Wall clock time and date at job start Wed Apr 1 2020 00:27:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08997 * 109.48610 * 55.02295 * 3 2 1 5 5 C 1.53110 * 109.48913 * 174.96520 * 3 2 1 6 6 C 1.53182 * 109.15412 * 177.50977 * 5 3 2 7 7 H 1.08996 * 109.54643 * 63.06274 * 6 5 3 8 8 C 1.50700 * 109.54203 * 183.23995 * 6 5 3 9 9 O 1.21294 * 119.99902 * 359.81929 * 8 6 5 10 10 N 1.34774 * 120.00282 * 179.81972 * 8 6 5 11 11 C 1.46503 * 120.00236 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46965 * 180.02562 * 11 10 8 13 13 N 1.46906 * 109.47022 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99793 * 293.95609 * 13 12 11 15 15 C 1.46898 * 110.99820 * 169.99926 * 13 12 11 16 16 C 1.50706 * 109.46563 * 189.99919 * 15 13 12 17 17 O 1.21287 * 120.00244 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99391 * 180.02562 * 16 15 13 19 19 C 1.37098 * 119.99877 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99927 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00234 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47166 * 90.00294 * 23 21 19 25 25 H 1.48500 * 109.47200 * 210.00313 * 23 21 19 26 26 H 1.48505 * 109.46946 * 330.00311 * 23 21 19 27 27 C 1.53181 * 109.10896 * 303.14544 * 6 5 3 28 28 C 1.53096 * 109.15787 * 56.93962 * 27 6 5 29 29 O 1.42901 * 109.41691 * 302.38607 * 28 27 6 30 30 H 1.08998 * 109.47236 * 60.00180 * 1 2 3 31 31 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47044 * 299.99803 * 1 2 3 33 33 H 1.08999 * 109.46825 * 239.99706 * 2 1 3 34 34 H 1.08998 * 109.47236 * 119.99820 * 2 1 3 35 35 H 1.09000 * 109.45480 * 57.64534 * 5 3 2 36 36 H 1.08997 * 109.59635 * 297.45182 * 5 3 2 37 37 H 0.97002 * 119.99826 * 0.02562 * 10 8 6 38 38 H 1.08997 * 109.46905 * 60.00214 * 11 10 8 39 39 H 1.09001 * 109.46994 * 300.00173 * 11 10 8 40 40 H 1.08997 * 109.47190 * 60.00320 * 12 11 10 41 41 H 1.09001 * 109.47349 * 299.99887 * 12 11 10 42 42 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 43 43 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 44 44 H 1.09004 * 109.46970 * 179.97438 * 14 13 12 45 45 H 1.08994 * 109.47410 * 309.99936 * 15 13 12 46 46 H 1.08999 * 109.47216 * 70.00266 * 15 13 12 47 47 H 0.97003 * 120.00555 * 0.02562 * 18 16 15 48 48 H 0.96999 * 120.00290 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.52175 * 176.84573 * 27 6 5 50 50 H 1.09005 * 109.52306 * 297.03915 * 27 6 5 51 51 H 1.08995 * 109.47980 * 62.37820 * 28 27 6 52 52 H 1.09005 * 109.47460 * 182.40519 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 0.8419 5 6 3.5658 1.4449 0.1267 6 6 4.0731 2.8889 0.0633 7 1 3.6809 3.4507 0.9109 8 6 5.5795 2.8963 0.1072 9 8 6.1891 1.8506 0.1852 10 7 6.2493 4.0649 0.0599 11 6 7.7137 4.0721 0.1032 12 6 8.2187 5.5148 0.0358 13 7 9.6871 5.5220 0.0785 14 6 10.1783 5.0400 1.3763 15 6 10.2158 6.8595 -0.2208 16 6 11.7088 6.7785 -0.4101 17 8 12.2763 5.7116 -0.3063 18 7 12.4132 7.8918 -0.6947 19 6 13.7714 7.8183 -0.8664 20 1 14.2768 6.8683 -0.7740 21 6 14.4976 8.9658 -1.1603 22 7 13.8826 10.1216 -1.2732 23 14 16.3481 8.8656 -1.3950 24 1 16.6524 8.6065 -2.8251 25 1 16.9698 10.1492 -0.9813 26 1 16.8932 7.7614 -0.5649 27 6 3.5955 3.5313 -1.2427 28 6 2.0685 3.4484 -1.3143 29 8 1.6621 2.0815 -1.2211 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9990 0.8703 -0.6920 36 1 3.8543 0.9989 1.0785 37 1 5.7618 4.9012 -0.0021 38 1 8.1050 3.5098 -0.7446 39 1 8.0520 3.6121 1.0316 40 1 7.8274 6.0767 0.8838 41 1 7.8803 5.9752 -0.8925 42 1 9.8289 4.0208 1.5414 43 1 9.8023 5.6859 2.1698 44 1 11.2682 5.0552 1.3807 45 1 9.7539 7.2370 -1.1330 46 1 9.9904 7.5328 0.6062 47 1 11.9594 8.7451 -0.7773 48 1 14.3896 10.9228 -1.4780 49 1 3.9052 4.5760 -1.2692 50 1 4.0292 3.0001 -2.0899 51 1 1.6347 4.0137 -0.4895 52 1 1.7258 3.8657 -2.2612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317465178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:03 Heat of formation + Delta-G solvation = -129.309631 kcal Electronic energy + Delta-G solvation = -29358.269490 eV Core-core repulsion = 25164.274034 eV Total energy + Delta-G solvation = -4193.995456 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.71120 -39.18491 -38.62583 -36.83008 -34.81032 -34.42114 -34.05733 -33.79642 -31.26808 -30.26422 -29.62119 -27.75563 -26.49502 -25.22297 -24.22326 -23.67690 -22.26784 -21.28007 -21.15475 -20.08180 -19.18788 -17.86909 -17.49515 -16.89950 -16.55098 -16.15856 -16.00448 -15.78948 -15.28544 -15.07584 -14.74641 -14.57377 -14.47291 -14.18103 -14.08782 -13.84729 -13.73513 -13.47029 -13.32673 -13.26720 -12.89158 -12.28150 -12.22132 -12.14877 -11.89826 -11.79635 -11.58791 -11.53660 -11.42472 -11.31605 -11.29796 -11.09366 -11.07740 -10.95241 -10.78750 -10.40037 -10.24295 -10.22456 -9.75155 -9.49072 -9.24061 -8.50191 -8.00678 -7.91168 -6.43068 -3.83804 2.39561 2.82314 3.17266 3.26076 3.31891 3.34172 3.88350 3.99580 4.11272 4.20132 4.29270 4.31934 4.44062 4.63402 4.67289 4.76471 4.87513 4.91108 4.91421 4.99335 5.01750 5.09932 5.16043 5.23231 5.25490 5.30180 5.35601 5.41708 5.55492 5.58386 5.60625 5.64722 5.66299 5.72010 5.81047 5.86734 5.87778 5.90398 5.94375 5.98084 6.20232 6.25921 6.53334 6.81876 7.15681 7.24655 7.30221 7.54253 7.99163 8.05048 8.60390 9.17015 9.52792 10.04663 10.74676 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.001471 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.848559 B =19036.405947 C =19447.838757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.117 4.117 3 C 0.090 3.910 4 H 0.058 0.942 5 C -0.130 4.130 6 C -0.109 4.109 7 H 0.097 0.903 8 C 0.517 3.483 9 O -0.535 6.535 10 N -0.728 5.728 11 C 0.121 3.879 12 C 0.045 3.955 13 N -0.515 5.515 14 C 0.018 3.982 15 C 0.047 3.953 16 C 0.443 3.557 17 O -0.576 6.576 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.023 3.977 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.148 4.148 28 C 0.064 3.936 29 O -0.376 6.376 30 H 0.062 0.938 31 H 0.054 0.946 32 H 0.051 0.949 33 H 0.072 0.928 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.398 0.602 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.063 0.937 43 H 0.015 0.985 44 H 0.098 0.902 45 H 0.088 0.912 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.079 0.921 50 H 0.080 0.920 51 H 0.052 0.948 52 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.542 -9.954 3.661 30.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.154 4.154 3 C 0.033 3.967 4 H 0.076 0.924 5 C -0.168 4.168 6 C -0.130 4.130 7 H 0.115 0.885 8 C 0.303 3.697 9 O -0.411 6.411 10 N -0.380 5.380 11 C -0.003 4.003 12 C -0.084 4.084 13 N -0.239 5.239 14 C -0.130 4.130 15 C -0.084 4.084 16 C 0.228 3.772 17 O -0.460 6.460 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.186 4.186 28 C -0.013 4.013 29 O -0.295 6.295 30 H 0.081 0.919 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.099 0.901 37 H 0.232 0.768 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.054 0.946 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.034 0.966 44 H 0.117 0.883 45 H 0.107 0.893 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.098 0.902 50 H 0.098 0.902 51 H 0.070 0.930 52 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -27.525 -11.664 3.245 30.070 hybrid contribution 0.375 1.936 0.615 2.065 sum -27.149 -9.729 3.860 29.097 Atomic orbital electron populations 1.21720 0.95198 1.01589 1.02187 1.21543 0.96648 0.94161 1.03068 1.22194 0.93200 0.94323 0.86999 0.92396 1.22063 0.95398 0.94858 1.04514 1.21387 0.92270 0.99346 1.00010 0.88490 1.20499 0.89652 0.83579 0.75972 1.90735 1.70020 1.31605 1.48695 1.45962 1.07820 1.08782 1.75485 1.21352 0.78230 0.97302 1.03398 1.22250 0.89396 0.95452 1.01311 1.61445 1.05259 1.24607 1.32615 1.22629 1.04183 0.98887 0.87261 1.21867 0.96070 0.89260 1.01201 1.19703 0.87743 0.85160 0.84554 1.90494 1.71077 1.28560 1.55882 1.41858 1.08002 1.08415 1.61776 1.19707 0.82159 0.96121 1.44867 0.87884 1.25250 1.00648 0.94686 0.97296 1.69608 1.36875 0.98957 1.48932 0.85860 0.82106 0.77618 0.78725 1.20385 1.20952 1.19413 1.22223 0.97654 1.01609 0.97147 1.22542 0.92859 0.83410 1.02455 1.87951 1.78417 1.24474 1.38685 0.91933 0.92737 0.93008 0.90910 0.90475 0.89972 0.90109 0.76795 0.90232 0.91175 0.94609 0.90307 0.91871 0.96633 0.88340 0.89329 0.93362 0.77512 0.91887 0.90216 0.90162 0.92996 0.88390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.81 37.16 0.36 -0.49 16 2 C -0.12 -0.74 5.64 -26.73 -0.15 -0.89 16 3 C 0.09 0.62 2.64 -26.68 -0.07 0.55 16 4 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 5 C -0.13 -1.05 4.02 -26.58 -0.11 -1.15 16 6 C -0.11 -0.79 2.61 -91.58 -0.24 -1.03 16 7 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 8 C 0.52 5.50 7.16 -10.99 -0.08 5.42 16 9 O -0.53 -8.07 15.97 5.55 0.09 -7.98 16 10 N -0.73 -6.60 5.46 -60.29 -0.33 -6.93 16 11 C 0.12 1.42 5.60 -4.04 -0.02 1.40 16 12 C 0.04 0.52 5.07 -3.82 -0.02 0.50 16 13 N -0.52 -8.33 4.50 -244.37 -1.10 -9.43 16 14 C 0.02 0.29 8.96 60.07 0.54 0.83 16 15 C 0.05 0.82 5.45 -4.97 -0.03 0.79 16 16 C 0.44 10.32 7.47 -10.98 -0.08 10.23 16 17 O -0.58 -15.42 13.91 5.55 0.08 -15.34 16 18 N -0.56 -14.10 5.29 -10.96 -0.06 -14.16 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 22 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 23 Si 0.93 20.95 29.55 -169.99 -5.02 15.93 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 26 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 27 C -0.15 -0.88 5.30 -26.59 -0.14 -1.02 16 28 C 0.06 0.36 6.84 37.21 0.25 0.61 16 29 O -0.38 -3.00 9.94 -35.23 -0.35 -3.35 16 30 H 0.06 0.41 7.82 -51.93 -0.41 0.00 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.08 0.82 8.03 -51.93 -0.42 0.40 16 36 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.40 2.37 7.97 -40.82 -0.33 2.04 16 38 H 0.08 1.11 8.14 -51.93 -0.42 0.69 16 39 H 0.07 0.91 6.55 -51.93 -0.34 0.57 16 40 H 0.04 0.37 8.12 -51.93 -0.42 -0.05 16 41 H 0.08 0.81 7.93 -51.93 -0.41 0.40 16 42 H 0.06 0.92 6.47 -51.93 -0.34 0.59 16 43 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 44 H 0.10 1.94 5.83 -51.93 -0.30 1.64 16 45 H 0.09 1.36 7.93 -51.93 -0.41 0.95 16 46 H 0.05 0.76 8.12 -51.93 -0.42 0.33 16 47 H 0.39 9.33 7.90 -40.82 -0.32 9.00 16 48 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 49 H 0.08 0.32 7.68 -51.93 -0.40 -0.08 16 50 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 51 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 52 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 414.28 15.07 6.24 6.24 Total: -1.00 -33.70 414.28 -8.85 -42.55 By element: Atomic # 1 Polarization: 17.30 SS G_CDS: -9.10 Total: 8.20 kcal Atomic # 6 Polarization: 7.87 SS G_CDS: -0.02 Total: 7.85 kcal Atomic # 7 Polarization: -53.35 SS G_CDS: -0.76 Total: -54.11 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -0.18 Total: -26.67 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.70 -8.85 -42.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317465178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.757 kcal (2) G-P(sol) polarization free energy of solvation -33.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.461 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds