Wall clock time and date at job start Wed Apr 1 2020 00:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52996 * 109.47062 * 2 1 4 4 H 1.09001 * 109.47585 * 55.49557 * 3 2 1 5 5 C 1.53005 * 109.46966 * 175.49519 * 3 2 1 6 6 N 1.46904 * 109.47378 * 295.49358 * 3 2 1 7 7 C 1.46907 * 110.99790 * 169.04480 * 6 3 2 8 8 C 1.46895 * 110.99697 * 292.99501 * 6 3 2 9 9 C 1.53005 * 109.46710 * 170.00074 * 8 6 3 10 10 N 1.46507 * 109.46833 * 180.02562 * 9 8 6 11 11 C 1.34773 * 119.99643 * 180.02562 * 10 9 8 12 12 O 1.21351 * 120.00587 * 359.97438 * 11 10 9 13 13 C 1.49451 * 120.00026 * 180.02562 * 11 10 9 14 14 O 1.21350 * 119.99995 * 359.97438 * 13 11 10 15 15 N 1.34775 * 120.00331 * 179.97438 * 13 11 10 16 16 C 1.47023 * 125.64504 * 359.68840 * 15 13 11 17 17 C 1.54337 * 107.26183 * 178.85038 * 16 15 13 18 18 C 1.55155 * 103.02221 * 338.14312 * 17 16 15 19 19 O 1.42905 * 111.00299 * 277.23157 * 18 17 16 20 20 C 1.50693 * 111.03744 * 153.39955 * 18 17 16 21 21 H 1.08007 * 120.00174 * 6.32432 * 20 18 17 22 22 C 1.37875 * 120.00119 * 186.32988 * 20 18 17 23 23 N 1.31514 * 119.99937 * 359.97438 * 22 20 18 24 24 Si 1.86807 * 120.00320 * 179.97438 * 22 20 18 25 25 H 1.48500 * 109.46890 * 90.00231 * 24 22 20 26 26 H 1.48492 * 109.47143 * 210.00133 * 24 22 20 27 27 H 1.48501 * 109.46727 * 330.00293 * 24 22 20 28 28 C 1.47425 * 125.64833 * 180.02562 * 15 13 11 29 29 H 1.09005 * 109.47498 * 295.23265 * 1 2 3 30 30 H 1.09003 * 109.47423 * 55.22674 * 1 2 3 31 31 H 1.09003 * 109.47681 * 175.22965 * 1 2 3 32 32 H 1.09004 * 109.46922 * 240.00630 * 2 1 3 33 33 H 1.08999 * 109.47202 * 120.00562 * 2 1 3 34 34 H 1.08993 * 109.47101 * 59.99927 * 5 3 2 35 35 H 1.09004 * 109.47042 * 180.02562 * 5 3 2 36 36 H 1.09002 * 109.46674 * 300.00006 * 5 3 2 37 37 H 1.08997 * 109.46727 * 181.93835 * 7 6 3 38 38 H 1.08996 * 109.46890 * 61.93419 * 7 6 3 39 39 H 1.09000 * 109.46680 * 301.93172 * 7 6 3 40 40 H 1.09006 * 109.47750 * 290.00078 * 8 6 3 41 41 H 1.08994 * 109.47567 * 50.00275 * 8 6 3 42 42 H 1.08998 * 109.47160 * 299.99792 * 9 8 6 43 43 H 1.09001 * 109.47331 * 60.00368 * 9 8 6 44 44 H 0.96996 * 120.00175 * 359.97438 * 10 9 8 45 45 H 1.09000 * 109.88421 * 298.39447 * 16 15 13 46 46 H 1.09003 * 109.88383 * 59.56602 * 16 15 13 47 47 H 1.09007 * 110.84905 * 219.67372 * 17 16 15 48 48 H 1.09002 * 110.51468 * 96.45509 * 17 16 15 49 49 H 0.96696 * 114.00332 * 173.65156 * 19 18 17 50 50 H 0.96999 * 120.00044 * 179.97438 * 23 22 20 51 51 H 1.08997 * 110.36710 * 322.92651 * 28 15 13 52 52 H 1.08994 * 110.36822 * 85.14787 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6122 1.9791 0.8469 5 6 3.5658 1.4439 0.1133 6 7 1.6411 2.1029 -1.2501 7 6 1.8817 3.5505 -1.1808 8 6 2.3318 1.5091 -2.4027 9 6 1.7152 2.0430 -3.6972 10 7 2.4035 1.4504 -4.8466 11 6 2.0277 1.7771 -6.0990 12 8 1.1188 2.5618 -6.2746 13 6 2.7295 1.1721 -7.2716 14 8 3.6380 0.3871 -7.0962 15 7 2.3533 1.4984 -8.5240 16 6 1.2695 2.4264 -8.8787 17 6 1.2240 2.5100 -10.4192 18 6 2.6474 2.0546 -10.8362 19 8 3.5757 3.1381 -10.7566 20 6 2.6400 1.4541 -12.2183 21 1 1.7397 1.4818 -12.8144 22 6 3.7824 0.8692 -12.7220 23 7 4.8788 0.8358 -11.9964 24 14 3.7731 0.1241 -14.4350 25 1 4.1640 1.1581 -15.4266 26 1 4.7375 -1.0037 -14.4895 27 1 2.4102 -0.3742 -14.7505 28 6 2.9558 0.9786 -9.7650 29 1 -0.3634 0.4381 0.9296 30 1 -0.3634 0.5861 -0.8441 31 1 -0.3634 -1.0241 -0.0855 32 1 1.8933 -0.5138 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 3.9935 0.9073 -0.7335 35 1 3.9291 2.4716 0.1138 36 1 3.8616 0.9539 1.0409 37 1 1.5460 4.0193 -2.1057 38 1 2.9473 3.7355 -1.0454 39 1 1.3302 3.9705 -0.3396 40 1 3.3890 1.7726 -2.3681 41 1 2.2264 0.4248 -2.3703 42 1 0.6581 1.7795 -3.7318 43 1 1.8206 3.1274 -3.7296 44 1 3.1302 0.8234 -4.7064 45 1 0.3200 2.0505 -8.4977 46 1 1.4745 3.4125 -8.4618 47 1 1.0347 3.5323 -10.7468 48 1 0.4699 1.8306 -10.8165 49 1 4.4946 2.8812 -10.9135 50 1 5.6824 0.4240 -12.3506 51 1 4.0327 0.8617 -9.6439 52 1 2.5000 0.0270 -10.0384 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349213721.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:19 Heat of formation + Delta-G solvation = -112.638601 kcal Electronic energy + Delta-G solvation = -30654.313483 eV Core-core repulsion = 26461.040937 eV Total energy + Delta-G solvation = -4193.272546 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.36525 -39.33391 -38.36494 -37.16727 -35.33411 -34.19350 -33.29361 -32.25502 -30.31265 -30.21551 -29.18007 -27.90068 -26.40605 -25.64063 -24.25327 -23.40242 -22.55056 -21.52813 -20.19212 -19.68659 -19.16343 -17.39841 -17.12011 -16.77841 -16.41293 -15.99035 -15.68611 -15.35260 -15.10704 -14.87579 -14.58732 -14.48499 -14.09179 -14.04375 -13.92227 -13.58177 -13.17824 -13.04771 -12.90892 -12.77260 -12.54907 -12.27517 -12.22414 -12.07580 -11.89740 -11.66521 -11.56792 -11.51455 -11.33289 -11.11284 -11.05740 -11.04357 -10.82212 -10.79503 -10.57234 -10.47611 -10.21499 -9.38317 -9.20623 -9.14362 -8.70998 -8.68672 -8.40998 -7.90326 -6.30284 -4.39716 1.81196 2.57795 3.20092 3.27698 3.30240 3.51693 3.61808 4.00132 4.25562 4.34860 4.48289 4.65536 4.72159 4.77609 4.81263 4.95981 4.97538 5.03445 5.12441 5.20720 5.23793 5.31306 5.39246 5.49610 5.56571 5.59586 5.63109 5.72563 5.75804 5.76500 5.80077 5.83637 5.89701 6.06141 6.11361 6.19546 6.34541 6.51963 6.65135 6.67818 6.73290 6.79918 6.84958 7.16321 7.24162 7.31720 7.71732 7.88099 8.00500 8.06001 8.45283 8.64571 9.27618 9.36166 10.76945 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025289 B = 0.002008 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.919613 B =13939.308799 C =14188.857867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.080 3.920 4 H 0.084 0.916 5 C -0.189 4.189 6 N -0.528 5.528 7 C 0.016 3.984 8 C 0.037 3.963 9 C 0.122 3.878 10 N -0.708 5.708 11 C 0.511 3.489 12 O -0.515 6.515 13 C 0.508 3.492 14 O -0.539 6.539 15 N -0.574 5.574 16 C 0.111 3.889 17 C -0.122 4.122 18 C 0.248 3.752 19 O -0.581 6.581 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.070 3.930 23 N -0.894 5.894 24 Si 0.905 3.095 25 H -0.278 1.278 26 H -0.285 1.285 27 H -0.272 1.272 28 C 0.092 3.908 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.056 0.944 36 H 0.062 0.938 37 H 0.074 0.926 38 H 0.029 0.971 39 H 0.069 0.931 40 H 0.046 0.954 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.070 0.930 44 H 0.410 0.590 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.076 0.924 48 H 0.078 0.922 49 H 0.381 0.619 50 H 0.270 0.730 51 H 0.091 0.909 52 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.074 0.724 23.079 23.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.155 4.155 3 C -0.028 4.028 4 H 0.102 0.898 5 C -0.248 4.248 6 N -0.251 5.251 7 C -0.132 4.132 8 C -0.091 4.091 9 C -0.002 4.002 10 N -0.363 5.363 11 C 0.292 3.708 12 O -0.390 6.390 13 C 0.290 3.710 14 O -0.418 6.418 15 N -0.306 5.306 16 C -0.011 4.011 17 C -0.160 4.160 18 C 0.208 3.792 19 O -0.390 6.390 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.133 4.133 23 N -0.532 5.532 24 Si 0.732 3.268 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.197 1.197 28 C -0.029 4.029 29 H 0.067 0.933 30 H 0.088 0.912 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.092 0.908 38 H 0.048 0.952 39 H 0.088 0.912 40 H 0.064 0.936 41 H 0.104 0.896 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.246 0.754 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.095 0.905 48 H 0.096 0.904 49 H 0.230 0.770 50 H 0.080 0.920 51 H 0.109 0.891 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -6.124 1.079 23.171 23.991 hybrid contribution 1.887 -0.926 -0.729 2.224 sum -4.237 0.154 22.443 22.840 Atomic orbital electron populations 1.21680 0.95041 1.01254 1.02389 1.21616 0.97015 0.94982 1.01897 1.21786 0.93266 0.95774 0.91989 0.89790 1.22499 0.97471 1.02168 1.02677 1.62078 1.57260 1.03620 1.02188 1.22513 0.99596 0.87967 1.03143 1.22334 0.96371 1.00608 0.89792 1.21344 0.97422 0.98235 0.83150 1.45635 1.38298 1.47555 1.04843 1.20382 0.83833 0.82164 0.84380 1.90733 1.29038 1.33609 1.85615 1.19557 0.84597 0.83468 0.83412 1.90721 1.30323 1.35745 1.85046 1.48666 1.34108 1.42550 1.05248 1.22154 0.89145 0.93251 0.96598 1.22717 0.98685 1.02218 0.92332 1.19646 0.85005 0.82914 0.91673 1.86132 1.21332 1.37023 1.94464 1.21461 0.98049 1.37986 0.99916 0.91369 1.25094 0.95278 0.94736 0.98191 1.69709 1.01755 1.44511 1.37271 0.86384 0.78117 0.78732 0.83572 1.20380 1.21029 1.19666 1.23492 0.99901 0.98756 0.80734 0.93307 0.91208 0.93369 0.91756 0.91801 0.92040 0.92463 0.91930 0.90778 0.95203 0.91219 0.93572 0.89578 0.90262 0.91130 0.75375 0.91705 0.91176 0.90504 0.90355 0.76961 0.91976 0.89103 0.91409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.85 37.16 0.37 -0.63 16 2 C -0.12 -0.75 5.35 -26.74 -0.14 -0.89 16 3 C 0.08 0.52 2.31 -67.71 -0.16 0.36 16 4 H 0.08 0.52 8.02 -51.93 -0.42 0.10 16 5 C -0.19 -1.15 8.44 37.16 0.31 -0.84 16 6 N -0.53 -3.96 4.06 -234.88 -0.95 -4.91 16 7 C 0.02 0.11 9.11 60.07 0.55 0.66 16 8 C 0.04 0.30 3.99 -3.82 -0.02 0.29 16 9 C 0.12 1.28 5.60 -4.04 -0.02 1.26 16 10 N -0.71 -9.17 5.55 -60.72 -0.34 -9.50 16 11 C 0.51 8.67 7.86 -11.59 -0.09 8.58 16 12 O -0.52 -9.44 14.12 5.50 0.08 -9.37 16 13 C 0.51 10.22 7.91 -11.59 -0.09 10.13 16 14 O -0.54 -11.75 16.73 5.50 0.09 -11.65 16 15 N -0.57 -12.20 3.33 -171.01 -0.57 -12.77 16 16 C 0.11 2.16 5.49 -3.06 -0.02 2.14 16 17 C -0.12 -2.49 6.13 -24.89 -0.15 -2.64 16 18 C 0.25 6.00 0.87 -89.62 -0.08 5.92 16 19 O -0.58 -14.78 13.16 -35.23 -0.46 -15.24 16 20 C -0.54 -13.79 8.27 -34.44 -0.28 -14.08 16 21 H 0.07 1.72 7.79 -52.48 -0.41 1.31 16 22 C 0.07 1.81 5.29 -17.82 -0.09 1.71 16 23 N -0.89 -23.48 10.69 55.43 0.59 -22.88 16 24 Si 0.90 20.14 29.54 -169.99 -5.02 15.12 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 27 H -0.27 -5.99 7.11 56.52 0.40 -5.58 16 28 C 0.09 2.18 5.38 -2.52 -0.01 2.17 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.57 7.61 -51.93 -0.40 0.17 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.06 0.44 6.22 -51.93 -0.32 0.12 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.41 6.55 -51.93 -0.34 0.07 16 35 H 0.06 0.36 6.77 -51.93 -0.35 0.01 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.56 6.38 -51.93 -0.33 0.22 16 38 H 0.03 0.20 6.74 -51.93 -0.35 -0.15 16 39 H 0.07 0.42 8.08 -51.93 -0.42 0.00 16 40 H 0.05 0.37 6.83 -51.93 -0.35 0.02 16 41 H 0.09 0.67 6.06 -51.93 -0.31 0.36 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.77 6.51 -51.93 -0.34 0.44 16 44 H 0.41 4.86 7.94 -40.82 -0.32 4.53 16 45 H 0.06 1.16 7.71 -51.93 -0.40 0.76 16 46 H 0.07 1.38 7.57 -51.93 -0.39 0.98 16 47 H 0.08 1.51 8.14 -51.92 -0.42 1.08 16 48 H 0.08 1.49 8.03 -51.93 -0.42 1.08 16 49 H 0.38 9.84 7.56 45.56 0.34 10.19 16 50 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 51 H 0.09 2.39 7.33 -51.93 -0.38 2.00 16 52 H 0.07 1.64 8.03 -51.93 -0.42 1.22 16 LS Contribution 405.25 15.07 6.11 6.11 Total: -1.00 -28.76 405.25 -8.41 -37.17 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.00 Total: 13.80 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: 0.07 Total: 14.14 kcal Atomic # 7 Polarization: -48.80 SS G_CDS: -1.27 Total: -50.07 kcal Atomic # 8 Polarization: -35.97 SS G_CDS: -0.29 Total: -36.26 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -5.02 Total: 15.12 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -28.76 -8.41 -37.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349213721.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.466 kcal (2) G-P(sol) polarization free energy of solvation -28.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds