Wall clock time and date at job start Wed Apr 1 2020 00:40:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 H 1.09000 * 109.47019 * 55.00487 * 3 2 1 5 5 C 1.53002 * 109.46819 * 174.99960 * 3 2 1 6 6 N 1.46894 * 109.47240 * 295.00110 * 3 2 1 7 7 C 1.46899 * 111.00098 * 298.95386 * 6 3 2 8 8 C 1.46897 * 111.00121 * 175.00051 * 6 3 2 9 9 C 1.53000 * 109.47376 * 190.00101 * 8 6 3 10 10 N 1.46506 * 109.47195 * 180.02562 * 9 8 6 11 11 C 1.34777 * 119.99846 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.49449 * 119.99831 * 180.02562 * 11 10 9 14 14 O 1.21349 * 119.99754 * 359.97438 * 13 11 10 15 15 N 1.34772 * 119.99933 * 180.02562 * 13 11 10 16 16 C 1.47021 * 125.64937 * 359.94885 * 15 13 11 17 17 C 1.54370 * 107.28813 * 181.13182 * 16 15 13 18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15 19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16 20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16 21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17 22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.47423 * 125.64837 * 179.97438 * 15 13 11 29 29 H 1.09001 * 109.47520 * 299.99480 * 1 2 3 30 30 H 1.09000 * 109.47992 * 60.00163 * 1 2 3 31 31 H 1.09010 * 109.46858 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47520 * 240.00519 * 2 1 3 33 33 H 1.08997 * 109.47434 * 120.00307 * 2 1 3 34 34 H 1.09000 * 109.46912 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47378 * 300.00135 * 5 3 2 36 36 H 1.09000 * 109.46895 * 60.00451 * 5 3 2 37 37 H 1.09001 * 109.47566 * 296.04703 * 7 6 3 38 38 H 1.08997 * 109.46985 * 56.04617 * 7 6 3 39 39 H 1.09003 * 109.47094 * 176.04644 * 7 6 3 40 40 H 1.09002 * 109.47017 * 69.99917 * 8 6 3 41 41 H 1.09000 * 109.47338 * 310.00256 * 8 6 3 42 42 H 1.09002 * 109.47198 * 59.99927 * 9 8 6 43 43 H 1.08997 * 109.47249 * 299.99902 * 9 8 6 44 44 H 0.96999 * 119.99794 * 359.97438 * 10 9 8 45 45 H 1.09001 * 109.88518 * 300.52094 * 16 15 13 46 46 H 1.09002 * 109.88165 * 61.68403 * 16 15 13 47 47 H 1.09001 * 110.70699 * 263.79361 * 17 16 15 48 48 H 1.09008 * 110.75075 * 140.51110 * 17 16 15 49 49 H 0.96701 * 113.99475 * 183.17547 * 19 18 17 50 50 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 51 51 H 1.08996 * 110.36708 * 36.99367 * 28 15 13 52 52 H 1.08999 * 110.36888 * 274.67114 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6512 2.0993 -1.2552 7 6 2.2405 1.4133 -2.4127 8 6 2.0205 3.5210 -1.2417 9 6 1.3861 4.2242 -2.4434 10 7 1.7550 5.6420 -2.4303 11 6 1.3077 6.4636 -3.4006 12 8 0.6000 6.0289 -4.2852 13 6 1.6845 7.9098 -3.3875 14 8 2.3927 8.3443 -2.5031 15 7 1.2369 8.7315 -4.3575 16 6 0.3763 8.3394 -5.4832 17 6 0.1478 9.5987 -6.3463 18 6 1.3524 10.5009 -5.9694 19 8 2.5169 10.1380 -6.7141 20 6 1.0197 11.9572 -6.1684 21 1 0.0618 12.2411 -6.5788 22 6 1.9358 12.9274 -5.8210 23 7 3.1021 12.5816 -5.3213 24 14 1.5203 14.7327 -6.0605 25 1 0.1561 14.8548 -6.6343 26 1 1.5700 15.4301 -4.7504 27 1 2.5043 15.3485 -6.9867 28 6 1.5295 10.1723 -4.4657 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9280 2.4721 0.1262 35 1 3.8531 0.9571 1.0571 36 1 3.9993 0.9054 -0.7161 37 1 3.3267 1.4917 -2.3674 38 1 1.9512 0.3625 -2.3983 39 1 1.8808 1.8765 -3.3315 40 1 3.1051 3.6152 -1.2966 41 1 1.6621 3.9809 -0.3208 42 1 0.3015 4.1300 -2.3885 43 1 1.7445 3.7644 -3.3643 44 1 2.3210 5.9893 -1.7233 45 1 0.8694 7.5689 -6.0759 46 1 -0.5776 7.9681 -5.1087 47 1 -0.7931 10.0814 -6.0822 48 1 0.1699 9.3490 -7.4072 49 1 3.3076 10.6420 -6.4778 50 1 3.7467 13.2642 -5.0773 51 1 2.5529 10.3763 -4.1509 52 1 0.8253 10.7486 -3.8658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349213719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:16 Heat of formation + Delta-G solvation = -112.456698 kcal Electronic energy + Delta-G solvation = -30463.689375 eV Core-core repulsion = 26270.424717 eV Total energy + Delta-G solvation = -4193.264658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36074 -39.32424 -38.38221 -37.16863 -35.46436 -34.23478 -33.18828 -32.21989 -30.23224 -30.20511 -29.12470 -27.92228 -26.64934 -25.68539 -24.35018 -23.49042 -22.19702 -21.46798 -20.06265 -19.71911 -19.35386 -17.36432 -17.13655 -17.07394 -16.31241 -16.09125 -15.49160 -15.21144 -15.18343 -15.02215 -14.61387 -14.45579 -14.17225 -14.04272 -13.92898 -13.55301 -13.15903 -13.04885 -12.91058 -12.71164 -12.52705 -12.34835 -12.27746 -12.18804 -11.66030 -11.62254 -11.56883 -11.53327 -11.43795 -11.11531 -11.08454 -11.07380 -10.86920 -10.78073 -10.56524 -10.46984 -10.20589 -9.40009 -9.20985 -9.15045 -8.71263 -8.68523 -8.41949 -7.89803 -6.31615 -4.40792 1.80922 2.57088 3.18334 3.27422 3.31065 3.51244 3.61579 4.00867 4.24914 4.33085 4.48778 4.63923 4.70306 4.76343 4.81592 4.94789 4.96451 5.03993 5.12246 5.15443 5.25509 5.29108 5.40616 5.47497 5.49471 5.63577 5.65006 5.66150 5.70628 5.78913 5.80338 5.85139 5.89054 6.06031 6.07076 6.18860 6.34552 6.51285 6.65173 6.67465 6.73231 6.79009 6.84172 7.16016 7.24113 7.31117 7.71403 7.87556 7.98941 8.05536 8.44863 8.63687 9.28238 9.38954 10.75787 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.001899 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.981445 B =14737.241800 C =15094.537517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.079 3.921 4 H 0.084 0.916 5 C -0.190 4.190 6 N -0.527 5.527 7 C 0.010 3.990 8 C 0.042 3.958 9 C 0.123 3.877 10 N -0.709 5.709 11 C 0.511 3.489 12 O -0.515 6.515 13 C 0.508 3.492 14 O -0.539 6.539 15 N -0.573 5.573 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.582 6.582 20 C -0.536 4.536 21 H 0.069 0.931 22 C 0.070 3.930 23 N -0.895 5.895 24 Si 0.905 3.095 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.091 3.909 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.046 0.954 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.058 0.942 35 H 0.061 0.939 36 H 0.059 0.941 37 H 0.031 0.969 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.045 0.955 41 H 0.082 0.918 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.411 0.589 45 H 0.070 0.930 46 H 0.065 0.935 47 H 0.078 0.922 48 H 0.077 0.923 49 H 0.383 0.617 50 H 0.270 0.730 51 H 0.088 0.912 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.660 -21.960 10.064 24.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.155 4.155 3 C -0.029 4.029 4 H 0.102 0.898 5 C -0.249 4.249 6 N -0.251 5.251 7 C -0.138 4.138 8 C -0.087 4.087 9 C -0.001 4.001 10 N -0.364 5.364 11 C 0.292 3.708 12 O -0.390 6.390 13 C 0.290 3.710 14 O -0.419 6.419 15 N -0.305 5.305 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.207 3.793 19 O -0.391 6.391 20 C -0.574 4.574 21 H 0.087 0.913 22 C -0.133 4.133 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.195 1.195 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.030 4.030 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.050 0.950 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.063 0.937 41 H 0.101 0.899 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.246 0.754 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.234 0.766 50 H 0.080 0.920 51 H 0.107 0.893 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -2.562 -22.471 9.673 24.599 hybrid contribution 1.500 1.555 0.697 2.270 sum -1.062 -20.916 10.370 23.370 Atomic orbital electron populations 1.21677 0.95016 1.00922 1.02702 1.21629 0.96992 0.94958 1.01896 1.21803 0.93306 0.95652 0.92129 0.89787 1.22500 0.97554 1.02305 1.02502 1.62085 1.58989 1.01263 1.02768 1.22591 0.97451 1.00002 0.93727 1.22264 0.98602 0.88891 0.98902 1.21334 1.01066 0.79365 0.98354 1.45637 1.52768 1.09136 1.28813 1.20379 0.80683 0.87648 0.82040 1.90733 1.35852 1.77159 1.35238 1.19557 0.82347 0.86153 0.82961 1.90719 1.38039 1.76833 1.36269 1.48648 1.46832 1.11404 1.23641 1.22156 0.93584 0.97988 0.87392 1.22726 0.99298 0.94514 0.99433 1.19640 0.82900 0.91993 0.84728 1.86111 1.21571 1.66077 1.65325 1.21528 1.02592 0.89949 1.43336 0.91272 1.25100 0.94774 1.00048 0.93406 1.69661 1.06764 1.34509 1.42431 0.86323 0.78699 0.83787 0.77947 1.19530 1.20783 1.20735 1.23503 1.02508 0.75303 1.01664 0.93083 0.91390 0.93463 0.91708 0.91798 0.92338 0.91949 0.92175 0.95043 0.90803 0.90904 0.93651 0.89915 0.90220 0.91111 0.75357 0.91170 0.91707 0.90358 0.90485 0.76606 0.91969 0.89322 0.91411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.80 37.15 0.36 -0.56 16 2 C -0.12 -0.68 5.22 -26.73 -0.14 -0.82 16 3 C 0.08 0.51 2.34 -67.71 -0.16 0.35 16 4 H 0.08 0.56 8.03 -51.93 -0.42 0.14 16 5 C -0.19 -1.14 8.50 37.16 0.32 -0.83 16 6 N -0.53 -3.96 4.20 -234.89 -0.99 -4.94 16 7 C 0.01 0.07 8.52 60.06 0.51 0.58 16 8 C 0.04 0.34 4.51 -3.83 -0.02 0.32 16 9 C 0.12 1.28 5.60 -4.04 -0.02 1.26 16 10 N -0.71 -9.17 5.55 -60.73 -0.34 -9.51 16 11 C 0.51 8.69 7.86 -11.58 -0.09 8.60 16 12 O -0.52 -9.46 14.12 5.50 0.08 -9.38 16 13 C 0.51 10.23 7.91 -11.59 -0.09 10.14 16 14 O -0.54 -11.76 16.73 5.50 0.09 -11.67 16 15 N -0.57 -12.22 3.33 -170.99 -0.57 -12.79 16 16 C 0.11 2.17 5.49 -3.04 -0.02 2.15 16 17 C -0.12 -2.49 6.13 -24.88 -0.15 -2.64 16 18 C 0.25 6.00 0.88 -89.61 -0.08 5.92 16 19 O -0.58 -14.89 13.17 -35.23 -0.46 -15.35 16 20 C -0.54 -13.78 8.26 -34.44 -0.28 -14.07 16 21 H 0.07 1.75 7.78 -52.49 -0.41 1.34 16 22 C 0.07 1.79 5.29 -17.82 -0.09 1.70 16 23 N -0.89 -23.49 10.69 55.43 0.59 -22.90 16 24 Si 0.91 20.12 29.54 -169.99 -5.02 15.10 16 25 H -0.27 -5.95 7.11 56.52 0.40 -5.55 16 26 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 27 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 28 C 0.09 2.16 5.50 -2.52 -0.01 2.15 16 29 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.51 7.75 -51.93 -0.40 0.11 16 31 H 0.05 0.27 8.14 -51.92 -0.42 -0.15 16 32 H 0.06 0.37 6.09 -51.93 -0.32 0.06 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.38 6.75 -51.93 -0.35 0.03 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.37 6.47 -51.93 -0.34 0.04 16 37 H 0.03 0.22 6.51 -51.93 -0.34 -0.12 16 38 H 0.07 0.46 6.03 -51.93 -0.31 0.15 16 39 H 0.07 0.56 6.47 -51.93 -0.34 0.22 16 40 H 0.05 0.36 6.94 -51.93 -0.36 0.00 16 41 H 0.08 0.63 8.00 -51.93 -0.42 0.21 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.78 6.55 -51.93 -0.34 0.44 16 44 H 0.41 4.85 7.94 -40.82 -0.32 4.52 16 45 H 0.07 1.38 7.58 -51.93 -0.39 0.99 16 46 H 0.06 1.16 7.70 -51.93 -0.40 0.76 16 47 H 0.08 1.49 8.03 -51.93 -0.42 1.07 16 48 H 0.08 1.51 8.14 -51.92 -0.42 1.09 16 49 H 0.38 10.02 7.26 45.56 0.33 10.36 16 50 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 51 H 0.09 2.33 7.47 -51.93 -0.39 1.94 16 52 H 0.07 1.63 8.03 -51.93 -0.42 1.21 16 LS Contribution 405.02 15.07 6.10 6.10 Total: -1.00 -28.81 405.02 -8.50 -37.30 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -8.01 Total: 13.76 kcal Atomic # 6 Polarization: 14.23 SS G_CDS: 0.03 Total: 14.27 kcal Atomic # 7 Polarization: -48.83 SS G_CDS: -1.30 Total: -50.13 kcal Atomic # 8 Polarization: -36.10 SS G_CDS: -0.29 Total: -36.39 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.81 -8.50 -37.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349213719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.153 kcal (2) G-P(sol) polarization free energy of solvation -28.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds