Wall clock time and date at job start Wed Apr 1 2020 01:18:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53008 * 109.46911 * 2 1 4 4 N 1.46900 * 109.47026 * 179.97438 * 3 2 1 5 5 C 1.46898 * 110.99850 * 59.16146 * 4 3 2 6 6 C 1.52999 * 109.46827 * 66.04931 * 5 4 3 7 7 N 1.46505 * 109.46777 * 179.97438 * 6 5 4 8 8 C 1.34777 * 119.99640 * 179.97438 * 7 6 5 9 9 O 1.21273 * 120.00607 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.99648 * 179.97438 * 8 7 6 11 11 H 1.09000 * 110.45860 * 57.40025 * 10 8 7 12 12 C 1.54478 * 110.51376 * 294.64529 * 10 8 7 13 13 O 1.44425 * 104.80270 * 217.37635 * 12 10 8 14 14 C 1.44419 * 105.27506 * 40.51270 * 13 12 10 15 15 H 1.09001 * 110.37793 * 78.32080 * 14 13 12 16 16 C 1.53008 * 110.37431 * 200.65477 * 14 13 12 17 17 C 1.54481 * 104.80662 * 319.48562 * 14 13 12 18 18 C 1.46903 * 110.99812 * 295.20815 * 4 3 2 19 19 C 1.50704 * 109.47048 * 288.23888 * 18 4 3 20 20 O 1.21288 * 119.99962 * 354.30476 * 19 18 4 21 21 N 1.34772 * 119.99778 * 174.30028 * 19 18 4 22 22 C 1.37096 * 120.00360 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99471 * 0.02562 * 22 21 19 24 24 C 1.38950 * 120.00597 * 180.02562 * 22 21 19 25 25 N 1.31407 * 119.99883 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99798 * 359.97438 * 24 22 21 27 27 H 1.48501 * 109.47261 * 90.00131 * 26 24 22 28 28 H 1.48497 * 109.47165 * 210.00461 * 26 24 22 29 29 H 1.48498 * 109.47118 * 330.00444 * 26 24 22 30 30 H 1.09000 * 109.46640 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47281 * 299.99623 * 1 2 3 32 32 H 1.09003 * 109.47259 * 59.99929 * 1 2 3 33 33 H 1.08994 * 109.47505 * 240.00172 * 2 1 3 34 34 H 1.08997 * 109.47450 * 119.99646 * 2 1 3 35 35 H 1.09010 * 109.46865 * 59.93407 * 3 2 1 36 36 H 1.09003 * 109.47048 * 299.93841 * 3 2 1 37 37 H 1.08992 * 109.47402 * 306.04328 * 5 4 3 38 38 H 1.09001 * 109.46420 * 186.04217 * 5 4 3 39 39 H 1.09001 * 109.47037 * 299.98908 * 6 5 4 40 40 H 1.08992 * 109.47622 * 59.99531 * 6 5 4 41 41 H 0.96992 * 120.00255 * 359.97438 * 7 6 5 42 42 H 1.08996 * 110.37303 * 336.20757 * 12 10 8 43 43 H 1.08996 * 110.37270 * 98.54375 * 12 10 8 44 44 H 1.08998 * 109.47430 * 175.37847 * 16 14 13 45 45 H 1.09002 * 109.46994 * 295.38268 * 16 14 13 46 46 H 1.09004 * 109.46441 * 55.38067 * 16 14 13 47 47 H 1.09001 * 110.51132 * 265.33963 * 17 14 13 48 48 H 1.08992 * 110.51504 * 142.62028 * 17 14 13 49 49 H 1.08995 * 109.47068 * 48.24055 * 18 4 3 50 50 H 1.09003 * 109.46768 * 168.24314 * 18 4 3 51 51 H 0.97004 * 120.00167 * 0.02562 * 21 19 18 52 52 H 0.97008 * 119.99623 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 3.5090 1.4426 0.0006 5 6 4.0359 0.7394 -1.1766 6 6 3.6725 1.5195 -2.4416 7 7 4.1985 0.8186 -3.6156 8 6 3.9977 1.3246 -4.8485 9 8 3.3821 2.3603 -4.9862 10 6 4.5393 0.6038 -6.0561 11 1 4.1515 -0.4140 -6.0980 12 6 6.0840 0.5972 -6.0350 13 8 6.4726 0.7603 -7.4164 14 6 5.5572 1.7383 -7.9562 15 1 5.8512 2.7425 -7.6508 16 6 5.5087 1.6373 -9.4821 17 6 4.1848 1.3718 -7.3491 18 6 4.0349 0.8587 1.2418 19 6 3.7992 1.8122 2.3848 20 8 3.3422 2.9150 2.1702 21 7 4.0963 1.4395 3.6454 22 6 3.8815 2.3066 4.6854 23 1 3.4738 3.2883 4.4943 24 6 4.1882 1.9225 5.9850 25 7 3.9817 2.7536 6.9817 26 14 4.8927 0.2243 6.3154 27 1 6.3750 0.2814 6.2471 28 1 4.4765 -0.2299 7.6666 29 1 4.3865 -0.7286 5.2952 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8900 35 1 1.6756 1.9568 0.8895 36 1 1.6775 1.9561 -0.8906 37 1 3.6017 -0.2589 -1.2280 38 1 5.1202 0.6605 -1.0974 39 1 2.5882 1.5985 -2.5208 40 1 4.1067 2.5179 -2.3902 41 1 4.6912 -0.0096 -3.5055 42 1 6.4588 1.4263 -5.4349 43 1 6.4541 -0.3514 -5.6462 44 1 4.7549 2.3235 -9.8680 45 1 6.4832 1.8986 -9.8947 46 1 5.2535 0.6176 -9.7707 47 1 3.6238 0.7328 -8.0312 48 1 3.6179 2.2727 -7.1149 49 1 3.5261 -0.0837 1.4440 50 1 5.1045 0.6783 1.1337 51 1 4.4621 0.5576 3.8170 52 1 4.1963 2.4856 7.8891 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317543758.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:18:38 Heat of formation + Delta-G solvation = -113.824522 kcal Electronic energy + Delta-G solvation = -29997.970865 eV Core-core repulsion = 25804.646894 eV Total energy + Delta-G solvation = -4193.323971 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81648 -39.33937 -38.78292 -37.36620 -35.07488 -33.92326 -32.89082 -32.70456 -32.20663 -31.65706 -29.60357 -27.39317 -26.44107 -25.41607 -24.17767 -23.17619 -22.69535 -21.70332 -20.60411 -20.00794 -19.23926 -18.18539 -17.97150 -16.73800 -16.35320 -16.16732 -16.02831 -15.83092 -15.58753 -15.53326 -14.92705 -14.88860 -14.45620 -13.92447 -13.85787 -13.59663 -13.53174 -13.27613 -13.21441 -12.90505 -12.75884 -12.57481 -12.44532 -12.30175 -12.00106 -11.83233 -11.71774 -11.66612 -11.56085 -11.41763 -11.29766 -11.23752 -11.22010 -11.06525 -10.61178 -10.39722 -10.24279 -10.14156 -9.97990 -9.54705 -9.33606 -8.60806 -8.17825 -7.98522 -6.31094 -3.82405 2.27323 2.70726 3.00437 3.05214 3.13693 3.41995 3.74550 3.92211 3.95303 4.09484 4.24469 4.36843 4.52316 4.64901 4.72393 4.76129 4.80901 4.86917 4.95327 4.97613 5.08685 5.11589 5.19551 5.20940 5.25927 5.28652 5.32700 5.42720 5.44809 5.55984 5.59625 5.61161 5.68745 5.72108 5.75767 5.78877 5.87512 5.92692 5.94327 6.09847 6.12873 6.20738 6.35999 6.45361 7.04304 7.14463 7.19223 7.58332 7.87629 8.14741 8.60607 8.95827 9.42645 9.84333 10.82135 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.019262 B = 0.001892 C = 0.001818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1453.322333 B =14792.299098 C =15398.525811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.166 4.166 3 C 0.050 3.950 4 N -0.507 5.507 5 C 0.040 3.960 6 C 0.121 3.879 7 N -0.727 5.727 8 C 0.520 3.480 9 O -0.531 6.531 10 C -0.146 4.146 11 H 0.110 0.890 12 C 0.059 3.941 13 O -0.369 6.369 14 C 0.068 3.932 15 H 0.072 0.928 16 C -0.146 4.146 17 C -0.142 4.142 18 C 0.040 3.960 19 C 0.453 3.547 20 O -0.555 6.555 21 N -0.593 5.593 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.882 5.882 26 Si 0.879 3.121 27 H -0.271 1.271 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.050 0.950 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.064 0.936 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.043 0.957 38 H 0.079 0.921 39 H 0.071 0.929 40 H 0.080 0.920 41 H 0.399 0.601 42 H 0.066 0.934 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.063 0.937 46 H 0.064 0.936 47 H 0.081 0.919 48 H 0.102 0.898 49 H 0.054 0.946 50 H 0.089 0.911 51 H 0.369 0.631 52 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.782 -11.908 -27.274 29.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.205 4.205 3 C -0.077 4.077 4 N -0.229 5.229 5 C -0.089 4.089 6 C -0.003 4.003 7 N -0.378 5.378 8 C 0.306 3.694 9 O -0.407 6.407 10 C -0.168 4.168 11 H 0.128 0.872 12 C -0.019 4.019 13 O -0.288 6.288 14 C 0.011 3.989 15 H 0.090 0.910 16 C -0.203 4.203 17 C -0.180 4.180 18 C -0.092 4.092 19 C 0.239 3.761 20 O -0.436 6.436 21 N -0.233 5.233 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.069 0.931 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.097 0.903 39 H 0.090 0.910 40 H 0.099 0.901 41 H 0.233 0.767 42 H 0.084 0.916 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.083 0.917 47 H 0.100 0.900 48 H 0.121 0.879 49 H 0.072 0.928 50 H 0.107 0.893 51 H 0.202 0.798 52 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 1.366 -9.931 -27.403 29.179 hybrid contribution 0.399 -2.633 0.888 2.808 sum 1.764 -12.564 -26.515 29.394 Atomic orbital electron populations 1.21650 0.95303 1.01302 1.02144 1.22222 0.97036 0.99624 1.01598 1.22402 0.86211 0.94805 1.04323 1.61654 1.08136 1.53109 1.00028 1.22292 1.00635 0.95619 0.90349 1.21361 0.99670 0.96668 0.82581 1.45934 1.57834 1.27876 1.06198 1.20269 0.79771 0.85291 0.84115 1.90715 1.40652 1.23566 1.85785 1.22724 0.98070 1.01676 0.94327 0.87217 1.23316 0.90921 1.02758 0.84906 1.89150 1.55029 1.61475 1.23112 1.23070 0.88022 0.92739 0.95080 0.90985 1.21804 1.02725 1.02890 0.92918 1.23041 0.98347 1.02262 0.94352 1.21964 1.00744 0.96191 0.90269 1.19616 0.84574 0.88914 0.83028 1.90567 1.47444 1.22062 1.83549 1.42213 1.58933 1.15723 1.06448 1.19421 1.40535 0.99087 0.84178 0.86281 1.25028 0.97854 0.97973 0.95321 1.69622 1.47480 1.35415 0.99685 0.86683 0.79992 0.84038 0.78711 1.19642 1.20227 1.19611 0.93108 0.92244 0.92808 0.92262 0.91783 0.88639 0.90747 0.93881 0.90294 0.91045 0.90121 0.76686 0.91601 0.88195 0.90903 0.91783 0.91714 0.90020 0.87942 0.92790 0.89280 0.79839 0.91651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.60 9.91 37.16 0.37 -1.23 16 2 C -0.17 -1.95 5.29 -26.73 -0.14 -2.09 16 3 C 0.05 0.73 4.80 -3.82 -0.02 0.71 16 4 N -0.51 -7.42 4.31 -236.06 -1.02 -8.44 16 5 C 0.04 0.41 4.81 -3.83 -0.02 0.39 16 6 C 0.12 1.29 5.60 -4.04 -0.02 1.26 16 7 N -0.73 -5.87 5.55 -60.29 -0.33 -6.20 16 8 C 0.52 5.08 7.01 -10.98 -0.08 5.01 16 9 O -0.53 -7.46 15.28 5.56 0.09 -7.37 16 10 C -0.15 -1.02 3.51 -90.20 -0.32 -1.34 16 11 H 0.11 0.55 8.14 -51.93 -0.42 0.12 16 12 C 0.06 0.39 7.17 37.93 0.27 0.67 16 13 O -0.37 -3.27 11.34 -35.23 -0.40 -3.67 16 14 C 0.07 0.52 3.92 -25.95 -0.10 0.42 16 15 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 16 C -0.15 -0.86 9.52 37.16 0.35 -0.50 16 17 C -0.14 -1.07 6.22 -25.16 -0.16 -1.22 16 18 C 0.04 0.62 5.34 -4.97 -0.03 0.60 16 19 C 0.45 10.00 7.36 -10.99 -0.08 9.92 16 20 O -0.56 -14.62 14.70 5.55 0.08 -14.54 16 21 N -0.59 -13.83 5.09 -10.96 -0.06 -13.88 16 22 C -0.30 -8.49 10.16 -14.93 -0.15 -8.64 16 23 H 0.12 3.82 7.39 -52.49 -0.39 3.44 16 24 C 0.04 1.11 5.50 -17.47 -0.10 1.02 16 25 N -0.88 -25.64 13.96 55.50 0.77 -24.86 16 26 Si 0.88 19.12 27.74 -169.99 -4.71 14.41 16 27 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 28 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.33 6.52 56.52 0.37 -4.96 16 30 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.60 6.26 -51.93 -0.33 0.28 16 34 H 0.06 0.80 6.29 -51.93 -0.33 0.48 16 35 H 0.10 1.73 6.54 -51.92 -0.34 1.39 16 36 H 0.07 1.02 6.51 -51.93 -0.34 0.68 16 37 H 0.04 0.38 5.97 -51.93 -0.31 0.07 16 38 H 0.08 0.72 7.86 -51.93 -0.41 0.32 16 39 H 0.07 0.85 6.57 -51.93 -0.34 0.50 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.40 1.98 8.47 -40.82 -0.35 1.63 16 42 H 0.07 0.48 7.86 -51.93 -0.41 0.07 16 43 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.08 0.50 7.87 -51.93 -0.41 0.10 16 48 H 0.10 0.95 6.50 -51.93 -0.34 0.61 16 49 H 0.05 0.75 5.97 -51.93 -0.31 0.44 16 50 H 0.09 1.20 7.81 -51.93 -0.41 0.80 16 51 H 0.37 7.53 5.76 -40.82 -0.24 7.29 16 52 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 408.18 15.07 6.15 6.15 Total: -1.00 -34.88 408.18 -8.27 -43.15 By element: Atomic # 1 Polarization: 18.91 SS G_CDS: -8.62 Total: 10.29 kcal Atomic # 6 Polarization: 5.18 SS G_CDS: -0.21 Total: 4.97 kcal Atomic # 7 Polarization: -52.75 SS G_CDS: -0.63 Total: -53.38 kcal Atomic # 8 Polarization: -25.35 SS G_CDS: -0.23 Total: -25.58 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -4.71 Total: 14.41 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.88 -8.27 -43.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317543758.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.678 kcal (2) G-P(sol) polarization free energy of solvation -34.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.267 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.825 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds