Wall clock time and date at job start Wed Apr 1 2020 00:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 H 1.08998 * 109.47389 * 304.96948 * 3 2 1 5 5 O 1.42908 * 109.46914 * 64.96957 * 3 2 1 6 6 C 1.42903 * 113.99811 * 258.71108 * 5 3 2 7 7 C 1.50700 * 109.47408 * 184.96810 * 3 2 1 8 8 O 1.21279 * 120.00110 * 245.00446 * 7 3 2 9 9 N 1.34776 * 119.99745 * 64.72575 * 7 3 2 10 10 C 1.47490 * 127.03336 * 0.29947 * 9 7 3 11 11 C 1.54001 * 107.08358 * 154.51771 * 10 9 7 12 12 C 1.54620 * 105.04470 * 1.30744 * 11 10 9 13 13 C 1.52997 * 110.73954 * 263.33022 * 12 11 10 14 14 C 1.53003 * 110.73911 * 140.18660 * 12 11 10 15 15 N 1.46890 * 109.47100 * 61.45368 * 14 12 11 16 16 C 1.46907 * 111.00284 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47307 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00456 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99639 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99944 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00126 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00134 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99671 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46893 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47028 * 119.99882 * 24 22 20 27 27 H 1.48502 * 109.47042 * 239.99701 * 24 22 20 28 28 C 1.48115 * 127.03360 * 179.97438 * 9 7 3 29 29 H 1.09005 * 109.47141 * 175.10112 * 1 2 3 30 30 H 1.09004 * 109.47122 * 295.09955 * 1 2 3 31 31 H 1.08993 * 109.47626 * 55.10167 * 1 2 3 32 32 H 1.09002 * 109.47263 * 240.00153 * 2 1 3 33 33 H 1.09003 * 109.47658 * 119.99623 * 2 1 3 34 34 H 1.09001 * 109.47001 * 185.56012 * 6 5 3 35 35 H 1.09000 * 109.47279 * 305.55792 * 6 5 3 36 36 H 1.08995 * 109.46870 * 65.55628 * 6 5 3 37 37 H 1.09005 * 109.91421 * 273.87969 * 10 9 7 38 38 H 1.09000 * 109.90954 * 35.15866 * 10 9 7 39 39 H 1.09004 * 110.32731 * 120.19861 * 11 10 9 40 40 H 1.08998 * 110.32923 * 242.41573 * 11 10 9 41 41 H 1.09008 * 109.47052 * 58.54499 * 13 12 11 42 42 H 1.08999 * 109.47327 * 178.54183 * 13 12 11 43 43 H 1.08999 * 109.47128 * 298.54609 * 13 12 11 44 44 H 1.09004 * 109.46721 * 181.45695 * 14 12 11 45 45 H 1.08998 * 109.46942 * 301.44944 * 14 12 11 46 46 H 1.00901 * 111.00775 * 303.95137 * 15 14 12 47 47 H 1.08996 * 109.46868 * 300.00479 * 16 15 14 48 48 H 1.09000 * 109.46549 * 59.99451 * 16 15 14 49 49 H 0.97003 * 120.00080 * 0.02562 * 19 17 16 50 50 H 0.97008 * 119.99640 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.66268 * 337.76018 * 28 9 7 52 52 H 1.08992 * 110.66760 * 100.88303 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9815 -0.8421 5 8 1.6612 2.0816 1.2208 6 6 0.5278 2.9433 1.0985 7 6 3.5419 1.4445 -0.1230 8 8 4.2245 1.8614 0.7886 9 7 4.1267 0.9776 -1.2440 10 6 3.4520 0.4385 -2.4395 11 6 4.4076 0.6439 -3.6296 12 6 5.6697 1.2991 -3.0224 13 6 5.6233 2.8195 -3.1869 14 6 6.9373 0.7258 -3.6591 15 7 6.9351 1.0136 -5.0995 16 6 8.1405 0.4772 -5.7455 17 6 8.1025 0.7906 -7.2191 18 8 7.1639 1.4011 -7.6853 19 7 9.1115 0.3924 -8.0189 20 6 9.0773 0.6779 -9.3594 21 1 8.2415 1.2216 -9.7745 22 6 10.1173 0.2670 -10.1841 23 7 11.1340 -0.3950 -9.6790 24 14 10.0709 0.6566 -12.0104 25 1 8.8282 1.4061 -12.3252 26 1 11.2518 1.4817 -12.3707 27 1 10.0956 -0.6087 -12.7873 28 6 5.5783 0.9073 -1.5299 29 1 -0.3634 -1.0240 -0.0878 30 1 -0.3633 0.4359 0.9307 31 1 -0.3634 0.5879 -0.8428 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3644 3.4648 2.0416 35 1 0.7084 3.6711 0.3074 36 1 -0.3539 2.3513 0.8531 37 1 3.2504 -0.6242 -2.3045 38 1 2.5203 0.9765 -2.6143 39 1 4.6595 -0.3148 -4.0829 40 1 3.9556 1.3058 -4.3683 41 1 4.7295 3.2105 -2.7005 42 1 6.5085 3.2616 -2.7297 43 1 5.5986 3.0697 -4.2475 44 1 7.8135 1.1824 -3.1986 45 1 6.9659 -0.3527 -3.5041 46 1 6.0998 0.6561 -5.5385 47 1 9.0248 0.9324 -5.2995 48 1 8.1779 -0.6030 -5.6049 49 1 9.8620 -0.0962 -7.6461 50 1 11.8599 -0.6822 -10.2549 51 1 6.1269 1.6185 -0.9123 52 1 5.9520 -0.1051 -1.3767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001324700737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:49 Heat of formation + Delta-G solvation = -117.096475 kcal Electronic energy + Delta-G solvation = -30221.672875 eV Core-core repulsion = 26028.207021 eV Total energy + Delta-G solvation = -4193.465854 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -40.78536 -39.14462 -38.23144 -37.56335 -35.51202 -34.04953 -33.75824 -32.39493 -31.21143 -30.00826 -29.04342 -27.48645 -27.11537 -25.77649 -24.73899 -23.64041 -23.13592 -22.21033 -19.86494 -19.44404 -19.06341 -17.91646 -17.78246 -16.92428 -16.62158 -16.08069 -15.80626 -15.69373 -15.43174 -14.85759 -14.65927 -14.52065 -14.29116 -14.12638 -13.85066 -13.77920 -13.69710 -13.39693 -13.19154 -12.90128 -12.74939 -12.48348 -12.37729 -12.21646 -12.14054 -11.93927 -11.83970 -11.76486 -11.54204 -11.43479 -11.27825 -11.06995 -10.91351 -10.77036 -10.72980 -10.41784 -10.35867 -10.23998 -9.67146 -9.53533 -8.96720 -8.47836 -8.07075 -7.97318 -6.43354 -3.84178 2.31076 2.40055 3.15022 3.25739 3.32767 3.47143 3.89137 3.95727 4.09431 4.26011 4.27261 4.34588 4.37123 4.51816 4.69798 4.75571 4.84004 4.91340 4.93470 5.00524 5.02198 5.03427 5.16397 5.20067 5.24286 5.26256 5.28929 5.41336 5.46617 5.53270 5.54391 5.57788 5.65782 5.71647 5.74114 5.78433 5.86080 5.93012 5.96732 6.07803 6.12726 6.24973 6.41072 6.62030 7.17846 7.22549 7.53846 7.63642 7.89394 8.05001 8.59561 9.16411 9.52907 10.04078 10.74399 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.001719 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.978872 B =16284.652223 C =16552.138948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.141 4.141 3 C 0.078 3.922 4 H 0.087 0.913 5 O -0.357 6.357 6 C 0.024 3.976 7 C 0.529 3.471 8 O -0.521 6.521 9 N -0.617 5.617 10 C 0.099 3.901 11 C -0.129 4.129 12 C -0.069 4.069 13 C -0.126 4.126 14 C 0.074 3.926 15 N -0.665 5.665 16 C 0.050 3.950 17 C 0.441 3.559 18 O -0.584 6.584 19 N -0.564 5.564 20 C -0.299 4.299 21 H 0.104 0.896 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.281 1.281 27 H -0.282 1.282 28 C 0.115 3.885 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.090 0.910 35 H 0.044 0.956 36 H 0.048 0.952 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.044 0.956 42 H 0.054 0.946 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.030 0.970 46 H 0.348 0.652 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.271 0.729 51 H 0.087 0.913 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.815 -0.782 19.318 26.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.179 4.179 3 C 0.016 3.984 4 H 0.105 0.895 5 O -0.275 6.275 6 C -0.072 4.072 7 C 0.317 3.683 8 O -0.395 6.395 9 N -0.353 5.353 10 C -0.024 4.024 11 C -0.167 4.167 12 C -0.070 4.070 13 C -0.183 4.183 14 C -0.056 4.056 15 N -0.297 5.297 16 C -0.082 4.082 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.201 5.201 20 C -0.429 4.429 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.543 5.543 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.207 1.207 27 H -0.208 1.208 28 C -0.008 4.008 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.097 0.903 40 H 0.105 0.895 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.095 0.905 44 H 0.094 0.906 45 H 0.048 0.952 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 51 H 0.105 0.895 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -18.615 0.432 19.759 27.150 hybrid contribution 0.232 -1.126 -1.012 1.532 sum -18.383 -0.694 18.747 26.265 Atomic orbital electron populations 1.21833 0.94641 1.02439 1.02121 1.22010 0.97206 0.94746 1.03918 1.21973 0.91746 0.95458 0.89178 0.89512 1.88029 1.48279 1.61712 1.29457 1.23027 0.88128 0.93146 1.02924 1.20195 0.89833 0.77343 0.80977 1.90731 1.65004 1.45772 1.38032 1.48699 1.08173 1.62713 1.15752 1.22243 0.96625 0.98812 0.84721 1.22658 0.95174 1.02001 0.96901 1.21596 0.94637 0.97428 0.93334 1.21658 1.00862 0.92446 1.03324 1.21898 0.96898 0.97390 0.89442 1.60017 1.04828 1.63834 1.01044 1.21672 0.94337 0.97502 0.94711 1.19806 0.85044 0.85223 0.87277 1.90516 1.35585 1.44751 1.75937 1.41878 1.19898 1.50101 1.08202 1.19751 1.06598 1.33806 0.82703 0.87867 1.25268 0.95255 0.96805 1.00658 1.69624 1.09555 1.38438 1.36656 0.85801 0.78404 0.78113 0.82024 1.19228 1.20738 1.20790 1.22470 0.81121 1.01866 0.95345 0.91917 0.91977 0.92588 0.90066 0.90377 0.89181 0.93780 0.93388 0.91116 0.90844 0.90332 0.89509 0.93703 0.92681 0.90471 0.90623 0.95205 0.83206 0.89568 0.93935 0.77463 0.91926 0.89503 0.90835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.77 8.90 37.16 0.33 -0.44 16 2 C -0.14 -0.95 5.55 -26.73 -0.15 -1.09 16 3 C 0.08 0.68 2.06 -27.88 -0.06 0.63 16 4 H 0.09 0.59 7.16 -51.93 -0.37 0.22 16 5 O -0.36 -3.74 9.65 -55.09 -0.53 -4.27 16 6 C 0.02 0.16 10.48 101.05 1.06 1.22 16 7 C 0.53 6.22 7.27 -10.99 -0.08 6.14 16 8 O -0.52 -8.44 16.72 -14.30 -0.24 -8.68 16 9 N -0.62 -5.93 3.22 -169.99 -0.55 -6.48 16 10 C 0.10 0.69 5.40 -2.98 -0.02 0.67 16 11 C -0.13 -1.06 5.14 -25.36 -0.13 -1.19 16 12 C -0.07 -0.67 0.74 -152.83 -0.11 -0.78 16 13 C -0.13 -1.40 8.30 37.16 0.31 -1.09 16 14 C 0.07 0.82 4.58 -3.83 -0.02 0.80 16 15 N -0.66 -9.79 5.55 -115.06 -0.64 -10.43 16 16 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 17 C 0.44 10.13 7.82 -10.99 -0.09 10.04 16 18 O -0.58 -15.41 15.78 5.55 0.09 -15.33 16 19 N -0.56 -14.07 5.29 -10.97 -0.06 -14.12 16 20 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 21 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 23 N -0.90 -24.31 13.05 55.50 0.72 -23.59 16 24 Si 0.93 20.84 29.55 -169.99 -5.02 15.82 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 28 C 0.11 1.12 5.97 -2.32 -0.01 1.11 16 29 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.06 0.34 6.54 -51.93 -0.34 0.00 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.45 5.59 -51.93 -0.29 0.16 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.04 0.26 8.00 -51.93 -0.42 -0.16 16 36 H 0.05 0.23 6.03 -51.93 -0.31 -0.09 16 37 H 0.07 0.40 7.23 -51.93 -0.38 0.02 16 38 H 0.07 0.41 7.40 -51.93 -0.38 0.02 16 39 H 0.08 0.62 7.66 -51.93 -0.40 0.22 16 40 H 0.09 0.75 7.86 -51.93 -0.41 0.34 16 41 H 0.04 0.49 8.10 -51.92 -0.42 0.07 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.08 0.99 7.79 -51.93 -0.40 0.58 16 44 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 45 H 0.03 0.30 8.12 -51.93 -0.42 -0.12 16 46 H 0.35 5.23 7.31 -39.29 -0.29 4.94 16 47 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 48 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.39 9.35 7.90 -40.82 -0.32 9.03 16 50 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 51 H 0.09 0.97 7.75 -51.93 -0.40 0.57 16 52 H 0.07 0.65 8.03 -51.93 -0.42 0.24 16 LS Contribution 412.74 15.07 6.22 6.22 Total: -1.00 -34.16 412.74 -8.11 -42.26 By element: Atomic # 1 Polarization: 18.55 SS G_CDS: -8.86 Total: 9.69 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: 0.76 Total: 8.91 kcal Atomic # 7 Polarization: -54.10 SS G_CDS: -0.52 Total: -54.62 kcal Atomic # 8 Polarization: -27.59 SS G_CDS: -0.68 Total: -28.28 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -34.16 -8.11 -42.26 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324700737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.834 kcal (2) G-P(sol) polarization free energy of solvation -34.156 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds