58.97 SS G_CDS: -2.12 Total: -61.10 kcal Atomic # 14 Polarization: 38.87 SS G_CDS: 1.90 Total: 40.77 kcal Total: -82.68 -3.12 -85.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282513727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.284 kcal (2) G-P(sol) polarization free energy of solvation -82.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds