Wall clock time and date at job start Wed Apr 1 2020 01:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00056 * 2 1 4 4 H 1.09000 * 109.47102 * 29.99771 * 3 2 1 5 5 C 1.50695 * 109.46619 * 269.99590 * 3 2 1 6 6 O 1.21281 * 120.00668 * 354.99955 * 5 3 2 7 7 N 1.34783 * 119.99893 * 175.00196 * 5 3 2 8 8 C 1.46500 * 119.99824 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.46719 * 180.02562 * 8 7 5 10 10 H 1.09006 * 112.85005 * 316.18928 * 9 8 7 11 11 C 1.53952 * 113.67069 * 87.43502 * 9 8 7 12 12 C 1.53782 * 87.01799 * 139.93192 * 11 9 8 13 13 H 1.09002 * 113.61739 * 89.23487 * 12 11 9 14 14 N 1.46901 * 113.61479 * 220.05104 * 12 11 9 15 15 C 1.46902 * 110.99844 * 254.13607 * 14 12 11 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48504 * 109.47034 * 59.99919 * 23 21 19 25 25 H 1.48504 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 299.99991 * 23 21 19 27 27 C 1.53778 * 87.17469 * 334.63875 * 12 11 9 28 28 C 1.53004 * 109.46991 * 149.99927 * 3 2 1 29 29 C 1.52997 * 109.46891 * 299.99398 * 28 3 2 30 30 C 1.52999 * 109.47133 * 59.99675 * 28 3 2 31 31 H 1.08998 * 109.46908 * 59.99983 * 1 2 3 32 32 H 1.08993 * 109.47173 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46813 * 300.00500 * 1 2 3 34 34 H 0.96996 * 119.99439 * 359.97438 * 7 5 3 35 35 H 1.08991 * 109.47605 * 59.99984 * 8 7 5 36 36 H 1.09002 * 109.46812 * 299.99529 * 8 7 5 37 37 H 1.09002 * 113.61428 * 25.41618 * 11 9 8 38 38 H 1.08994 * 113.67326 * 254.46065 * 11 9 8 39 39 H 1.00895 * 111.00207 * 18.08950 * 14 12 11 40 40 H 1.09004 * 109.47131 * 60.00016 * 15 14 12 41 41 H 1.08994 * 109.47471 * 299.99766 * 15 14 12 42 42 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 43 43 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.61029 * 139.93637 * 27 12 11 45 45 H 1.09002 * 113.61601 * 270.75689 * 27 12 11 46 46 H 1.09005 * 109.46769 * 179.97438 * 28 3 2 47 47 H 1.08998 * 109.47367 * 60.00515 * 29 28 3 48 48 H 1.09002 * 109.47014 * 180.02562 * 29 28 3 49 49 H 1.09000 * 109.47611 * 300.00407 * 29 28 3 50 50 H 1.09000 * 109.47159 * 60.00264 * 30 28 3 51 51 H 1.09002 * 109.46836 * 179.97438 * 30 28 3 52 52 H 1.08998 * 109.47189 * 299.99524 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2147 1.7642 -1.4208 6 8 1.9793 1.0104 -2.3413 7 7 2.6591 3.0123 -1.6687 8 6 2.8572 3.4584 -3.0500 9 6 3.3633 4.9023 -3.0518 10 1 2.8281 5.5394 -2.3476 11 6 4.8949 5.0205 -2.9493 12 6 4.7952 6.1607 -3.9764 13 1 4.6530 7.1431 -3.5259 14 7 5.8672 6.1436 -4.9806 15 6 6.8462 7.2083 -4.7237 16 6 7.9285 7.1589 -5.7713 17 8 7.8880 6.3197 -6.6461 18 7 8.9415 8.0473 -5.7361 19 6 9.9257 8.0027 -6.6893 20 1 9.8893 7.2559 -7.4688 21 6 10.9670 8.9222 -6.6564 22 7 11.0111 9.8312 -5.7084 23 14 12.3040 8.8664 -7.9598 24 1 11.6963 9.0603 -9.3009 25 1 13.2915 9.9452 -7.7025 26 1 12.9873 7.5488 -7.9118 27 6 3.4885 5.5094 -4.4592 28 6 3.3590 1.2632 0.7213 29 6 3.1514 0.7975 2.1638 30 6 4.2927 0.2891 0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.8469 3.6153 -0.9325 35 1 1.9113 3.4040 -3.5887 36 1 3.5906 2.8161 -3.5375 37 1 5.4263 4.1441 -3.3202 38 1 5.2441 5.3451 -1.9692 39 1 6.3158 5.2405 -5.0152 40 1 7.2885 7.0650 -3.7378 41 1 6.3479 8.1769 -4.7611 42 1 8.9737 8.7187 -5.0367 43 1 11.7381 10.4728 -5.6852 44 1 2.7040 6.2281 -4.6961 45 1 3.6345 4.7678 -5.2446 46 1 3.8025 2.2590 0.7209 47 1 2.7081 -0.1983 2.1639 48 1 4.1122 0.7678 2.6778 49 1 2.4862 1.4914 2.6776 50 1 4.4406 0.6210 -1.0276 51 1 5.2537 0.2594 0.5137 52 1 3.8494 -0.7066 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316620152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:24 Heat of formation + Delta-G solvation = -110.060208 kcal Electronic energy + Delta-G solvation = -29400.497073 eV Core-core repulsion = 25207.336335 eV Total energy + Delta-G solvation = -4193.160738 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.65317 -39.53443 -38.13411 -37.77764 -35.48126 -34.92825 -34.01901 -33.14644 -31.20194 -29.30929 -27.75654 -27.50926 -26.61177 -25.82103 -25.66486 -24.00354 -21.80405 -21.52651 -20.47695 -19.81973 -19.07082 -17.89986 -17.83384 -17.26610 -16.52025 -16.07861 -15.86541 -15.58941 -15.32646 -15.14198 -14.75306 -14.50911 -14.45518 -14.28022 -13.97331 -13.83666 -13.77930 -13.32814 -13.04625 -12.84187 -12.56093 -12.53622 -12.43796 -12.35999 -12.07917 -11.79959 -11.57015 -11.55071 -11.51983 -11.27577 -11.17195 -11.09370 -11.01011 -10.89191 -10.63758 -10.49019 -10.43701 -10.20591 -9.56699 -9.49842 -9.34903 -8.44355 -8.01311 -7.94629 -6.41555 -3.82322 2.28669 2.72051 3.20542 3.26031 3.30713 3.34261 3.91218 4.09536 4.19503 4.24389 4.29231 4.36834 4.37876 4.50239 4.62866 4.69913 4.81973 4.85962 4.94906 4.98461 5.01288 5.14780 5.18738 5.25818 5.27914 5.30901 5.32912 5.43320 5.45128 5.54179 5.60570 5.64073 5.66553 5.69470 5.79940 5.85840 5.86891 5.97534 6.01086 6.03440 6.14478 6.21430 6.33393 6.56033 7.16384 7.27800 7.55270 7.67342 7.91404 8.06498 8.61634 9.18100 9.54512 10.06197 10.76102 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.001585 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.518271 B =17662.651445 C =18203.452641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.352 6.352 3 C 0.077 3.923 4 H 0.084 0.916 5 C 0.489 3.511 6 O -0.524 6.524 7 N -0.727 5.727 8 C 0.131 3.869 9 C -0.124 4.124 10 H 0.094 0.906 11 C -0.165 4.165 12 C 0.069 3.931 13 H 0.096 0.904 14 N -0.658 5.658 15 C 0.051 3.949 16 C 0.439 3.561 17 O -0.584 6.584 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.117 4.117 28 C -0.086 4.086 29 C -0.145 4.145 30 C -0.147 4.147 31 H 0.044 0.956 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.399 0.601 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.352 0.648 40 H 0.043 0.957 41 H 0.085 0.915 42 H 0.392 0.608 43 H 0.272 0.728 44 H 0.070 0.930 45 H 0.090 0.910 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.060 0.940 49 H 0.053 0.947 50 H 0.054 0.946 51 H 0.058 0.942 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.471 -12.133 19.272 30.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.269 6.269 3 C 0.015 3.985 4 H 0.102 0.898 5 C 0.274 3.726 6 O -0.399 6.399 7 N -0.381 5.381 8 C 0.008 3.992 9 C -0.144 4.144 10 H 0.113 0.887 11 C -0.205 4.205 12 C -0.042 4.042 13 H 0.114 0.886 14 N -0.289 5.289 15 C -0.082 4.082 16 C 0.225 3.775 17 O -0.468 6.468 18 N -0.200 5.200 19 C -0.430 4.430 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.156 4.156 28 C -0.105 4.105 29 C -0.202 4.202 30 C -0.204 4.204 31 H 0.063 0.937 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.233 0.767 35 H 0.086 0.914 36 H 0.089 0.911 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.172 0.828 40 H 0.061 0.939 41 H 0.103 0.897 42 H 0.225 0.775 43 H 0.082 0.918 44 H 0.089 0.911 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.085 0.915 48 H 0.079 0.921 49 H 0.072 0.928 50 H 0.073 0.927 51 H 0.077 0.923 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.747 -12.914 17.549 30.086 hybrid contribution 1.047 0.783 0.924 1.601 sum -19.700 -12.130 18.473 29.605 Atomic orbital electron populations 1.22868 0.80711 1.03294 0.99915 1.87993 1.19868 1.24698 1.94315 1.22153 0.97145 0.86968 0.92199 0.89817 1.21364 0.77233 0.81746 0.92249 1.90732 1.49605 1.53509 1.46040 1.46091 1.68205 1.14442 1.09361 1.21395 1.01306 0.94225 0.82312 1.22693 0.96714 0.95106 0.99837 0.88749 1.23882 0.95433 1.00434 1.00714 1.22989 0.92872 0.97533 0.90842 0.88606 1.60005 1.13047 1.08289 1.47532 1.21705 0.93351 0.96315 0.96836 1.19854 0.84256 0.85048 0.88352 1.90525 1.77968 1.39358 1.38919 1.41860 1.21152 1.29363 1.27661 1.19665 1.00871 1.15221 1.07226 0.87976 1.25260 0.98931 0.95626 0.98090 1.69602 1.33623 1.18130 1.33015 0.85915 0.79891 0.77833 0.80557 1.19877 1.20981 1.19927 1.23050 0.97408 0.99920 0.95173 1.21224 0.92569 1.00925 0.95780 1.21787 1.01998 1.02205 0.94217 1.21787 0.98592 1.00059 0.99964 0.93735 0.89172 0.94001 0.76712 0.91394 0.91112 0.89589 0.91522 0.82776 0.93893 0.89666 0.77478 0.91842 0.91081 0.89131 0.89691 0.91528 0.92066 0.92772 0.92692 0.92290 0.91422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.81 101.05 1.09 1.29 16 2 O -0.35 -3.26 8.54 -55.09 -0.47 -3.73 16 3 C 0.08 0.57 2.26 -27.88 -0.06 0.51 16 4 H 0.08 0.42 7.79 -51.93 -0.40 0.01 16 5 C 0.49 4.85 5.87 -10.99 -0.06 4.79 16 6 O -0.52 -7.59 16.51 -14.30 -0.24 -7.82 16 7 N -0.73 -5.47 5.52 -60.30 -0.33 -5.81 16 8 C 0.13 1.14 5.52 -4.04 -0.02 1.12 16 9 C -0.12 -0.95 3.75 -89.72 -0.34 -1.29 16 10 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 11 C -0.17 -1.51 7.27 -25.83 -0.19 -1.69 16 12 C 0.07 0.77 4.16 -66.90 -0.28 0.49 16 13 H 0.10 1.00 7.88 -51.93 -0.41 0.59 16 14 N -0.66 -10.35 6.24 -107.13 -0.67 -11.02 16 15 C 0.05 0.88 6.02 -4.97 -0.03 0.85 16 16 C 0.44 10.39 7.82 -10.98 -0.09 10.31 16 17 O -0.58 -15.98 15.78 5.55 0.09 -15.89 16 18 N -0.56 -14.31 5.29 -10.96 -0.06 -14.36 16 19 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.60 5.50 -17.46 -0.10 0.51 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.78 16 23 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.12 -1.14 7.44 -25.92 -0.19 -1.34 16 28 C -0.09 -0.54 2.77 -90.62 -0.25 -0.79 16 29 C -0.14 -0.75 9.05 37.16 0.34 -0.42 16 30 C -0.15 -1.20 8.80 37.16 0.33 -0.88 16 31 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 33 H 0.04 0.19 8.08 -51.93 -0.42 -0.23 16 34 H 0.40 1.90 8.26 -40.82 -0.34 1.56 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.75 7.85 -51.93 -0.41 0.34 16 37 H 0.09 0.88 7.59 -51.93 -0.39 0.48 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.35 5.79 7.91 -39.29 -0.31 5.48 16 40 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.36 8.13 -51.93 -0.42 0.94 16 42 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 43 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 44 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 45 H 0.09 1.00 8.10 -51.93 -0.42 0.58 16 46 H 0.08 0.40 7.92 -51.93 -0.41 -0.01 16 47 H 0.07 0.41 7.68 -51.93 -0.40 0.01 16 48 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 49 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.05 0.55 7.22 -51.93 -0.37 0.17 16 51 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 52 H 0.07 0.63 7.68 -51.93 -0.40 0.23 16 LS Contribution 425.38 15.07 6.41 6.41 Total: -1.00 -34.46 425.38 -8.73 -43.19 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: -9.17 Total: 11.81 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: 0.00 Total: 4.90 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.33 Total: -54.97 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.62 Total: -27.44 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.41 Total: 6.41 kcal Total: -34.46 -8.73 -43.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316620152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.868 kcal (2) G-P(sol) polarization free energy of solvation -34.457 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds