Wall clock time and date at job start Wed Apr 1 2020 01:04:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42904 * 114.00056 * 2 1 4 4 H 1.09000 * 109.47102 * 29.99771 * 3 2 1 5 5 C 1.50695 * 109.46619 * 269.99590 * 3 2 1 6 6 O 1.21281 * 120.00668 * 354.99955 * 5 3 2 7 7 N 1.34783 * 119.99893 * 175.00196 * 5 3 2 8 8 C 1.46500 * 119.99824 * 180.02562 * 7 5 3 9 9 C 1.53001 * 109.46719 * 180.02562 * 8 7 5 10 10 H 1.09006 * 112.85005 * 316.18928 * 9 8 7 11 11 C 1.53952 * 113.67069 * 87.43502 * 9 8 7 12 12 C 1.53782 * 87.01799 * 139.93192 * 11 9 8 13 13 H 1.09002 * 113.61739 * 89.23487 * 12 11 9 14 14 N 1.46901 * 113.61479 * 220.05104 * 12 11 9 15 15 C 1.46902 * 110.99844 * 254.13607 * 14 12 11 16 16 C 1.50702 * 109.47027 * 179.97438 * 15 14 12 17 17 O 1.21293 * 120.00255 * 0.02562 * 16 15 14 18 18 N 1.34783 * 120.00004 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99804 * 180.02562 * 18 16 15 20 20 H 1.08002 * 120.00499 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99671 * 179.72159 * 19 18 16 22 22 N 1.31414 * 120.00152 * 0.27554 * 21 19 18 23 23 Si 1.86803 * 119.99914 * 180.27723 * 21 19 18 24 24 H 1.48504 * 109.47034 * 59.99919 * 23 21 19 25 25 H 1.48504 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48501 * 109.46993 * 299.99991 * 23 21 19 27 27 C 1.53778 * 87.17469 * 334.63875 * 12 11 9 28 28 C 1.53004 * 109.46991 * 149.99927 * 3 2 1 29 29 C 1.52997 * 109.46891 * 299.99398 * 28 3 2 30 30 C 1.52999 * 109.47133 * 59.99675 * 28 3 2 31 31 H 1.08998 * 109.46908 * 59.99983 * 1 2 3 32 32 H 1.08993 * 109.47173 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.46813 * 300.00500 * 1 2 3 34 34 H 0.96996 * 119.99439 * 359.97438 * 7 5 3 35 35 H 1.08991 * 109.47605 * 59.99984 * 8 7 5 36 36 H 1.09002 * 109.46812 * 299.99529 * 8 7 5 37 37 H 1.09002 * 113.61428 * 25.41618 * 11 9 8 38 38 H 1.08994 * 113.67326 * 254.46065 * 11 9 8 39 39 H 1.00895 * 111.00207 * 18.08950 * 14 12 11 40 40 H 1.09004 * 109.47131 * 60.00016 * 15 14 12 41 41 H 1.08994 * 109.47471 * 299.99766 * 15 14 12 42 42 H 0.97000 * 119.99715 * 359.97438 * 18 16 15 43 43 H 0.96991 * 119.99827 * 179.97438 * 22 21 19 44 44 H 1.09001 * 113.61029 * 139.93637 * 27 12 11 45 45 H 1.09002 * 113.61601 * 270.75689 * 27 12 11 46 46 H 1.09005 * 109.46769 * 179.97438 * 28 3 2 47 47 H 1.08998 * 109.47367 * 60.00515 * 29 28 3 48 48 H 1.09002 * 109.47014 * 180.02562 * 29 28 3 49 49 H 1.09000 * 109.47611 * 300.00407 * 29 28 3 50 50 H 1.09000 * 109.47159 * 60.00264 * 30 28 3 51 51 H 1.09002 * 109.46836 * 179.97438 * 30 28 3 52 52 H 1.08998 * 109.47189 * 299.99524 * 30 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 1 1.3450 1.9994 0.5138 5 6 2.2147 1.7642 -1.4208 6 8 1.9793 1.0104 -2.3413 7 7 2.6591 3.0123 -1.6687 8 6 2.8572 3.4584 -3.0500 9 6 3.3633 4.9023 -3.0518 10 1 2.8281 5.5394 -2.3476 11 6 4.8949 5.0205 -2.9493 12 6 4.7952 6.1607 -3.9764 13 1 4.6530 7.1431 -3.5259 14 7 5.8672 6.1436 -4.9806 15 6 6.8462 7.2083 -4.7237 16 6 7.9285 7.1589 -5.7713 17 8 7.8880 6.3197 -6.6461 18 7 8.9415 8.0473 -5.7361 19 6 9.9257 8.0027 -6.6893 20 1 9.8893 7.2559 -7.4688 21 6 10.9670 8.9222 -6.6564 22 7 11.0111 9.8312 -5.7084 23 14 12.3040 8.8664 -7.9598 24 1 11.6963 9.0603 -9.3009 25 1 13.2915 9.9452 -7.7025 26 1 12.9873 7.5488 -7.9118 27 6 3.4885 5.5094 -4.4592 28 6 3.3590 1.2632 0.7213 29 6 3.1514 0.7975 2.1638 30 6 4.2927 0.2891 0.0001 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8900 34 1 2.8469 3.6153 -0.9325 35 1 1.9113 3.4040 -3.5887 36 1 3.5906 2.8161 -3.5375 37 1 5.4263 4.1441 -3.3202 38 1 5.2441 5.3451 -1.9692 39 1 6.3158 5.2405 -5.0152 40 1 7.2885 7.0650 -3.7378 41 1 6.3479 8.1769 -4.7611 42 1 8.9737 8.7187 -5.0367 43 1 11.7381 10.4728 -5.6852 44 1 2.7040 6.2281 -4.6961 45 1 3.6345 4.7678 -5.2446 46 1 3.8025 2.2590 0.7209 47 1 2.7081 -0.1983 2.1639 48 1 4.1122 0.7678 2.6778 49 1 2.4862 1.4914 2.6776 50 1 4.4406 0.6210 -1.0276 51 1 5.2537 0.2594 0.5137 52 1 3.8494 -0.7066 0.0002 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001316620152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:04:23 Heat of formation + Delta-G solvation = -136.040625 kcal Electronic energy + Delta-G solvation = -29401.623669 eV Core-core repulsion = 25207.336335 eV Total energy + Delta-G solvation = -4194.287334 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.37703 -40.50282 -39.79868 -38.53327 -36.27793 -36.00493 -35.59500 -34.34450 -33.23491 -30.08206 -28.64333 -28.05490 -27.74656 -26.65710 -26.51833 -25.62647 -22.61793 -22.24714 -21.31722 -21.00955 -20.34396 -19.84940 -18.54008 -17.90612 -17.72633 -17.15103 -16.88123 -16.49323 -16.37496 -16.28559 -16.01037 -15.78210 -15.58650 -15.21602 -15.05976 -14.85018 -14.52845 -14.39371 -14.17653 -13.79836 -13.55566 -13.51035 -13.38680 -13.33204 -12.98398 -12.95518 -12.84000 -12.63901 -12.58145 -12.43874 -12.14546 -12.13111 -11.88329 -11.77593 -11.68328 -11.58516 -11.50913 -11.39661 -11.27610 -10.34466 -10.26668 -10.10540 -10.01721 -9.19560 -8.46805 -5.95577 1.39631 1.41608 1.52437 1.54668 2.05550 2.06805 2.29438 2.80555 2.97902 3.20433 3.49340 3.57166 3.63133 3.72022 3.75446 3.89937 3.95800 4.06755 4.13055 4.28339 4.34470 4.36301 4.44566 4.47287 4.52918 4.53133 4.60721 4.66050 4.72577 4.82434 4.83125 4.86167 4.89386 4.92605 4.95021 5.03033 5.14265 5.14653 5.23198 5.34739 5.38189 5.40684 5.47554 5.51377 5.94707 6.02181 6.21565 6.43088 6.55890 6.60600 7.12556 7.23403 7.56334 8.12201 8.70206 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.021247 B = 0.001585 C = 0.001538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.518271 B =17662.651445 C =18203.452641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.377 6.377 3 C 0.078 3.922 4 H 0.118 0.882 5 C 0.485 3.515 6 O -0.579 6.579 7 N -0.710 5.710 8 C 0.134 3.866 9 C -0.099 4.099 10 H 0.126 0.874 11 C -0.159 4.159 12 C 0.062 3.938 13 H 0.114 0.886 14 N -0.677 5.677 15 C 0.067 3.933 16 C 0.434 3.566 17 O -0.627 6.627 18 N -0.572 5.572 19 C -0.337 4.337 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.918 5.918 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.269 1.269 26 H -0.273 1.273 27 C -0.120 4.120 28 C -0.083 4.083 29 C -0.140 4.140 30 C -0.145 4.145 31 H 0.030 0.970 32 H 0.095 0.905 33 H 0.068 0.932 34 H 0.417 0.583 35 H 0.059 0.941 36 H 0.046 0.954 37 H 0.069 0.931 38 H 0.086 0.914 39 H 0.343 0.657 40 H 0.068 0.932 41 H 0.105 0.895 42 H 0.397 0.603 43 H 0.278 0.722 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.108 0.892 47 H 0.052 0.948 48 H 0.067 0.933 49 H 0.072 0.928 50 H 0.030 0.970 51 H 0.069 0.931 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.113 -10.550 21.900 32.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.294 6.294 3 C 0.017 3.983 4 H 0.135 0.865 5 C 0.272 3.728 6 O -0.458 6.458 7 N -0.365 5.365 8 C 0.010 3.990 9 C -0.118 4.118 10 H 0.144 0.856 11 C -0.198 4.198 12 C -0.048 4.048 13 H 0.132 0.868 14 N -0.308 5.308 15 C -0.065 4.065 16 C 0.222 3.778 17 O -0.514 6.514 18 N -0.209 5.209 19 C -0.467 4.467 20 H 0.095 0.905 21 C -0.211 4.211 22 N -0.559 5.559 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.193 1.193 26 H -0.198 1.198 27 C -0.159 4.159 28 C -0.102 4.102 29 C -0.198 4.198 30 C -0.203 4.203 31 H 0.048 0.952 32 H 0.113 0.887 33 H 0.087 0.913 34 H 0.254 0.746 35 H 0.078 0.922 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.105 0.895 39 H 0.162 0.838 40 H 0.086 0.914 41 H 0.123 0.877 42 H 0.231 0.769 43 H 0.087 0.913 44 H 0.100 0.900 45 H 0.088 0.912 46 H 0.126 0.874 47 H 0.071 0.929 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.050 0.950 51 H 0.088 0.912 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -21.403 -11.281 20.239 31.543 hybrid contribution 1.202 0.260 0.092 1.234 sum -20.200 -11.022 20.330 30.706 Atomic orbital electron populations 1.22989 0.79715 1.03957 1.00451 1.87970 1.21160 1.26011 1.94272 1.22340 0.98398 0.87001 0.90598 0.86494 1.21972 0.76201 0.81706 0.92947 1.90706 1.52158 1.55099 1.47850 1.45939 1.66983 1.14113 1.09442 1.21245 1.00222 0.94652 0.82832 1.22572 0.95921 0.94360 0.98927 0.85621 1.23782 0.96296 0.98860 1.00831 1.23214 0.91646 0.99222 0.90748 0.86813 1.60028 1.13299 1.07323 1.50130 1.21568 0.91819 0.97897 0.95258 1.21022 0.84641 0.83355 0.88793 1.90493 1.79007 1.40802 1.41056 1.41925 1.21420 1.30091 1.27511 1.19632 1.02913 1.15951 1.08184 0.90502 1.26019 1.00363 0.94806 0.99918 1.69657 1.34274 1.18194 1.33794 0.85004 0.77339 0.78163 0.77905 1.19843 1.19320 1.19783 1.23043 0.97121 0.99765 0.96011 1.21295 0.91424 1.01478 0.95992 1.21751 1.02715 1.01905 0.93393 1.21760 0.99737 0.99706 0.99067 0.95157 0.88681 0.91310 0.74586 0.92241 0.93563 0.91233 0.89547 0.83788 0.91396 0.87699 0.76891 0.91255 0.90048 0.91174 0.87363 0.92879 0.91434 0.90875 0.95045 0.91159 0.93273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.31 10.81 113.37 1.23 1.54 16 2 O -0.38 -6.78 8.54 -129.99 -1.11 -7.89 16 3 C 0.08 1.03 2.26 29.85 0.07 1.09 16 4 H 0.12 0.75 7.79 -2.39 -0.02 0.73 16 5 C 0.49 9.37 5.87 87.65 0.51 9.88 16 6 O -0.58 -17.48 16.51 15.96 0.26 -17.21 16 7 N -0.71 -9.48 5.52 -463.06 -2.55 -12.03 16 8 C 0.13 2.25 5.52 86.38 0.48 2.73 16 9 C -0.10 -1.26 3.75 -10.21 -0.04 -1.30 16 10 H 0.13 0.93 8.14 -2.38 -0.02 0.91 16 11 C -0.16 -2.53 7.27 31.18 0.23 -2.30 16 12 C 0.06 1.25 4.16 45.44 0.19 1.44 16 13 H 0.11 1.94 7.88 -2.39 -0.02 1.92 16 14 N -0.68 -20.83 6.24 -492.85 -3.07 -23.91 16 15 C 0.07 2.23 6.02 85.56 0.52 2.74 16 16 C 0.43 20.77 7.82 87.66 0.69 21.45 16 17 O -0.63 -35.39 15.78 -3.07 -0.05 -35.44 16 18 N -0.57 -29.42 5.29 -306.97 -1.62 -31.04 16 19 C -0.34 -19.31 9.68 84.04 0.81 -18.50 16 20 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 21 C -0.01 -0.59 5.50 84.93 0.47 -0.13 16 22 N -0.92 -49.30 13.05 21.67 0.28 -49.02 16 23 Si 0.99 43.07 29.55 68.60 2.03 45.10 16 24 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 25 H -0.27 -10.92 7.11 99.48 0.71 -10.21 16 26 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 27 C -0.12 -2.19 7.44 31.12 0.23 -1.96 16 28 C -0.08 -0.87 2.77 -10.79 -0.03 -0.90 16 29 C -0.14 -1.10 9.05 71.98 0.65 -0.45 16 30 C -0.15 -2.36 8.80 71.98 0.63 -1.72 16 31 H 0.03 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.07 0.47 8.08 -2.39 -0.02 0.45 16 34 H 0.42 2.51 8.26 -92.71 -0.77 1.74 16 35 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.05 1.02 7.85 -2.39 -0.02 1.00 16 37 H 0.07 1.38 7.59 -2.39 -0.02 1.36 16 38 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.34 11.46 7.91 -89.70 -0.71 10.75 16 40 H 0.07 1.94 8.14 -2.38 -0.02 1.93 16 41 H 0.10 3.11 8.13 -2.39 -0.02 3.09 16 42 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 43 H 0.28 13.98 8.31 -92.71 -0.77 13.21 16 44 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.58 8.10 -2.39 -0.02 1.56 16 46 H 0.11 0.63 7.92 -2.38 -0.02 0.61 16 47 H 0.05 0.58 7.68 -2.39 -0.02 0.56 16 48 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 49 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 50 H 0.03 0.64 7.22 -2.39 -0.02 0.62 16 51 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.05 0.96 7.68 -2.39 -0.02 0.94 16 Total: -1.00 -78.51 425.38 -0.48 -78.99 By element: Atomic # 1 Polarization: 40.11 SS G_CDS: -1.28 Total: 38.83 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 6.63 Total: 13.62 kcal Atomic # 7 Polarization: -109.03 SS G_CDS: -6.97 Total: -116.00 kcal Atomic # 8 Polarization: -59.65 SS G_CDS: -0.90 Total: -60.54 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -78.51 -0.48 -78.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316620152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.049 kcal (2) G-P(sol) polarization free energy of solvation -78.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds