Wall clock time and date at job start Wed Apr 1 2020 00:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47152 * 2 1 4 4 H 1.09006 * 109.46873 * 54.99741 * 3 2 1 5 5 O 1.42903 * 109.47098 * 295.00088 * 3 2 1 6 6 C 1.42899 * 114.00146 * 149.99915 * 5 3 2 7 7 C 1.50696 * 109.47160 * 174.99757 * 3 2 1 8 8 O 1.21288 * 119.99939 * 115.00365 * 7 3 2 9 9 N 1.34777 * 119.99900 * 294.99932 * 7 3 2 10 10 C 1.46504 * 119.99671 * 174.97012 * 9 7 3 11 11 C 1.52998 * 110.01609 * 301.34222 * 10 9 7 12 12 N 1.46896 * 109.47092 * 304.19940 * 11 10 9 13 13 C 1.46903 * 111.00152 * 174.64958 * 12 11 10 14 14 C 1.50703 * 109.47038 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00323 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99641 * 180.02562 * 14 13 12 17 17 C 1.37097 * 120.00021 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99589 * 359.97438 * 17 16 14 19 19 C 1.38941 * 120.00314 * 179.97438 * 17 16 14 20 20 N 1.31409 * 120.00245 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48507 * 109.47052 * 89.99534 * 21 19 17 23 23 H 1.48497 * 109.47387 * 210.00068 * 21 19 17 24 24 H 1.48502 * 109.47228 * 329.99883 * 21 19 17 25 25 C 1.54268 * 110.07240 * 62.75937 * 10 9 7 26 26 C 1.54889 * 104.19693 * 95.69664 * 25 10 9 27 27 C 1.54890 * 102.74746 * 37.94385 * 26 25 10 28 28 C 1.53877 * 110.03222 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.47442 * 299.99953 * 1 2 3 30 30 H 1.08993 * 109.47003 * 60.00213 * 1 2 3 31 31 H 1.08997 * 109.46988 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47484 * 239.99578 * 2 1 3 33 33 H 1.09002 * 109.46777 * 119.99766 * 2 1 3 34 34 H 1.09000 * 109.47151 * 59.99463 * 6 5 3 35 35 H 1.08998 * 109.46933 * 179.97438 * 6 5 3 36 36 H 1.09002 * 109.47007 * 300.00327 * 6 5 3 37 37 H 0.96995 * 120.00597 * 354.96650 * 9 7 3 38 38 H 1.09003 * 109.47106 * 184.20476 * 11 10 9 39 39 H 1.08997 * 109.47632 * 64.20495 * 11 10 9 40 40 H 1.00896 * 111.00440 * 298.61044 * 12 11 10 41 41 H 1.08997 * 109.47204 * 300.00807 * 13 12 11 42 42 H 1.09006 * 109.46664 * 60.00198 * 13 12 11 43 43 H 0.97000 * 119.99992 * 359.97438 * 16 14 13 44 44 H 0.97003 * 120.00099 * 180.02562 * 20 19 17 45 45 H 1.09001 * 110.48395 * 214.37386 * 25 10 9 46 46 H 1.08996 * 110.48923 * 337.01527 * 25 10 9 47 47 H 1.08997 * 110.75832 * 279.62682 * 26 25 10 48 48 H 1.09003 * 110.75775 * 156.25515 * 26 25 10 49 49 H 1.08997 * 110.48678 * 203.38221 * 27 26 25 50 50 H 1.08993 * 110.49096 * 80.73694 * 27 26 25 51 51 H 1.09001 * 110.02647 * 359.95256 * 28 10 9 52 52 H 1.08997 * 110.03415 * 121.38259 * 28 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 1.4559 3.4903 -1.1003 7 6 3.5419 1.4443 0.1239 8 8 4.2250 1.8611 -0.7875 9 7 4.1259 0.9828 1.2475 10 6 5.5853 0.8815 1.3258 11 6 6.1071 -0.0334 0.2161 12 7 5.4453 -1.3416 0.3084 13 6 5.8268 -2.2052 -0.8171 14 6 5.1294 -3.5350 -0.6888 15 8 4.3873 -3.7428 0.2477 16 7 5.3305 -4.4934 -1.6149 17 6 4.6958 -5.7030 -1.4985 18 1 4.0349 -5.8880 -0.6645 19 6 4.9026 -6.6909 -2.4534 20 7 4.2946 -7.8505 -2.3415 21 14 6.0462 -6.3712 -3.8954 22 1 7.4268 -6.7808 -3.5326 23 1 5.5904 -7.1545 -5.0718 24 1 6.0306 -4.9241 -4.2282 25 6 6.2208 2.2814 1.1990 26 6 6.4448 2.7311 2.6642 27 6 6.8769 1.4178 3.3625 28 6 6.0024 0.3317 2.7012 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3768 3.9644 -0.7609 35 1 1.1723 3.9004 -2.0696 36 1 0.6618 3.6808 -0.3783 37 1 3.5800 0.7178 2.0042 38 1 7.1837 -0.1623 0.3276 39 1 5.8934 0.4142 -0.7545 40 1 5.6469 -1.7875 1.1907 41 1 5.5348 -1.7311 -1.7542 42 1 6.9060 -2.3581 -0.8082 43 1 5.9238 -4.3271 -2.3641 44 1 4.4393 -8.5403 -3.0080 45 1 7.1713 2.2223 0.6686 46 1 5.5408 2.9645 0.6901 47 1 5.5199 3.1124 3.0969 48 1 7.2365 3.4780 2.7224 49 1 6.6756 1.4704 4.4324 50 1 7.9332 1.2191 3.1815 51 1 5.1190 0.1412 3.3106 52 1 6.5766 -0.5865 2.5778 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001318625826.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:27 Heat of formation + Delta-G solvation = -148.335293 kcal Electronic energy + Delta-G solvation = -31748.258612 eV Core-core repulsion = 27553.438141 eV Total energy + Delta-G solvation = -4194.820471 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.58585 -40.29587 -39.58817 -37.92574 -36.44231 -35.73101 -34.98738 -33.89366 -33.73567 -30.71696 -29.74089 -28.80402 -27.96043 -26.82090 -25.87307 -24.19215 -23.19544 -22.01740 -21.32173 -21.04922 -20.47331 -20.13196 -18.47523 -18.11598 -17.73471 -17.30197 -16.77772 -16.61403 -16.41061 -16.19275 -15.88598 -15.58693 -15.26718 -15.21471 -14.99011 -14.85785 -14.57912 -14.50755 -14.24883 -14.10141 -13.98594 -13.48752 -13.29911 -13.16510 -12.99691 -12.83365 -12.61809 -12.45381 -12.43591 -12.35993 -12.05278 -12.00758 -11.98232 -11.92478 -11.74582 -11.59628 -11.52313 -11.42898 -11.37100 -10.46613 -10.25457 -10.11713 -9.84147 -9.32296 -8.42561 -6.02563 1.29060 1.32289 1.41513 1.68576 1.93441 2.20638 2.21812 2.68769 2.86503 3.13919 3.37466 3.52134 3.69521 3.82589 3.94444 3.96219 3.97058 4.11972 4.27488 4.35504 4.37259 4.40471 4.45632 4.49731 4.51481 4.53176 4.60542 4.61882 4.69498 4.77176 4.81254 4.85061 4.89428 4.94115 5.08620 5.11004 5.14693 5.20968 5.24982 5.32440 5.39722 5.47447 5.50969 5.73429 5.87500 5.99410 6.10147 6.43639 6.58388 6.71325 6.86507 7.38257 7.39649 7.93334 8.74881 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.010052 B = 0.003301 C = 0.002777 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2784.875123 B = 8479.396388 C =10082.178355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.109 4.109 3 C 0.079 3.921 4 H 0.114 0.886 5 O -0.384 6.384 6 C 0.027 3.973 7 C 0.497 3.503 8 O -0.566 6.566 9 N -0.692 5.692 10 C 0.182 3.818 11 C 0.053 3.947 12 N -0.668 5.668 13 C 0.062 3.938 14 C 0.453 3.547 15 O -0.604 6.604 16 N -0.593 5.593 17 C -0.326 4.326 18 H 0.059 0.941 19 C -0.012 4.012 20 N -0.932 5.932 21 Si 0.960 3.040 22 H -0.255 1.255 23 H -0.274 1.274 24 H -0.239 1.239 25 C -0.121 4.121 26 C -0.117 4.117 27 C -0.117 4.117 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.088 0.912 34 H 0.035 0.965 35 H 0.094 0.906 36 H 0.065 0.935 37 H 0.408 0.592 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.346 0.654 41 H 0.093 0.907 42 H 0.074 0.926 43 H 0.387 0.613 44 H 0.279 0.721 45 H 0.070 0.930 46 H 0.058 0.942 47 H 0.070 0.930 48 H 0.076 0.924 49 H 0.082 0.918 50 H 0.071 0.929 51 H 0.084 0.916 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.679 26.267 9.493 28.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.147 4.147 3 C 0.018 3.982 4 H 0.131 0.869 5 O -0.302 6.302 6 C -0.069 4.069 7 C 0.283 3.717 8 O -0.445 6.445 9 N -0.345 5.345 10 C 0.095 3.905 11 C -0.077 4.077 12 N -0.301 5.301 13 C -0.070 4.070 14 C 0.241 3.759 15 O -0.488 6.488 16 N -0.235 5.235 17 C -0.455 4.455 18 H 0.078 0.922 19 C -0.211 4.211 20 N -0.573 5.573 21 Si 0.780 3.220 22 H -0.179 1.179 23 H -0.199 1.199 24 H -0.163 1.163 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.154 4.154 28 C -0.162 4.162 29 H 0.096 0.904 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.107 0.893 34 H 0.054 0.946 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.245 0.755 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.165 0.835 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.222 0.778 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.077 0.923 47 H 0.088 0.912 48 H 0.095 0.905 49 H 0.101 0.899 50 H 0.090 0.910 51 H 0.102 0.898 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.011 26.316 8.917 27.859 hybrid contribution 1.046 -0.928 -0.519 1.491 sum 3.057 25.389 8.398 26.916 Atomic orbital electron populations 1.21679 0.93403 1.02094 1.02803 1.21468 0.97926 0.92530 1.02741 1.22197 0.90185 0.96328 0.89502 0.86858 1.87990 1.88175 1.22261 1.31756 1.22975 0.99984 0.80154 1.03796 1.21513 0.91601 0.76529 0.82062 1.90622 1.65782 1.47859 1.40243 1.45893 1.06905 1.65183 1.16504 1.20994 0.79909 0.94526 0.95044 1.22420 0.95850 0.88932 1.00452 1.59905 1.62376 1.03209 1.04600 1.21557 0.98215 0.90232 0.97017 1.20771 0.85131 0.86475 0.83518 1.90519 1.41459 1.81915 1.34902 1.42062 1.43591 1.13064 1.24755 1.19010 1.25501 0.90215 1.10757 0.92244 1.26026 0.99441 0.94342 1.01277 1.69789 1.44148 1.05823 1.37531 0.85429 0.78799 0.80150 0.77576 1.17934 1.19887 1.16282 1.22624 1.00401 0.94869 0.98123 1.22475 1.01694 0.97609 0.93627 1.22350 0.99497 0.93461 1.00132 1.22465 1.01093 0.99128 0.93485 0.90383 0.92577 0.92840 0.94197 0.89346 0.94590 0.88750 0.91614 0.75532 0.93342 0.91505 0.83454 0.88931 0.90851 0.77782 0.91137 0.91134 0.92343 0.91158 0.90495 0.89948 0.91045 0.89781 0.91172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.98 9.81 71.98 0.71 -2.27 16 2 C -0.11 -2.74 5.61 30.59 0.17 -2.56 16 3 C 0.08 1.78 2.52 29.85 0.08 1.86 16 4 H 0.11 1.70 7.79 -2.38 -0.02 1.68 16 5 O -0.38 -10.07 9.42 -129.99 -1.22 -11.30 16 6 C 0.03 0.49 10.81 113.37 1.23 1.71 16 7 C 0.50 12.89 6.35 87.66 0.56 13.45 16 8 O -0.57 -18.84 13.29 15.93 0.21 -18.63 16 9 N -0.69 -14.18 4.78 -419.63 -2.01 -16.18 16 10 C 0.18 3.62 0.68 4.33 0.00 3.62 16 11 C 0.05 1.34 4.05 86.30 0.35 1.69 16 12 N -0.67 -20.24 5.84 -517.93 -3.03 -23.27 16 13 C 0.06 2.10 6.16 85.56 0.53 2.63 16 14 C 0.45 20.99 7.82 87.66 0.69 21.68 16 15 O -0.60 -33.01 15.78 -3.06 -0.05 -33.06 16 16 N -0.59 -28.90 5.09 -306.99 -1.56 -30.47 16 17 C -0.33 -19.33 10.16 84.04 0.85 -18.48 16 18 H 0.06 4.15 7.39 -2.91 -0.02 4.13 16 19 C -0.01 -0.68 5.50 84.92 0.47 -0.21 16 20 N -0.93 -56.67 13.96 21.66 0.30 -56.37 16 21 Si 0.96 40.11 27.74 68.60 1.90 42.02 16 22 H -0.25 -10.01 7.11 99.48 0.71 -9.30 16 23 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 24 H -0.24 -8.77 6.52 99.48 0.65 -8.12 16 25 C -0.12 -2.26 5.59 31.67 0.18 -2.08 16 26 C -0.12 -1.50 6.91 31.89 0.22 -1.28 16 27 C -0.12 -1.37 6.83 31.69 0.22 -1.16 16 28 C -0.12 -1.90 5.82 31.34 0.18 -1.72 16 29 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 30 H 0.06 1.22 7.82 -2.39 -0.02 1.20 16 31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 33 H 0.09 2.13 7.92 -2.39 -0.02 2.11 16 34 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.07 0.83 8.08 -2.39 -0.02 0.81 16 37 H 0.41 6.48 7.95 -92.71 -0.74 5.74 16 38 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 2.06 6.41 -2.39 -0.02 2.05 16 40 H 0.35 10.46 7.15 -89.70 -0.64 9.82 16 41 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.07 2.05 8.14 -2.38 -0.02 2.03 16 43 H 0.39 16.07 5.76 -92.71 -0.53 15.54 16 44 H 0.28 15.52 8.31 -92.71 -0.77 14.75 16 45 H 0.07 1.33 7.85 -2.39 -0.02 1.31 16 46 H 0.06 1.35 6.43 -2.39 -0.02 1.34 16 47 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 48 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 49 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 51 H 0.08 1.15 7.44 -2.39 -0.02 1.13 16 52 H 0.07 1.18 6.81 -2.39 -0.02 1.16 16 Total: -1.00 -80.43 412.06 -0.07 -80.50 By element: Atomic # 1 Polarization: 50.89 SS G_CDS: -1.03 Total: 49.86 kcal Atomic # 6 Polarization: 10.47 SS G_CDS: 6.42 Total: 16.89 kcal Atomic # 7 Polarization: -119.99 SS G_CDS: -6.29 Total: -126.28 kcal Atomic # 8 Polarization: -61.92 SS G_CDS: -1.06 Total: -62.98 kcal Atomic # 14 Polarization: 40.11 SS G_CDS: 1.90 Total: 42.02 kcal Total: -80.43 -0.07 -80.50 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001318625826.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.833 kcal (2) G-P(sol) polarization free energy of solvation -80.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds