Wall clock time and date at job start Wed Apr 1 2020 00:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.46862 * 2 1 4 4 H 1.08997 * 109.48610 * 55.02295 * 3 2 1 5 5 C 1.53110 * 109.48913 * 174.96520 * 3 2 1 6 6 C 1.53182 * 109.15412 * 177.50977 * 5 3 2 7 7 H 1.08996 * 109.54643 * 63.06274 * 6 5 3 8 8 C 1.50700 * 109.54203 * 183.23995 * 6 5 3 9 9 O 1.21294 * 119.99902 * 359.81929 * 8 6 5 10 10 N 1.34774 * 120.00282 * 179.81972 * 8 6 5 11 11 C 1.46503 * 120.00236 * 179.97438 * 10 8 6 12 12 C 1.52996 * 109.46965 * 180.02562 * 11 10 8 13 13 N 1.46906 * 109.47022 * 180.02562 * 12 11 10 14 14 C 1.46901 * 110.99793 * 293.95609 * 13 12 11 15 15 C 1.46898 * 110.99820 * 169.99926 * 13 12 11 16 16 C 1.50706 * 109.46563 * 189.99919 * 15 13 12 17 17 O 1.21287 * 120.00244 * 0.02562 * 16 15 13 18 18 N 1.34778 * 119.99391 * 180.02562 * 16 15 13 19 19 C 1.37098 * 119.99877 * 179.97438 * 18 16 15 20 20 H 1.08002 * 119.99927 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00234 * 179.97438 * 19 18 16 22 22 N 1.31408 * 119.99935 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00107 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47166 * 90.00294 * 23 21 19 25 25 H 1.48500 * 109.47200 * 210.00313 * 23 21 19 26 26 H 1.48505 * 109.46946 * 330.00311 * 23 21 19 27 27 C 1.53181 * 109.10896 * 303.14544 * 6 5 3 28 28 C 1.53096 * 109.15787 * 56.93962 * 27 6 5 29 29 O 1.42901 * 109.41691 * 302.38607 * 28 27 6 30 30 H 1.08998 * 109.47236 * 60.00180 * 1 2 3 31 31 H 1.09004 * 109.46990 * 180.02562 * 1 2 3 32 32 H 1.08997 * 109.47044 * 299.99803 * 1 2 3 33 33 H 1.08999 * 109.46825 * 239.99706 * 2 1 3 34 34 H 1.08998 * 109.47236 * 119.99820 * 2 1 3 35 35 H 1.09000 * 109.45480 * 57.64534 * 5 3 2 36 36 H 1.08997 * 109.59635 * 297.45182 * 5 3 2 37 37 H 0.97002 * 119.99826 * 0.02562 * 10 8 6 38 38 H 1.08997 * 109.46905 * 60.00214 * 11 10 8 39 39 H 1.09001 * 109.46994 * 300.00173 * 11 10 8 40 40 H 1.08997 * 109.47190 * 60.00320 * 12 11 10 41 41 H 1.09001 * 109.47349 * 299.99887 * 12 11 10 42 42 H 1.09002 * 109.47401 * 59.99808 * 14 13 12 43 43 H 1.09001 * 109.46874 * 299.99821 * 14 13 12 44 44 H 1.09004 * 109.46970 * 179.97438 * 14 13 12 45 45 H 1.08994 * 109.47410 * 309.99936 * 15 13 12 46 46 H 1.08999 * 109.47216 * 70.00266 * 15 13 12 47 47 H 0.97003 * 120.00555 * 0.02562 * 18 16 15 48 48 H 0.96999 * 120.00290 * 179.97438 * 22 21 19 49 49 H 1.08995 * 109.52175 * 176.84573 * 27 6 5 50 50 H 1.09005 * 109.52306 * 297.03915 * 27 6 5 51 51 H 1.08995 * 109.47980 * 62.37820 * 28 27 6 52 52 H 1.09005 * 109.47460 * 182.40519 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6058 1.9816 0.8419 5 6 3.5658 1.4449 0.1267 6 6 4.0731 2.8889 0.0633 7 1 3.6809 3.4507 0.9109 8 6 5.5795 2.8963 0.1072 9 8 6.1891 1.8506 0.1852 10 7 6.2493 4.0649 0.0599 11 6 7.7137 4.0721 0.1032 12 6 8.2187 5.5148 0.0358 13 7 9.6871 5.5220 0.0785 14 6 10.1783 5.0400 1.3763 15 6 10.2158 6.8595 -0.2208 16 6 11.7088 6.7785 -0.4101 17 8 12.2763 5.7116 -0.3063 18 7 12.4132 7.8918 -0.6947 19 6 13.7714 7.8183 -0.8664 20 1 14.2768 6.8683 -0.7740 21 6 14.4976 8.9658 -1.1603 22 7 13.8826 10.1216 -1.2732 23 14 16.3481 8.8656 -1.3950 24 1 16.6524 8.6065 -2.8251 25 1 16.9698 10.1492 -0.9813 26 1 16.8932 7.7614 -0.5649 27 6 3.5955 3.5313 -1.2427 28 6 2.0685 3.4484 -1.3143 29 8 1.6621 2.0815 -1.2211 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.9990 0.8703 -0.6920 36 1 3.8543 0.9989 1.0785 37 1 5.7618 4.9012 -0.0021 38 1 8.1050 3.5098 -0.7446 39 1 8.0520 3.6121 1.0316 40 1 7.8274 6.0767 0.8838 41 1 7.8803 5.9752 -0.8925 42 1 9.8289 4.0208 1.5414 43 1 9.8023 5.6859 2.1698 44 1 11.2682 5.0552 1.3807 45 1 9.7539 7.2370 -1.1330 46 1 9.9904 7.5328 0.6062 47 1 11.9594 8.7451 -0.7773 48 1 14.3896 10.9228 -1.4780 49 1 3.9052 4.5760 -1.2692 50 1 4.0292 3.0001 -2.0899 51 1 1.6347 4.0137 -0.4895 52 1 1.7258 3.8657 -2.2612 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317465178.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:27:02 Heat of formation + Delta-G solvation = -155.300111 kcal Electronic energy + Delta-G solvation = -29359.396522 eV Core-core repulsion = 25164.274034 eV Total energy + Delta-G solvation = -4195.122488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.43104 -40.40449 -39.78581 -38.18176 -36.03628 -35.57711 -34.94872 -34.65175 -33.27183 -30.85817 -30.62135 -29.12849 -27.33823 -26.72638 -25.26992 -24.49257 -22.92114 -22.34140 -21.75418 -21.00979 -20.78619 -19.85042 -18.29041 -17.69631 -17.48841 -17.31402 -16.99205 -16.67683 -16.52901 -16.32689 -15.92288 -15.73747 -15.51325 -15.24081 -15.10130 -14.90789 -14.63512 -14.54896 -14.28358 -14.18521 -13.78579 -13.76646 -13.45133 -13.04171 -12.95081 -12.75200 -12.71962 -12.58136 -12.55607 -12.40553 -12.35590 -12.16182 -12.11200 -12.08849 -11.79674 -11.60880 -11.45562 -11.35563 -10.95223 -10.39107 -10.28597 -10.13388 -9.98729 -9.24561 -8.45853 -5.94012 1.38125 1.42107 1.54247 1.57109 1.97355 2.07151 2.30657 2.86191 2.91495 3.21395 3.42023 3.54734 3.62289 3.76587 3.84137 3.93884 4.05497 4.14233 4.18059 4.25330 4.35035 4.38342 4.41308 4.45837 4.46517 4.53000 4.53387 4.62806 4.63310 4.73368 4.75159 4.82695 4.86397 4.91662 4.94230 5.07709 5.12727 5.14187 5.19332 5.20055 5.31220 5.37109 5.42236 5.46955 5.85016 6.04653 6.16531 6.35296 6.51266 6.62468 7.14735 7.21852 7.58294 8.14872 8.71459 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.036792 B = 0.001471 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 760.848559 B =19036.405947 C =19447.838757 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.120 4.120 3 C 0.095 3.905 4 H 0.076 0.924 5 C -0.129 4.129 6 C -0.101 4.101 7 H 0.128 0.872 8 C 0.514 3.486 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.129 3.871 12 C 0.053 3.947 13 N -0.541 5.541 14 C 0.025 3.975 15 C 0.061 3.939 16 C 0.438 3.562 17 O -0.617 6.617 18 N -0.573 5.573 19 C -0.333 4.333 20 H 0.077 0.923 21 C -0.011 4.011 22 N -0.919 5.919 23 Si 0.990 3.010 24 H -0.272 1.272 25 H -0.270 1.270 26 H -0.275 1.275 27 C -0.144 4.144 28 C 0.060 3.940 29 O -0.397 6.397 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.085 0.915 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.418 0.582 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.071 0.929 43 H 0.036 0.964 44 H 0.055 0.945 45 H 0.115 0.885 46 H 0.074 0.926 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.106 0.894 50 H 0.057 0.943 51 H 0.073 0.927 52 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.772 -8.019 4.132 32.067 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.157 4.157 3 C 0.037 3.963 4 H 0.094 0.906 5 C -0.167 4.167 6 C -0.122 4.122 7 H 0.146 0.854 8 C 0.301 3.699 9 O -0.467 6.467 10 N -0.364 5.364 11 C 0.004 3.996 12 C -0.074 4.074 13 N -0.266 5.266 14 C -0.123 4.123 15 C -0.070 4.070 16 C 0.226 3.774 17 O -0.503 6.503 18 N -0.211 5.211 19 C -0.463 4.463 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.814 3.186 24 H -0.198 1.198 25 H -0.195 1.195 26 H -0.199 1.199 27 C -0.182 4.182 28 C -0.016 4.016 29 O -0.316 6.316 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.103 0.897 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.256 0.744 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.118 0.882 42 H 0.090 0.910 43 H 0.055 0.945 44 H 0.074 0.926 45 H 0.133 0.867 46 H 0.091 0.909 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -29.807 -9.674 3.710 31.556 hybrid contribution 1.030 1.273 0.468 1.703 sum -28.776 -8.401 4.178 30.267 Atomic orbital electron populations 1.21681 0.94523 1.01963 1.02103 1.21582 0.97215 0.94128 1.02814 1.22196 0.92038 0.94700 0.87333 0.90649 1.22022 0.96428 0.95246 1.03033 1.21412 0.89460 0.99287 1.02021 0.85429 1.21164 0.91069 0.82997 0.74661 1.90718 1.71302 1.33549 1.51125 1.45760 1.06707 1.09460 1.74506 1.21080 0.79751 0.97240 1.01502 1.22248 0.86297 0.95371 1.03517 1.61325 1.08278 1.24174 1.32797 1.22457 1.01518 1.00099 0.88235 1.21732 0.91259 0.90537 1.03447 1.20855 0.90384 0.83898 0.82274 1.90477 1.72810 1.30036 1.56982 1.41912 1.07390 1.09219 1.62579 1.19640 0.83841 0.95662 1.47129 0.90514 1.25971 1.04573 0.94088 0.96401 1.69658 1.38329 0.99319 1.48734 0.84970 0.77131 0.77830 0.78664 1.19757 1.19474 1.19946 1.22227 0.98019 1.02614 0.95291 1.22734 0.92362 0.82543 1.03979 1.87935 1.78596 1.25889 1.39229 0.92909 0.92202 0.92084 0.92326 0.89666 0.92849 0.90665 0.74445 0.93022 0.92584 0.91886 0.88246 0.91013 0.94544 0.92592 0.86672 0.90851 0.76927 0.91325 0.87565 0.92406 0.90870 0.87336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.81 71.98 0.71 -0.80 16 2 C -0.12 -1.46 5.64 30.59 0.17 -1.29 16 3 C 0.09 1.19 2.64 30.63 0.08 1.27 16 4 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 5 C -0.13 -2.04 4.02 30.69 0.12 -1.91 16 6 C -0.10 -1.27 2.61 -11.42 -0.03 -1.30 16 7 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 8 C 0.51 10.43 7.16 87.66 0.63 11.06 16 9 O -0.59 -18.24 15.97 -3.07 -0.05 -18.29 16 10 N -0.71 -11.31 5.46 -463.05 -2.53 -13.84 16 11 C 0.13 2.87 5.60 86.38 0.48 3.35 16 12 C 0.05 1.07 5.07 86.30 0.44 1.51 16 13 N -0.54 -16.65 4.50 -927.03 -4.17 -20.82 16 14 C 0.02 0.79 8.96 127.69 1.14 1.93 16 15 C 0.06 1.99 5.45 85.56 0.47 2.45 16 16 C 0.44 20.56 7.47 87.66 0.66 21.21 16 17 O -0.62 -34.12 13.91 -3.05 -0.04 -34.16 16 18 N -0.57 -28.98 5.29 -306.98 -1.62 -30.60 16 19 C -0.33 -18.85 9.68 84.04 0.81 -18.04 16 20 H 0.08 4.66 7.16 -2.91 -0.02 4.64 16 21 C -0.01 -0.56 5.50 84.93 0.47 -0.09 16 22 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.88 29.55 68.60 2.03 44.91 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 25 H -0.27 -11.03 7.11 99.48 0.71 -10.32 16 26 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 27 C -0.14 -1.36 5.30 30.69 0.16 -1.20 16 28 C 0.06 0.51 6.84 72.01 0.49 1.00 16 29 O -0.40 -5.77 9.94 -148.98 -1.48 -7.25 16 30 H 0.05 0.65 7.82 -2.39 -0.02 0.63 16 31 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 33 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.05 1.14 8.03 -2.39 -0.02 1.12 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.42 3.33 7.97 -92.71 -0.74 2.59 16 38 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.42 6.55 -2.39 -0.02 1.40 16 40 H 0.06 0.99 8.12 -2.39 -0.02 0.97 16 41 H 0.10 1.63 7.93 -2.39 -0.02 1.61 16 42 H 0.07 2.10 6.47 -2.39 -0.02 2.08 16 43 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 44 H 0.06 2.27 5.83 -2.38 -0.01 2.25 16 45 H 0.12 3.16 7.93 -2.39 -0.02 3.14 16 46 H 0.07 2.05 8.12 -2.39 -0.02 2.03 16 47 H 0.40 18.84 7.90 -92.71 -0.73 18.10 16 48 H 0.28 13.84 8.31 -92.71 -0.77 13.07 16 49 H 0.11 0.44 7.68 -2.39 -0.02 0.42 16 50 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 51 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 52 H 0.11 0.69 8.14 -2.38 -0.02 0.67 16 Total: -1.00 -76.95 414.28 -1.34 -78.29 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -0.55 Total: 31.34 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: 6.80 Total: 19.15 kcal Atomic # 7 Polarization: -105.95 SS G_CDS: -8.04 Total: -113.99 kcal Atomic # 8 Polarization: -58.13 SS G_CDS: -1.57 Total: -59.70 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 2.03 Total: 44.91 kcal Total: -76.95 -1.34 -78.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317465178.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.011 kcal (2) G-P(sol) polarization free energy of solvation -76.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds