Wall clock time and date at job start Wed Apr 1 2020 00:40:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.46816 * 2 1 4 4 H 1.09000 * 109.47019 * 55.00487 * 3 2 1 5 5 C 1.53002 * 109.46819 * 174.99960 * 3 2 1 6 6 N 1.46894 * 109.47240 * 295.00110 * 3 2 1 7 7 C 1.46899 * 111.00098 * 298.95386 * 6 3 2 8 8 C 1.46897 * 111.00121 * 175.00051 * 6 3 2 9 9 C 1.53000 * 109.47376 * 190.00101 * 8 6 3 10 10 N 1.46506 * 109.47195 * 180.02562 * 9 8 6 11 11 C 1.34777 * 119.99846 * 179.97438 * 10 9 8 12 12 O 1.21350 * 119.99865 * 359.97438 * 11 10 9 13 13 C 1.49449 * 119.99831 * 180.02562 * 11 10 9 14 14 O 1.21349 * 119.99754 * 359.97438 * 13 11 10 15 15 N 1.34772 * 119.99933 * 180.02562 * 13 11 10 16 16 C 1.47021 * 125.64937 * 359.94885 * 15 13 11 17 17 C 1.54370 * 107.28813 * 181.13182 * 16 15 13 18 18 C 1.55147 * 102.92092 * 22.14333 * 17 16 15 19 19 O 1.42905 * 111.00578 * 82.63751 * 18 17 16 20 20 C 1.50702 * 111.00308 * 206.45025 * 18 17 16 21 21 H 1.08002 * 120.00299 * 356.82421 * 20 18 17 22 22 C 1.37884 * 119.99942 * 176.53980 * 20 18 17 23 23 N 1.31514 * 119.99698 * 0.28408 * 22 20 18 24 24 Si 1.86794 * 119.99837 * 180.27476 * 22 20 18 25 25 H 1.48496 * 109.47341 * 0.02562 * 24 22 20 26 26 H 1.48508 * 109.46983 * 120.00379 * 24 22 20 27 27 H 1.48503 * 109.47491 * 240.00192 * 24 22 20 28 28 C 1.47423 * 125.64837 * 179.97438 * 15 13 11 29 29 H 1.09001 * 109.47520 * 299.99480 * 1 2 3 30 30 H 1.09000 * 109.47992 * 60.00163 * 1 2 3 31 31 H 1.09010 * 109.46858 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47520 * 240.00519 * 2 1 3 33 33 H 1.08997 * 109.47434 * 120.00307 * 2 1 3 34 34 H 1.09000 * 109.46912 * 180.02562 * 5 3 2 35 35 H 1.08998 * 109.47378 * 300.00135 * 5 3 2 36 36 H 1.09000 * 109.46895 * 60.00451 * 5 3 2 37 37 H 1.09001 * 109.47566 * 296.04703 * 7 6 3 38 38 H 1.08997 * 109.46985 * 56.04617 * 7 6 3 39 39 H 1.09003 * 109.47094 * 176.04644 * 7 6 3 40 40 H 1.09002 * 109.47017 * 69.99917 * 8 6 3 41 41 H 1.09000 * 109.47338 * 310.00256 * 8 6 3 42 42 H 1.09002 * 109.47198 * 59.99927 * 9 8 6 43 43 H 1.08997 * 109.47249 * 299.99902 * 9 8 6 44 44 H 0.96999 * 119.99794 * 359.97438 * 10 9 8 45 45 H 1.09001 * 109.88518 * 300.52094 * 16 15 13 46 46 H 1.09002 * 109.88165 * 61.68403 * 16 15 13 47 47 H 1.09001 * 110.70699 * 263.79361 * 17 16 15 48 48 H 1.09008 * 110.75075 * 140.51110 * 17 16 15 49 49 H 0.96701 * 113.99475 * 183.17547 * 19 18 17 50 50 H 0.97005 * 119.99651 * 179.97438 * 23 22 20 51 51 H 1.08996 * 110.36708 * 36.99367 * 28 15 13 52 52 H 1.08999 * 110.36888 * 274.67114 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9815 0.8419 5 6 3.5647 1.4444 0.1257 6 7 1.6512 2.0993 -1.2552 7 6 2.2405 1.4133 -2.4127 8 6 2.0205 3.5210 -1.2417 9 6 1.3861 4.2242 -2.4434 10 7 1.7550 5.6420 -2.4303 11 6 1.3077 6.4636 -3.4006 12 8 0.6000 6.0289 -4.2852 13 6 1.6845 7.9098 -3.3875 14 8 2.3927 8.3443 -2.5031 15 7 1.2369 8.7315 -4.3575 16 6 0.3763 8.3394 -5.4832 17 6 0.1478 9.5987 -6.3463 18 6 1.3524 10.5009 -5.9694 19 8 2.5169 10.1380 -6.7141 20 6 1.0197 11.9572 -6.1684 21 1 0.0618 12.2411 -6.5788 22 6 1.9358 12.9274 -5.8210 23 7 3.1021 12.5816 -5.3213 24 14 1.5203 14.7327 -6.0605 25 1 0.1561 14.8548 -6.6343 26 1 1.5700 15.4301 -4.7504 27 1 2.5043 15.3485 -6.9867 28 6 1.5295 10.1723 -4.4657 29 1 -0.3634 0.5137 0.8900 30 1 -0.3635 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.9280 2.4721 0.1262 35 1 3.8531 0.9571 1.0571 36 1 3.9993 0.9054 -0.7161 37 1 3.3267 1.4917 -2.3674 38 1 1.9512 0.3625 -2.3983 39 1 1.8808 1.8765 -3.3315 40 1 3.1051 3.6152 -1.2966 41 1 1.6621 3.9809 -0.3208 42 1 0.3015 4.1300 -2.3885 43 1 1.7445 3.7644 -3.3643 44 1 2.3210 5.9893 -1.7233 45 1 0.8694 7.5689 -6.0759 46 1 -0.5776 7.9681 -5.1087 47 1 -0.7931 10.0814 -6.0822 48 1 0.1699 9.3490 -7.4072 49 1 3.3076 10.6420 -6.4778 50 1 3.7467 13.2642 -5.0773 51 1 2.5529 10.3763 -4.1509 52 1 0.8253 10.7486 -3.8658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349213719.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:15 Heat of formation + Delta-G solvation = -134.178698 kcal Electronic energy + Delta-G solvation = -30464.631312 eV Core-core repulsion = 26270.424717 eV Total energy + Delta-G solvation = -4194.206595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.82530 -40.23308 -39.65251 -38.87207 -36.65325 -35.88487 -34.20894 -33.92014 -31.96065 -30.80113 -29.93919 -29.66162 -27.78959 -27.00987 -25.45152 -24.56252 -23.37790 -22.53416 -21.56175 -21.01008 -20.33642 -19.18677 -18.73988 -18.12246 -17.47492 -17.35151 -17.06875 -16.58890 -16.36346 -16.28796 -15.78520 -15.65421 -15.29382 -14.98199 -14.84381 -14.68575 -14.56048 -14.49061 -14.20020 -13.96521 -13.66703 -13.51547 -13.33358 -13.07307 -12.91765 -12.87038 -12.81475 -12.69551 -12.53690 -12.34857 -12.24044 -12.19721 -12.11633 -12.08162 -12.06903 -11.58694 -11.36920 -11.23893 -10.76571 -10.59646 -10.36686 -10.31067 -9.64758 -9.25863 -8.26322 -6.42766 0.32702 1.22583 1.42667 1.46181 1.56816 2.10681 2.35653 2.44527 2.99519 3.01283 3.36073 3.75226 3.77289 3.88765 3.99400 4.06620 4.14665 4.15454 4.30982 4.32371 4.37802 4.48218 4.54320 4.58855 4.65211 4.71640 4.73011 4.79114 4.81752 4.86654 4.95663 4.96697 5.02908 5.05773 5.10602 5.14704 5.16937 5.23268 5.26429 5.33377 5.40574 5.43068 5.56535 5.74643 5.94903 6.04487 6.05827 6.13524 6.36069 6.60668 6.67312 6.90641 7.27999 7.35695 8.79847 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.030036 B = 0.001899 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 931.981445 B =14737.241800 C =15094.537517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.186 4.186 6 N -0.533 5.533 7 C 0.011 3.989 8 C 0.050 3.950 9 C 0.126 3.874 10 N -0.688 5.688 11 C 0.518 3.482 12 O -0.529 6.529 13 C 0.502 3.498 14 O -0.561 6.561 15 N -0.582 5.582 16 C 0.119 3.881 17 C -0.116 4.116 18 C 0.232 3.768 19 O -0.589 6.589 20 C -0.554 4.554 21 H 0.071 0.929 22 C 0.027 3.973 23 N -0.916 5.916 24 Si 0.966 3.034 25 H -0.264 1.264 26 H -0.281 1.281 27 H -0.281 1.281 28 C 0.105 3.895 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.074 0.926 34 H 0.052 0.948 35 H 0.070 0.930 36 H 0.058 0.942 37 H 0.033 0.967 38 H 0.081 0.919 39 H 0.065 0.935 40 H 0.050 0.950 41 H 0.090 0.910 42 H 0.076 0.924 43 H 0.069 0.931 44 H 0.418 0.582 45 H 0.069 0.931 46 H 0.085 0.915 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.376 0.624 50 H 0.271 0.729 51 H 0.056 0.944 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.379 -23.172 10.593 25.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.152 4.152 3 C -0.028 4.028 4 H 0.102 0.898 5 C -0.245 4.245 6 N -0.257 5.257 7 C -0.137 4.137 8 C -0.079 4.079 9 C 0.003 3.997 10 N -0.342 5.342 11 C 0.298 3.702 12 O -0.406 6.406 13 C 0.285 3.715 14 O -0.441 6.441 15 N -0.314 5.314 16 C -0.003 4.003 17 C -0.153 4.153 18 C 0.192 3.808 19 O -0.397 6.397 20 C -0.592 4.592 21 H 0.089 0.911 22 C -0.174 4.174 23 N -0.555 5.555 24 Si 0.792 3.208 25 H -0.188 1.188 26 H -0.207 1.207 27 H -0.207 1.207 28 C -0.017 4.017 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.071 0.929 35 H 0.089 0.911 36 H 0.077 0.923 37 H 0.051 0.949 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.068 0.932 41 H 0.108 0.892 42 H 0.094 0.906 43 H 0.088 0.912 44 H 0.255 0.745 45 H 0.087 0.913 46 H 0.103 0.897 47 H 0.112 0.888 48 H 0.104 0.896 49 H 0.226 0.774 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -3.285 -23.729 10.222 26.046 hybrid contribution 1.752 1.863 0.587 2.624 sum -1.533 -21.866 10.809 24.440 Atomic orbital electron populations 1.21642 0.95434 1.01056 1.01935 1.21616 0.96525 0.94578 1.02451 1.21835 0.93638 0.95909 0.91456 0.89824 1.22460 0.97084 1.02038 1.02896 1.62078 1.59298 1.00927 1.03437 1.22590 0.97502 1.00375 0.93236 1.22166 0.98592 0.89230 0.97895 1.21457 1.01025 0.77628 0.99588 1.45593 1.51396 1.09773 1.27474 1.19736 0.81154 0.86344 0.82946 1.90728 1.36878 1.76871 1.36077 1.20216 0.81551 0.87578 0.82119 1.90698 1.38806 1.77661 1.36969 1.48692 1.47517 1.10587 1.24616 1.22170 0.94100 0.97328 0.86668 1.22740 0.98197 0.94173 1.00217 1.19880 0.83530 0.92507 0.84912 1.86104 1.21816 1.66033 1.65754 1.21809 1.02807 0.91019 1.43571 0.91081 1.25828 0.94690 1.03777 0.93128 1.69765 1.07417 1.35515 1.42841 0.85373 0.78599 0.79174 0.77672 1.18842 1.20735 1.20656 1.23081 1.00201 0.77082 1.01349 0.93213 0.92725 0.92920 0.91587 0.90787 0.92866 0.91131 0.92300 0.94864 0.89997 0.91632 0.93213 0.89169 0.90589 0.91233 0.74519 0.91292 0.89659 0.88848 0.89639 0.77420 0.91967 0.92567 0.92341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.80 71.98 0.71 -0.90 16 2 C -0.11 -1.11 5.22 30.59 0.16 -0.95 16 3 C 0.08 0.88 2.34 44.92 0.11 0.99 16 4 H 0.08 0.95 8.03 -2.39 -0.02 0.93 16 5 C -0.19 -1.89 8.50 71.98 0.61 -1.28 16 6 N -0.53 -7.14 4.20 -897.06 -3.77 -10.91 16 7 C 0.01 0.14 8.52 127.69 1.09 1.22 16 8 C 0.05 0.71 4.51 86.30 0.39 1.10 16 9 C 0.13 2.44 5.60 86.38 0.48 2.93 16 10 N -0.69 -16.89 5.55 -464.40 -2.58 -19.46 16 11 C 0.52 17.08 7.86 87.27 0.69 17.77 16 12 O -0.53 -18.70 14.12 -3.25 -0.05 -18.75 16 13 C 0.50 20.16 7.91 87.27 0.69 20.85 16 14 O -0.56 -24.64 16.73 -3.24 -0.05 -24.70 16 15 N -0.58 -24.80 3.33 -813.24 -2.70 -27.51 16 16 C 0.12 4.51 5.49 86.75 0.48 4.99 16 17 C -0.12 -4.60 6.13 31.80 0.19 -4.41 16 18 C 0.23 11.30 0.88 -10.14 -0.01 11.29 16 19 O -0.59 -30.59 13.17 -148.98 -1.96 -32.55 16 20 C -0.55 -28.51 8.26 25.60 0.21 -28.30 16 21 H 0.07 3.54 7.78 -2.91 -0.02 3.52 16 22 C 0.03 1.37 5.29 84.66 0.45 1.82 16 23 N -0.92 -48.92 10.69 21.45 0.23 -48.69 16 24 Si 0.97 41.17 29.54 68.60 2.03 43.20 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 27 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 28 C 0.10 5.09 5.50 86.86 0.48 5.57 16 29 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.05 0.76 7.75 -2.39 -0.02 0.74 16 31 H 0.05 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.07 0.64 6.09 -2.39 -0.01 0.62 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.60 6.75 -2.39 -0.02 0.59 16 35 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.06 0.62 6.47 -2.39 -0.02 0.60 16 37 H 0.03 0.41 6.51 -2.39 -0.02 0.39 16 38 H 0.08 0.90 6.03 -2.39 -0.01 0.88 16 39 H 0.06 0.92 6.47 -2.39 -0.02 0.91 16 40 H 0.05 0.69 6.94 -2.39 -0.02 0.67 16 41 H 0.09 1.18 8.00 -2.39 -0.02 1.16 16 42 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 43 H 0.07 1.43 6.55 -2.39 -0.02 1.41 16 44 H 0.42 9.28 7.94 -92.71 -0.74 8.55 16 45 H 0.07 2.64 7.58 -2.39 -0.02 2.62 16 46 H 0.09 2.89 7.70 -2.39 -0.02 2.87 16 47 H 0.09 3.41 8.03 -2.39 -0.02 3.39 16 48 H 0.09 3.24 8.14 -2.38 -0.02 3.22 16 49 H 0.38 20.29 7.26 -74.06 -0.54 19.75 16 50 H 0.27 13.81 8.31 -92.70 -0.77 13.04 16 51 H 0.06 3.06 7.47 -2.39 -0.02 3.05 16 52 H 0.06 2.88 8.03 -2.39 -0.02 2.86 16 Total: -1.00 -61.17 405.02 -2.48 -63.65 By element: Atomic # 1 Polarization: 43.38 SS G_CDS: -0.34 Total: 43.04 kcal Atomic # 6 Polarization: 25.96 SS G_CDS: 6.72 Total: 32.68 kcal Atomic # 7 Polarization: -97.75 SS G_CDS: -8.82 Total: -106.57 kcal Atomic # 8 Polarization: -73.93 SS G_CDS: -2.06 Total: -76.00 kcal Atomic # 14 Polarization: 41.17 SS G_CDS: 2.03 Total: 43.20 kcal Total: -61.17 -2.48 -63.65 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349213719.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.529 kcal (2) G-P(sol) polarization free energy of solvation -61.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.650 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds