Wall clock time and date at job start Wed Apr 1 2020 01:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.46969 * 2 1 4 4 N 1.46903 * 109.47290 * 174.88950 * 3 2 1 5 5 C 1.46900 * 110.99567 * 76.02474 * 4 3 2 6 6 C 1.53010 * 109.46966 * 199.54539 * 5 4 3 7 7 N 1.46495 * 109.47129 * 174.88835 * 6 5 4 8 8 C 1.34774 * 119.99947 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00025 * 0.02562 * 8 7 6 10 10 C 1.50698 * 120.00049 * 180.02562 * 8 7 6 11 11 H 1.09010 * 110.43636 * 300.70217 * 10 8 7 12 12 C 1.54104 * 110.48966 * 63.24578 * 10 8 7 13 13 O 1.43739 * 107.29379 * 116.64530 * 12 10 8 14 14 C 1.44390 * 106.97477 * 26.51701 * 13 12 10 15 15 H 1.08995 * 110.61716 * 78.43683 * 14 13 12 16 16 C 1.53002 * 110.61491 * 201.27995 * 14 13 12 17 17 C 1.54814 * 110.49019 * 178.15935 * 10 8 7 18 18 C 1.46892 * 111.00247 * 199.97996 * 4 3 2 19 19 C 1.50707 * 109.47212 * 66.04581 * 18 4 3 20 20 O 1.21290 * 119.99589 * 0.02562 * 19 18 4 21 21 N 1.34774 * 119.99915 * 179.97438 * 19 18 4 22 22 C 1.37104 * 119.99938 * 180.02562 * 21 19 18 23 23 H 1.07999 * 119.99443 * 0.02562 * 22 21 19 24 24 C 1.38943 * 119.99809 * 180.02562 * 22 21 19 25 25 N 1.31408 * 120.00501 * 359.97438 * 24 22 21 26 26 Si 1.86810 * 119.99726 * 179.97438 * 24 22 21 27 27 H 1.48496 * 109.46742 * 59.99915 * 26 24 22 28 28 H 1.48501 * 109.46777 * 179.97438 * 26 24 22 29 29 H 1.48495 * 109.46868 * 299.99944 * 26 24 22 30 30 H 1.09001 * 109.47274 * 179.97438 * 1 2 3 31 31 H 1.09008 * 109.47328 * 299.99659 * 1 2 3 32 32 H 1.08999 * 109.47690 * 59.99692 * 1 2 3 33 33 H 1.08997 * 109.46932 * 240.00530 * 2 1 3 34 34 H 1.08996 * 109.47127 * 119.99812 * 2 1 3 35 35 H 1.08999 * 109.46905 * 54.89521 * 3 2 1 36 36 H 1.09001 * 109.47476 * 294.89265 * 3 2 1 37 37 H 1.08991 * 109.47390 * 79.55147 * 5 4 3 38 38 H 1.08999 * 109.47407 * 319.54255 * 5 4 3 39 39 H 1.08998 * 109.46845 * 294.89166 * 6 5 4 40 40 H 1.09006 * 109.46993 * 54.88727 * 6 5 4 41 41 H 0.97008 * 120.00037 * 0.02562 * 7 6 5 42 42 H 1.09000 * 109.87960 * 236.07109 * 12 10 8 43 43 H 1.08995 * 109.87428 * 357.07303 * 12 10 8 44 44 H 1.08994 * 109.47085 * 58.54901 * 16 14 13 45 45 H 1.09008 * 109.46647 * 178.54539 * 16 14 13 46 46 H 1.08999 * 109.47401 * 298.54199 * 16 14 13 47 47 H 1.08997 * 110.90209 * 338.63790 * 17 10 8 48 48 H 1.08996 * 110.90917 * 102.23980 * 17 10 8 49 49 H 1.09004 * 109.46974 * 186.04348 * 18 4 3 50 50 H 1.08995 * 109.47385 * 306.04591 * 18 4 3 51 51 H 0.97003 * 120.00212 * 0.02562 * 21 19 18 52 52 H 0.97003 * 120.00637 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 3.5038 1.4445 0.1234 5 6 4.1396 1.0746 -1.1482 6 6 5.5752 0.6148 -0.8857 7 7 6.1690 0.1311 -2.1345 8 6 7.4366 -0.3267 -2.1449 9 8 8.0854 -0.3387 -1.1204 10 6 8.0477 -0.8238 -3.4296 11 1 7.4667 -1.6541 -3.8313 12 6 8.1401 0.3182 -4.4602 13 8 9.5345 0.5359 -4.7329 14 6 10.2137 -0.7126 -4.4787 15 1 10.0726 -1.4026 -5.3106 16 6 11.7036 -0.4736 -4.2257 17 6 9.5177 -1.2520 -3.2004 18 6 3.9906 2.7473 0.5960 19 6 3.5117 2.9812 2.0057 20 8 2.8321 2.1446 2.5620 21 7 3.8394 4.1196 2.6485 22 6 3.4042 4.3322 3.9312 23 1 2.7991 3.5872 4.4264 24 6 3.7416 5.5059 4.5937 25 7 4.4782 6.4121 3.9912 26 14 3.1480 5.7959 6.3410 27 1 3.6687 4.7224 7.2251 28 1 3.6407 7.1127 6.8190 29 1 1.6633 5.7828 6.3680 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8899 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 1.6038 1.9820 0.8407 36 1 1.7532 1.9293 -0.9322 37 1 4.1506 1.9377 -1.8135 38 1 3.5779 0.2644 -1.6132 39 1 6.1608 1.4515 -0.5050 40 1 5.5703 -0.1897 -0.1502 41 1 5.6502 0.1410 -2.9541 42 1 7.6233 0.0332 -5.3766 43 1 7.6944 1.2244 -4.0501 44 1 11.8246 0.1978 -3.3757 45 1 12.1926 -1.4238 -4.0108 46 1 12.1550 -0.0247 -5.1105 47 1 9.9256 -0.7795 -2.3069 48 1 9.6015 -2.3370 -3.1377 49 1 5.0804 2.7569 0.5762 50 1 3.6084 3.5352 -0.0529 51 1 4.3832 4.7885 2.2038 52 1 4.7141 7.2314 4.4538 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317543757.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:35 Heat of formation + Delta-G solvation = -124.027381 kcal Electronic energy + Delta-G solvation = -29968.870702 eV Core-core repulsion = 25775.104301 eV Total energy + Delta-G solvation = -4193.766400 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.71113 -39.07383 -38.61564 -36.97087 -34.99774 -33.84267 -33.09580 -32.68651 -32.14255 -31.19649 -29.25690 -27.53046 -26.43956 -25.02769 -24.32493 -23.08196 -21.85360 -21.55252 -20.81202 -20.09491 -19.15498 -17.85217 -17.59313 -17.07066 -16.55899 -16.09903 -15.86746 -15.56655 -15.27591 -14.98011 -14.80064 -14.54687 -14.31916 -14.03324 -13.85657 -13.66936 -13.52465 -13.44368 -13.04098 -12.74667 -12.59368 -12.43558 -12.21262 -12.08350 -11.76422 -11.68855 -11.59478 -11.50981 -11.47140 -11.43192 -11.26497 -11.13097 -10.94150 -10.62125 -10.42842 -10.33269 -10.25633 -10.19430 -9.84419 -9.44083 -9.22196 -8.42978 -7.98635 -7.91008 -6.39583 -3.80431 2.39189 2.82569 3.21485 3.27195 3.31493 3.42462 3.90884 3.94536 4.00275 4.23435 4.34447 4.45572 4.58466 4.71906 4.78780 4.84877 4.97098 5.01695 5.06119 5.16249 5.20222 5.22035 5.25945 5.34860 5.35286 5.41284 5.43619 5.56312 5.59511 5.65703 5.67989 5.77773 5.85575 5.87151 5.90323 5.99365 6.00577 6.06085 6.22949 6.27168 6.29914 6.48668 6.51750 6.55821 7.22739 7.24877 7.35198 7.56891 8.00115 8.07864 8.63529 9.19896 9.56333 10.07904 10.78111 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010581 B = 0.002227 C = 0.001917 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2645.573328 B =12568.355999 C =14604.869415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C 0.058 3.942 4 N -0.512 5.512 5 C 0.044 3.956 6 C 0.120 3.880 7 N -0.728 5.728 8 C 0.521 3.479 9 O -0.528 6.528 10 C -0.148 4.148 11 H 0.110 0.890 12 C 0.059 3.941 13 O -0.370 6.370 14 C 0.071 3.929 15 H 0.071 0.929 16 C -0.147 4.147 17 C -0.136 4.136 18 C 0.042 3.958 19 C 0.443 3.557 20 O -0.575 6.575 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.098 0.902 36 H 0.022 0.978 37 H 0.039 0.961 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.398 0.602 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.066 0.934 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.100 0.900 48 H 0.085 0.915 49 H 0.089 0.911 50 H 0.048 0.952 51 H 0.392 0.608 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.346 -13.593 -21.515 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.070 4.070 4 N -0.236 5.236 5 C -0.084 4.084 6 C -0.004 4.004 7 N -0.380 5.380 8 C 0.306 3.694 9 O -0.403 6.403 10 C -0.170 4.170 11 H 0.128 0.872 12 C -0.018 4.018 13 O -0.289 6.289 14 C 0.014 3.986 15 H 0.089 0.911 16 C -0.205 4.205 17 C -0.174 4.174 18 C -0.089 4.089 19 C 0.229 3.771 20 O -0.459 6.459 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.041 0.959 37 H 0.057 0.943 38 H 0.098 0.902 39 H 0.088 0.912 40 H 0.099 0.901 41 H 0.232 0.768 42 H 0.087 0.913 43 H 0.106 0.894 44 H 0.085 0.915 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.118 0.882 48 H 0.103 0.897 49 H 0.107 0.893 50 H 0.066 0.934 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.645 -14.110 -20.005 25.123 hybrid contribution -0.584 1.096 -0.380 1.299 sum 5.061 -13.014 -20.385 24.709 Atomic orbital electron populations 1.21718 0.96092 1.01169 1.01738 1.21424 0.94918 0.96712 1.01942 1.22251 0.86359 0.97584 1.00783 1.61407 1.06575 1.29461 1.26172 1.22258 0.94365 1.00125 0.91699 1.21389 0.92939 1.00453 0.85572 1.45939 1.14122 1.65388 1.12600 1.20226 0.81454 0.77470 0.90276 1.90739 1.60975 1.54325 1.34303 1.22756 0.99199 1.00166 0.94838 0.87161 1.23087 0.84367 0.97782 0.96606 1.88923 1.18295 1.32636 1.89076 1.23234 0.93802 0.85745 0.95864 0.91121 1.21774 0.93053 1.02686 1.02940 1.23231 0.91898 1.02301 1.00005 1.21947 1.00875 0.89820 0.96250 1.19687 0.85929 0.83859 0.87667 1.90508 1.42212 1.45048 1.68168 1.41868 1.47065 1.16888 1.14269 1.19637 1.30264 1.03436 0.89458 0.87962 1.25256 0.96922 0.95545 1.00220 1.69601 1.37253 1.09088 1.38398 0.85928 0.79024 0.77433 0.81892 1.19878 1.21000 1.19947 0.93021 0.92283 0.93387 0.93267 0.90702 0.88358 0.95938 0.94308 0.90240 0.91156 0.90097 0.76830 0.91299 0.89404 0.91455 0.90930 0.91741 0.88185 0.89673 0.89303 0.93402 0.77521 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 37.15 0.37 -1.40 16 2 C -0.11 -1.50 5.98 -26.73 -0.16 -1.66 16 3 C 0.06 0.89 4.46 -3.82 -0.02 0.87 16 4 N -0.51 -8.07 4.10 -236.07 -0.97 -9.04 16 5 C 0.04 0.51 4.92 -3.82 -0.02 0.49 16 6 C 0.12 1.47 5.71 -4.04 -0.02 1.44 16 7 N -0.73 -6.81 5.46 -60.29 -0.33 -7.14 16 8 C 0.52 5.82 6.95 -10.99 -0.08 5.75 16 9 O -0.53 -8.40 15.45 5.56 0.09 -8.32 16 10 C -0.15 -1.13 3.43 -90.24 -0.31 -1.44 16 11 H 0.11 0.55 8.14 -51.92 -0.42 0.13 16 12 C 0.06 0.44 7.33 37.73 0.28 0.72 16 13 O -0.37 -3.70 11.23 -35.23 -0.40 -4.09 16 14 C 0.07 0.54 3.97 -25.55 -0.10 0.44 16 15 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 16 C -0.15 -1.01 9.67 37.16 0.36 -0.66 16 17 C -0.14 -1.13 5.97 -24.60 -0.15 -1.27 16 18 C 0.04 0.74 5.28 -4.98 -0.03 0.72 16 19 C 0.44 10.37 7.29 -10.98 -0.08 10.29 16 20 O -0.58 -15.21 14.12 5.55 0.08 -15.14 16 21 N -0.56 -14.33 5.29 -10.96 -0.06 -14.39 16 22 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 23 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.76 13.05 55.50 0.72 -24.04 16 26 Si 0.93 21.24 29.55 -169.99 -5.02 16.21 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 29 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 30 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.77 8.14 -51.92 -0.42 0.35 16 32 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.05 0.56 6.91 -51.93 -0.36 0.20 16 34 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 35 H 0.10 1.88 5.85 -51.93 -0.30 1.58 16 36 H 0.02 0.31 8.00 -51.93 -0.42 -0.11 16 37 H 0.04 0.40 8.00 -51.93 -0.42 -0.01 16 38 H 0.08 0.78 6.58 -51.93 -0.34 0.44 16 39 H 0.07 0.99 6.95 -51.93 -0.36 0.63 16 40 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 41 H 0.40 2.36 8.47 -40.82 -0.35 2.01 16 42 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 43 H 0.09 0.68 7.63 -51.93 -0.40 0.28 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.37 8.14 -51.92 -0.42 -0.05 16 46 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 47 H 0.10 1.09 6.82 -51.93 -0.35 0.74 16 48 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 49 H 0.09 1.47 6.71 -51.93 -0.35 1.12 16 50 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 51 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 52 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 LS Contribution 416.72 15.07 6.28 6.28 Total: -1.00 -34.02 416.72 -8.77 -42.79 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: -8.97 Total: 10.57 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: -0.20 Total: 6.30 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.63 Total: -54.60 kcal Atomic # 8 Polarization: -27.32 SS G_CDS: -0.23 Total: -27.55 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 6.28 Total: 6.28 kcal Total: -34.02 -8.77 -42.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543757.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.241 kcal (2) G-P(sol) polarization free energy of solvation -34.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds