Wall clock time and date at job start Wed Apr 1 2020 00:56:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47152 * 2 1 4 4 H 1.09006 * 109.46873 * 54.99741 * 3 2 1 5 5 O 1.42903 * 109.47098 * 295.00088 * 3 2 1 6 6 C 1.42899 * 114.00146 * 149.99915 * 5 3 2 7 7 C 1.50696 * 109.47160 * 174.99757 * 3 2 1 8 8 O 1.21288 * 119.99939 * 115.00365 * 7 3 2 9 9 N 1.34777 * 119.99900 * 294.99932 * 7 3 2 10 10 C 1.46504 * 119.99671 * 174.97012 * 9 7 3 11 11 C 1.52998 * 110.01609 * 301.34222 * 10 9 7 12 12 N 1.46896 * 109.47092 * 304.19940 * 11 10 9 13 13 C 1.46903 * 111.00152 * 174.64958 * 12 11 10 14 14 C 1.50703 * 109.47038 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00323 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99641 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00021 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99589 * 359.97438 * 17 16 14 19 19 C 1.38941 * 120.00314 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00245 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47052 * 89.99534 * 21 19 17 23 23 H 1.48497 * 109.47387 * 210.00068 * 21 19 17 24 24 H 1.48502 * 109.47228 * 329.99883 * 21 19 17 25 25 C 1.54268 * 110.07240 * 62.75937 * 10 9 7 26 26 C 1.54889 * 104.19693 * 95.69664 * 25 10 9 27 27 C 1.54890 * 102.74746 * 37.94385 * 26 25 10 28 28 C 1.53877 * 110.03222 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.47442 * 299.99953 * 1 2 3 30 30 H 1.08993 * 109.47003 * 60.00213 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47484 * 239.99578 * 2 1 3 33 33 H 1.09002 * 109.46777 * 119.99766 * 2 1 3 34 34 H 1.09000 * 109.47151 * 59.99463 * 6 5 3 35 35 H 1.08998 * 109.46933 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47007 * 300.00327 * 6 5 3 37 37 H 0.96995 * 120.00597 * 354.96650 * 9 7 3 38 38 H 1.09003 * 109.47106 * 184.20476 * 11 10 9 39 39 H 1.08997 * 109.47632 * 64.20495 * 11 10 9 40 40 H 1.00896 * 111.00440 * 298.61044 * 12 11 10 41 41 H 1.08997 * 109.47204 * 300.00807 * 13 12 11 42 42 H 1.09006 * 109.46664 * 60.00198 * 13 12 11 43 43 H 0.97000 * 119.99992 * 359.97438 * 16 14 13 44 44 H 0.97003 * 120.00099 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.48395 * 214.37386 * 25 10 9 46 46 H 1.08996 * 110.48923 * 337.01527 * 25 10 9 47 47 H 1.08997 * 110.75832 * 279.62682 * 26 25 10 48 48 H 1.09003 * 110.75775 * 156.25515 * 26 25 10 49 49 H 1.08997 * 110.48678 * 203.38221 * 27 26 25 50 50 H 1.08993 * 110.49096 * 80.73694 * 27 26 25 51 51 H 1.09001 * 110.02647 * 359.95256 * 28 10 9 52 52 H 1.08997 * 110.03415 * 121.38259 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 1.4559 3.4903 -1.1003 7 6 3.5419 1.4443 0.1239 8 8 4.2250 1.8611 -0.7875 9 7 4.1259 0.9828 1.2475 10 6 5.5853 0.8815 1.3258 11 6 6.1071 -0.0334 0.2161 12 7 5.4453 -1.3416 0.3084 13 6 5.8268 -2.2052 -0.8171 14 6 5.1294 -3.5350 -0.6888 15 8 4.3873 -3.7428 0.2477 16 7 5.3305 -4.4934 -1.6149 17 6 4.6958 -5.7030 -1.4985 18 1 4.0349 -5.8880 -0.6645 19 6 4.9026 -6.6909 -2.4534 20 7 4.2946 -7.8505 -2.3415 21 14 6.0462 -6.3712 -3.8954 22 1 7.4268 -6.7808 -3.5326 23 1 5.5904 -7.1545 -5.0718 24 1 6.0306 -4.9241 -4.2282 25 6 6.2208 2.2814 1.1990 26 6 6.4448 2.7311 2.6642 27 6 6.8769 1.4178 3.3625 28 6 6.0024 0.3317 2.7012 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3768 3.9644 -0.7609 35 1 1.1723 3.9004 -2.0696 36 1 0.6618 3.6808 -0.3783 37 1 3.5800 0.7178 2.0042 38 1 7.1837 -0.1623 0.3276 39 1 5.8934 0.4142 -0.7545 40 1 5.6469 -1.7875 1.1907 41 1 5.5348 -1.7311 -1.7542 42 1 6.9060 -2.3581 -0.8082 43 1 5.9238 -4.3271 -2.3641 44 1 4.4393 -8.5403 -3.0080 45 1 7.1713 2.2223 0.6686 46 1 5.5408 2.9645 0.6901 47 1 5.5199 3.1124 3.0969 48 1 7.2365 3.4780 2.7224 49 1 6.6756 1.4704 4.4324 50 1 7.9332 1.2191 3.1815 51 1 5.1190 0.1412 3.3106 52 1 6.5766 -0.5865 2.5778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001318625826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:28 Heat of formation + Delta-G solvation = -121.818844 kcal Electronic energy + Delta-G solvation = -31747.108772 eV Core-core repulsion = 27553.438141 eV Total energy + Delta-G solvation = -4193.670631 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.64031 -38.83430 -38.28264 -36.96533 -35.05683 -34.03731 -33.81020 -32.95142 -31.62700 -29.62273 -29.01981 -27.80091 -26.68044 -25.85454 -24.31636 -22.94214 -22.24531 -21.19019 -20.27464 -19.51101 -19.23281 -18.32213 -17.55614 -17.01638 -16.53814 -15.79199 -15.63745 -15.52105 -15.23336 -14.92470 -14.77279 -14.26867 -14.17679 -13.94092 -13.91997 -13.57556 -13.41802 -13.25817 -13.05406 -12.78989 -12.52953 -12.20607 -12.06388 -12.05647 -11.78518 -11.66105 -11.60195 -11.40548 -11.34665 -11.23990 -11.13018 -11.06933 -10.85722 -10.80132 -10.71613 -10.56190 -10.46511 -9.95069 -9.53824 -9.14181 -8.91706 -8.51676 -8.15688 -8.04959 -6.28621 -3.79658 2.68401 3.06633 3.09830 3.11270 3.17849 3.71617 3.78731 4.07613 4.13558 4.33091 4.42966 4.65795 4.71708 4.79331 4.88514 4.94470 5.11041 5.15213 5.19337 5.21348 5.25878 5.29235 5.30361 5.38413 5.46997 5.50621 5.54393 5.55731 5.63175 5.66041 5.73348 5.74636 5.78702 5.84264 5.89451 6.00645 6.02627 6.03627 6.07354 6.12650 6.19334 6.34586 6.62856 6.94232 7.15375 7.59836 7.61345 7.67056 8.17281 8.34689 8.63013 8.97739 9.45790 9.86361 10.84552 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.003301 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.875123 B = 8479.396388 C =10082.178355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.113 4.113 3 C 0.076 3.924 4 H 0.078 0.922 5 O -0.355 6.355 6 C 0.031 3.969 7 C 0.502 3.498 8 O -0.529 6.529 9 N -0.702 5.702 10 C 0.184 3.816 11 C 0.048 3.952 12 N -0.660 5.660 13 C 0.049 3.951 14 C 0.453 3.547 15 O -0.565 6.565 16 N -0.592 5.592 17 C -0.303 4.303 18 H 0.119 0.881 19 C 0.041 3.959 20 N -0.883 5.883 21 Si 0.878 3.122 22 H -0.271 1.271 23 H -0.276 1.276 24 H -0.269 1.269 25 C -0.124 4.124 26 C -0.124 4.124 27 C -0.123 4.123 28 C -0.126 4.126 29 H 0.049 0.951 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.082 0.918 33 H 0.086 0.914 34 H 0.042 0.958 35 H 0.087 0.913 36 H 0.039 0.961 37 H 0.397 0.603 38 H 0.032 0.968 39 H 0.091 0.909 40 H 0.345 0.655 41 H 0.086 0.914 42 H 0.042 0.958 43 H 0.370 0.630 44 H 0.273 0.727 45 H 0.072 0.928 46 H 0.078 0.922 47 H 0.065 0.935 48 H 0.065 0.935 49 H 0.067 0.933 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.087 23.982 9.143 25.689 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.151 4.151 3 C 0.014 3.986 4 H 0.096 0.904 5 O -0.271 6.271 6 C -0.066 4.066 7 C 0.287 3.713 8 O -0.405 6.405 9 N -0.355 5.355 10 C 0.097 3.903 11 C -0.082 4.082 12 N -0.292 5.292 13 C -0.084 4.084 14 C 0.238 3.762 15 O -0.447 6.447 16 N -0.231 5.231 17 C -0.432 4.432 18 H 0.137 0.863 19 C -0.161 4.161 20 N -0.523 5.523 21 Si 0.705 3.295 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.194 1.194 25 C -0.163 4.163 26 C -0.162 4.162 27 C -0.161 4.161 28 C -0.164 4.164 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.060 0.940 35 H 0.105 0.895 36 H 0.057 0.943 37 H 0.232 0.768 38 H 0.050 0.950 39 H 0.109 0.891 40 H 0.164 0.836 41 H 0.104 0.896 42 H 0.060 0.940 43 H 0.203 0.797 44 H 0.083 0.917 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.084 0.916 49 H 0.085 0.915 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 0.416 24.007 8.529 25.481 hybrid contribution 1.623 -0.224 -0.504 1.714 sum 2.039 23.783 8.025 25.183 Atomic orbital electron populations 1.21718 0.94878 1.02284 1.01642 1.21542 0.96647 0.92087 1.04784 1.22158 0.91043 0.96715 0.88639 0.90432 1.88032 1.88082 1.20391 1.30632 1.22810 0.99394 0.81917 1.02469 1.21172 0.90969 0.77003 0.82117 1.90644 1.64905 1.46031 1.38871 1.45924 1.06521 1.66301 1.16743 1.20909 0.80115 0.94470 0.94773 1.22435 0.94974 0.90193 1.00612 1.59945 1.61408 1.02640 1.05214 1.21691 0.97266 0.93477 0.95946 1.19705 0.86304 0.85158 0.84986 1.90541 1.39911 1.80817 1.33417 1.42218 1.43192 1.14094 1.23599 1.19416 1.24740 0.87624 1.11433 0.86313 1.25022 0.97782 0.95328 0.97994 1.69620 1.42297 1.04459 1.35892 0.86688 0.81409 0.78537 0.82890 1.19698 1.20163 1.19430 1.22690 1.01179 0.95864 0.96594 1.22509 1.00993 0.97131 0.95551 1.22371 0.99658 0.94581 0.99494 1.22470 1.00458 0.98910 0.94578 0.93223 0.92130 0.91958 0.89958 0.89545 0.93979 0.89495 0.94253 0.76809 0.94990 0.89067 0.83565 0.89605 0.94047 0.79718 0.91658 0.90918 0.90316 0.91668 0.91597 0.91457 0.91445 0.90667 0.90658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 9.81 37.16 0.36 -1.22 16 2 C -0.11 -1.40 5.61 -26.73 -0.15 -1.55 16 3 C 0.08 0.88 2.52 -27.88 -0.07 0.81 16 4 H 0.08 0.68 7.79 -51.93 -0.40 0.27 16 5 O -0.35 -4.70 9.42 -55.09 -0.52 -5.22 16 6 C 0.03 0.30 10.81 101.05 1.09 1.39 16 7 C 0.50 6.58 6.35 -10.99 -0.07 6.51 16 8 O -0.53 -8.67 13.29 -14.31 -0.19 -8.86 16 9 N -0.70 -7.53 4.78 -46.57 -0.22 -7.76 16 10 C 0.18 1.95 0.68 -130.70 -0.09 1.86 16 11 C 0.05 0.63 4.05 -3.83 -0.02 0.62 16 12 N -0.66 -10.25 5.84 -115.06 -0.67 -10.92 16 13 C 0.05 0.86 6.16 -4.97 -0.03 0.83 16 14 C 0.45 10.40 7.82 -10.98 -0.09 10.31 16 15 O -0.56 -14.93 15.78 5.55 0.09 -14.84 16 16 N -0.59 -14.38 5.09 -10.96 -0.06 -14.44 16 17 C -0.30 -8.67 10.16 -14.94 -0.15 -8.83 16 18 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 19 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 20 N -0.88 -26.03 13.96 55.49 0.77 -25.25 16 21 Si 0.88 19.81 27.74 -169.99 -4.71 15.10 16 22 H -0.27 -5.98 7.11 56.52 0.40 -5.57 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 24 H -0.27 -5.62 6.52 56.52 0.37 -5.25 16 25 C -0.12 -1.24 5.59 -25.07 -0.14 -1.38 16 26 C -0.12 -0.96 6.91 -24.74 -0.17 -1.13 16 27 C -0.12 -0.91 6.83 -25.04 -0.17 -1.08 16 28 C -0.13 -1.11 5.82 -25.58 -0.15 -1.26 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.67 7.82 -51.93 -0.41 0.26 16 31 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.08 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.09 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.04 0.30 8.08 -51.93 -0.42 -0.12 16 37 H 0.40 3.46 7.95 -40.82 -0.32 3.14 16 38 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 1.42 6.41 -51.93 -0.33 1.09 16 40 H 0.34 5.36 7.15 -39.29 -0.28 5.08 16 41 H 0.09 1.48 8.14 -51.93 -0.42 1.05 16 42 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.37 8.03 5.76 -40.82 -0.24 7.80 16 44 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 45 H 0.07 0.73 7.85 -51.93 -0.41 0.32 16 46 H 0.08 0.93 6.43 -51.93 -0.33 0.60 16 47 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 48 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 50 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 51 H 0.07 0.61 7.44 -51.93 -0.39 0.22 16 52 H 0.07 0.71 6.81 -51.93 -0.35 0.36 16 LS Contribution 412.06 15.07 6.21 6.21 Total: -1.00 -34.46 412.06 -8.16 -42.62 By element: Atomic # 1 Polarization: 25.34 SS G_CDS: -8.93 Total: 16.42 kcal Atomic # 6 Polarization: 6.87 SS G_CDS: 0.07 Total: 6.94 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: -0.18 Total: -58.36 kcal Atomic # 8 Polarization: -28.30 SS G_CDS: -0.62 Total: -28.92 kcal Atomic # 14 Polarization: 19.81 SS G_CDS: -4.71 Total: 15.10 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.46 -8.16 -42.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318625826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.195 kcal (2) G-P(sol) polarization free energy of solvation -34.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds