Wall clock time and date at job start Wed Apr 1 2020 00:49:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46895 * 2 1 4 4 H 1.08998 * 109.47389 * 304.96948 * 3 2 1 5 5 O 1.42908 * 109.46914 * 64.96957 * 3 2 1 6 6 C 1.42903 * 113.99811 * 258.71108 * 5 3 2 7 7 C 1.50700 * 109.47408 * 184.96810 * 3 2 1 8 8 O 1.21279 * 120.00110 * 245.00446 * 7 3 2 9 9 N 1.34776 * 119.99745 * 64.72575 * 7 3 2 10 10 C 1.47490 * 127.03336 * 0.29947 * 9 7 3 11 11 C 1.54001 * 107.08358 * 154.51771 * 10 9 7 12 12 C 1.54620 * 105.04470 * 1.30744 * 11 10 9 13 13 C 1.52997 * 110.73954 * 263.33022 * 12 11 10 14 14 C 1.53003 * 110.73911 * 140.18660 * 12 11 10 15 15 N 1.46890 * 109.47100 * 61.45368 * 14 12 11 16 16 C 1.46907 * 111.00284 * 179.97438 * 15 14 12 17 17 C 1.50694 * 109.47307 * 179.97438 * 16 15 14 18 18 O 1.21286 * 120.00456 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99639 * 180.02562 * 17 16 15 20 20 C 1.37100 * 119.99944 * 180.02562 * 19 17 16 21 21 H 1.07996 * 120.00126 * 359.97438 * 20 19 17 22 22 C 1.38951 * 120.00134 * 180.02562 * 20 19 17 23 23 N 1.31414 * 119.99671 * 359.97438 * 22 20 19 24 24 Si 1.86802 * 120.00086 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46893 * 359.97438 * 24 22 20 26 26 H 1.48495 * 109.47028 * 119.99882 * 24 22 20 27 27 H 1.48502 * 109.47042 * 239.99701 * 24 22 20 28 28 C 1.48115 * 127.03360 * 179.97438 * 9 7 3 29 29 H 1.09005 * 109.47141 * 175.10112 * 1 2 3 30 30 H 1.09004 * 109.47122 * 295.09955 * 1 2 3 31 31 H 1.08993 * 109.47626 * 55.10167 * 1 2 3 32 32 H 1.09002 * 109.47263 * 240.00153 * 2 1 3 33 33 H 1.09003 * 109.47658 * 119.99623 * 2 1 3 34 34 H 1.09001 * 109.47001 * 185.56012 * 6 5 3 35 35 H 1.09000 * 109.47279 * 305.55792 * 6 5 3 36 36 H 1.08995 * 109.46870 * 65.55628 * 6 5 3 37 37 H 1.09005 * 109.91421 * 273.87969 * 10 9 7 38 38 H 1.09000 * 109.90954 * 35.15866 * 10 9 7 39 39 H 1.09004 * 110.32731 * 120.19861 * 11 10 9 40 40 H 1.08998 * 110.32923 * 242.41573 * 11 10 9 41 41 H 1.09008 * 109.47052 * 58.54499 * 13 12 11 42 42 H 1.08999 * 109.47327 * 178.54183 * 13 12 11 43 43 H 1.08999 * 109.47128 * 298.54609 * 13 12 11 44 44 H 1.09004 * 109.46721 * 181.45695 * 14 12 11 45 45 H 1.08998 * 109.46942 * 301.44944 * 14 12 11 46 46 H 1.00901 * 111.00775 * 303.95137 * 15 14 12 47 47 H 1.08996 * 109.46868 * 300.00479 * 16 15 14 48 48 H 1.09000 * 109.46549 * 59.99451 * 16 15 14 49 49 H 0.97003 * 120.00080 * 0.02562 * 19 17 16 50 50 H 0.97008 * 119.99640 * 179.97438 * 23 22 20 51 51 H 1.09002 * 110.66268 * 337.76018 * 28 9 7 52 52 H 1.08992 * 110.66760 * 100.88303 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6057 1.9815 -0.8421 5 8 1.6612 2.0816 1.2208 6 6 0.5278 2.9433 1.0985 7 6 3.5419 1.4445 -0.1230 8 8 4.2245 1.8614 0.7886 9 7 4.1267 0.9776 -1.2440 10 6 3.4520 0.4385 -2.4395 11 6 4.4076 0.6439 -3.6296 12 6 5.6697 1.2991 -3.0224 13 6 5.6233 2.8195 -3.1869 14 6 6.9373 0.7258 -3.6591 15 7 6.9351 1.0136 -5.0995 16 6 8.1405 0.4772 -5.7455 17 6 8.1025 0.7906 -7.2191 18 8 7.1639 1.4011 -7.6853 19 7 9.1115 0.3924 -8.0189 20 6 9.0773 0.6779 -9.3594 21 1 8.2415 1.2216 -9.7745 22 6 10.1173 0.2670 -10.1841 23 7 11.1340 -0.3950 -9.6790 24 14 10.0709 0.6566 -12.0104 25 1 8.8282 1.4061 -12.3252 26 1 11.2518 1.4817 -12.3707 27 1 10.0956 -0.6087 -12.7873 28 6 5.5783 0.9073 -1.5299 29 1 -0.3634 -1.0240 -0.0878 30 1 -0.3633 0.4359 0.9307 31 1 -0.3634 0.5879 -0.8428 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.3644 3.4648 2.0416 35 1 0.7084 3.6711 0.3074 36 1 -0.3539 2.3513 0.8531 37 1 3.2504 -0.6242 -2.3045 38 1 2.5203 0.9765 -2.6143 39 1 4.6595 -0.3148 -4.0829 40 1 3.9556 1.3058 -4.3683 41 1 4.7295 3.2105 -2.7005 42 1 6.5085 3.2616 -2.7297 43 1 5.5986 3.0697 -4.2475 44 1 7.8135 1.1824 -3.1986 45 1 6.9659 -0.3527 -3.5041 46 1 6.0998 0.6561 -5.5385 47 1 9.0248 0.9324 -5.2995 48 1 8.1779 -0.6030 -5.6049 49 1 9.8620 -0.0962 -7.6461 50 1 11.8599 -0.6822 -10.2549 51 1 6.1269 1.6185 -0.9123 52 1 5.9520 -0.1051 -1.3767 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001324700737.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:49:48 Heat of formation + Delta-G solvation = -141.668581 kcal Electronic energy + Delta-G solvation = -30222.738402 eV Core-core repulsion = 26028.207021 eV Total energy + Delta-G solvation = -4194.531380 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.57791 -40.21724 -39.70065 -38.43288 -36.65940 -35.83431 -34.55682 -33.39917 -33.11944 -30.71709 -29.67909 -28.82806 -27.86610 -26.81385 -26.06871 -24.43889 -24.24257 -22.76275 -21.11075 -20.59061 -20.08367 -19.84475 -18.53229 -17.88124 -17.55163 -17.24186 -16.82499 -16.54791 -16.45861 -16.35595 -16.00526 -15.53233 -15.24828 -15.17545 -15.02826 -14.81869 -14.61312 -14.30866 -14.08722 -13.98199 -13.53597 -13.47684 -13.33547 -13.22253 -13.11534 -12.97683 -12.88905 -12.85322 -12.64333 -12.40381 -12.38808 -12.31531 -12.10780 -11.85042 -11.73728 -11.53659 -11.51534 -11.48698 -11.13344 -10.41725 -10.30839 -9.99379 -9.75542 -9.24561 -8.45352 -5.93745 1.37674 1.43062 1.47179 1.56966 1.66592 2.08105 2.30267 2.87215 2.92818 3.22444 3.33332 3.52317 3.58468 3.70702 3.79684 3.85937 3.98565 4.19149 4.23464 4.27287 4.34720 4.35555 4.39122 4.48824 4.51328 4.54703 4.58014 4.61578 4.70333 4.73260 4.79434 4.79958 4.82452 4.88037 4.92196 5.04254 5.08004 5.11635 5.13297 5.27728 5.31944 5.36487 5.42811 5.45726 5.91066 6.04619 6.13134 6.45404 6.49386 6.62078 7.05455 7.14661 7.59002 8.14020 8.72200 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029467 B = 0.001719 C = 0.001691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.978872 B =16284.652223 C =16552.138948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.080 3.920 4 H 0.110 0.890 5 O -0.391 6.391 6 C 0.018 3.982 7 C 0.521 3.479 8 O -0.578 6.578 9 N -0.614 5.614 10 C 0.098 3.902 11 C -0.127 4.127 12 C -0.062 4.062 13 C -0.120 4.120 14 C 0.077 3.923 15 N -0.677 5.677 16 C 0.065 3.935 17 C 0.439 3.561 18 O -0.622 6.622 19 N -0.575 5.575 20 C -0.332 4.332 21 H 0.079 0.921 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.992 3.008 25 H -0.273 1.273 26 H -0.273 1.273 27 H -0.271 1.271 28 C 0.115 3.885 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.096 0.904 33 H 0.059 0.941 34 H 0.094 0.906 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.088 0.912 40 H 0.082 0.918 41 H 0.044 0.956 42 H 0.046 0.954 43 H 0.058 0.942 44 H 0.075 0.925 45 H 0.051 0.949 46 H 0.347 0.653 47 H 0.100 0.900 48 H 0.068 0.932 49 H 0.396 0.604 50 H 0.277 0.723 51 H 0.067 0.933 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.033 -2.001 18.959 27.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.019 3.981 4 H 0.127 0.873 5 O -0.309 6.309 6 C -0.077 4.077 7 C 0.310 3.690 8 O -0.457 6.457 9 N -0.348 5.348 10 C -0.024 4.024 11 C -0.165 4.165 12 C -0.064 4.064 13 C -0.177 4.177 14 C -0.052 4.052 15 N -0.310 5.310 16 C -0.067 4.067 17 C 0.227 3.773 18 O -0.508 6.508 19 N -0.213 5.213 20 C -0.462 4.462 21 H 0.097 0.903 22 C -0.214 4.214 23 N -0.562 5.562 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.198 1.198 27 H -0.196 1.196 28 C -0.008 4.008 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.089 0.911 32 H 0.115 0.885 33 H 0.078 0.922 34 H 0.112 0.888 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.106 0.894 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.065 0.935 43 H 0.077 0.923 44 H 0.094 0.906 45 H 0.069 0.931 46 H 0.166 0.834 47 H 0.119 0.881 48 H 0.086 0.914 49 H 0.230 0.770 50 H 0.086 0.914 51 H 0.085 0.915 52 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -19.838 -0.814 19.393 27.754 hybrid contribution 0.596 -0.711 -0.865 1.268 sum -19.242 -1.525 18.528 26.756 Atomic orbital electron populations 1.21821 0.93140 1.03307 1.02452 1.21995 0.98410 0.93143 1.03775 1.22103 0.89557 0.96959 0.89484 0.87253 1.87988 1.49737 1.62521 1.30682 1.23213 0.87752 0.93219 1.03550 1.20875 0.91112 0.76386 0.80603 1.90695 1.66400 1.48500 1.40119 1.48761 1.08314 1.61721 1.15984 1.22455 0.96746 1.00383 0.82779 1.22648 0.94421 1.02135 0.97254 1.21468 0.95133 0.96324 0.93435 1.21572 1.00508 0.93772 1.01851 1.21927 0.97515 0.98712 0.87044 1.59983 1.03922 1.64289 1.02786 1.21520 0.95879 0.99224 0.90124 1.20898 0.83522 0.83308 0.89614 1.90486 1.36827 1.46049 1.77428 1.41955 1.20728 1.50802 1.07766 1.19702 1.06764 1.35254 0.84432 0.90269 1.26030 0.94561 0.96220 1.04547 1.69682 1.09851 1.38545 1.38115 0.84877 0.78230 0.78236 0.77033 1.19746 1.19821 1.19606 1.22435 0.81477 1.02143 0.94735 0.90982 0.92579 0.91134 0.88521 0.92178 0.88760 0.93196 0.91377 0.88787 0.88834 0.89385 0.89907 0.93669 0.93512 0.92255 0.90643 0.93141 0.83378 0.88144 0.91383 0.77012 0.91379 0.91470 0.89337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 8.90 71.98 0.64 -0.48 16 2 C -0.14 -1.55 5.55 30.59 0.17 -1.38 16 3 C 0.08 1.29 2.06 29.85 0.06 1.36 16 4 H 0.11 1.21 7.16 -2.39 -0.02 1.19 16 5 O -0.39 -8.02 9.65 -129.99 -1.26 -9.28 16 6 C 0.02 0.22 10.48 113.37 1.19 1.41 16 7 C 0.52 12.04 7.27 87.66 0.64 12.68 16 8 O -0.58 -19.38 16.72 15.96 0.27 -19.11 16 9 N -0.61 -10.90 3.22 -810.11 -2.61 -13.51 16 10 C 0.10 1.07 5.40 86.53 0.47 1.53 16 11 C -0.13 -1.77 5.14 31.48 0.16 -1.61 16 12 C -0.06 -1.13 0.74 -51.09 -0.04 -1.16 16 13 C -0.12 -2.64 8.30 71.98 0.60 -2.04 16 14 C 0.08 1.55 4.58 86.31 0.40 1.95 16 15 N -0.68 -18.97 5.55 -517.95 -2.88 -21.85 16 16 C 0.06 2.07 6.17 85.55 0.53 2.60 16 17 C 0.44 20.14 7.82 87.66 0.69 20.83 16 18 O -0.62 -33.27 15.78 -3.05 -0.05 -33.32 16 19 N -0.58 -28.90 5.29 -307.00 -1.62 -30.52 16 20 C -0.33 -18.60 9.68 84.04 0.81 -17.78 16 21 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 22 C -0.01 -0.74 5.50 84.93 0.47 -0.27 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.92 16 24 Si 0.99 42.47 29.55 68.60 2.03 44.50 16 25 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 26 H -0.27 -11.25 7.11 99.48 0.71 -10.55 16 27 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 28 C 0.12 2.13 5.97 86.61 0.52 2.64 16 29 H 0.07 0.42 8.14 -2.38 -0.02 0.41 16 30 H 0.06 0.50 6.54 -2.39 -0.02 0.48 16 31 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.10 0.76 5.59 -2.39 -0.01 0.75 16 33 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 0.51 8.00 -2.39 -0.02 0.50 16 36 H 0.07 0.51 6.03 -2.39 -0.01 0.50 16 37 H 0.09 0.67 7.23 -2.38 -0.02 0.65 16 38 H 0.09 0.69 7.40 -2.39 -0.02 0.67 16 39 H 0.09 1.11 7.66 -2.38 -0.02 1.09 16 40 H 0.08 1.27 7.86 -2.39 -0.02 1.25 16 41 H 0.04 0.97 8.10 -2.38 -0.02 0.95 16 42 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.06 1.52 7.79 -2.39 -0.02 1.51 16 44 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 45 H 0.05 0.85 8.12 -2.39 -0.02 0.83 16 46 H 0.35 9.93 7.31 -89.69 -0.66 9.27 16 47 H 0.10 2.96 8.14 -2.39 -0.02 2.94 16 48 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.40 18.91 7.90 -92.71 -0.73 18.18 16 50 H 0.28 13.83 8.31 -92.70 -0.77 13.06 16 51 H 0.07 1.53 7.75 -2.39 -0.02 1.51 16 52 H 0.09 1.39 8.03 -2.39 -0.02 1.37 16 Total: -1.00 -76.30 412.74 1.00 -75.30 By element: Atomic # 1 Polarization: 36.91 SS G_CDS: -0.46 Total: 36.45 kcal Atomic # 6 Polarization: 12.97 SS G_CDS: 7.29 Total: 20.27 kcal Atomic # 7 Polarization: -107.98 SS G_CDS: -6.83 Total: -114.80 kcal Atomic # 8 Polarization: -60.68 SS G_CDS: -1.04 Total: -61.71 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -76.30 1.00 -75.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001324700737.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.368 kcal (2) G-P(sol) polarization free energy of solvation -76.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds