Wall clock time and date at job start Wed Apr 1 2020 00:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46785 * 304.99185 * 3 2 1 5 5 C 1.53002 * 109.47068 * 184.99596 * 3 2 1 6 6 N 1.46900 * 109.47358 * 64.99980 * 3 2 1 7 7 C 1.46891 * 111.00120 * 66.04028 * 6 3 2 8 8 C 1.46898 * 110.99814 * 190.00032 * 6 3 2 9 9 C 1.53006 * 109.47006 * 169.99400 * 8 6 3 10 10 N 1.46496 * 109.46995 * 179.97438 * 9 8 6 11 11 C 1.34775 * 119.99642 * 180.02562 * 10 9 8 12 12 O 1.21345 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.49455 * 119.99874 * 180.02562 * 11 10 9 14 14 O 1.21349 * 120.00217 * 359.97438 * 13 11 10 15 15 N 1.34775 * 119.99874 * 180.02562 * 13 11 10 16 16 C 1.47423 * 125.65281 * 359.68562 * 15 13 11 17 17 C 1.55130 * 104.72417 * 155.81745 * 16 15 13 18 18 C 1.55155 * 101.48530 * 37.29818 * 17 16 15 19 19 O 1.42899 * 110.71924 * 82.69058 * 18 17 16 20 20 C 1.50698 * 110.87573 * 205.89575 * 18 17 16 21 21 H 1.08006 * 119.99349 * 355.06691 * 20 18 17 22 22 C 1.37874 * 120.00279 * 175.06135 * 20 18 17 23 23 N 1.31511 * 120.00038 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00007 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47482 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47467 * 120.00247 * 24 22 20 27 27 H 1.48508 * 109.47334 * 240.00414 * 24 22 20 28 28 C 1.47024 * 125.64599 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.47795 * 300.00279 * 1 2 3 30 30 H 1.09007 * 109.46980 * 60.00878 * 1 2 3 31 31 H 1.08999 * 109.46759 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47795 * 239.99721 * 2 1 3 33 33 H 1.09004 * 109.47268 * 119.99555 * 2 1 3 34 34 H 1.09005 * 109.46995 * 300.00321 * 5 3 2 35 35 H 1.09005 * 109.47325 * 59.99697 * 5 3 2 36 36 H 1.08997 * 109.47238 * 179.97438 * 5 3 2 37 37 H 1.09008 * 109.47294 * 183.95307 * 7 6 3 38 38 H 1.08994 * 109.47718 * 303.95889 * 7 6 3 39 39 H 1.09007 * 109.47181 * 63.96365 * 7 6 3 40 40 H 1.09001 * 109.47062 * 49.99654 * 8 6 3 41 41 H 1.08993 * 109.47084 * 289.99101 * 8 6 3 42 42 H 1.09001 * 109.46801 * 300.00064 * 9 8 6 43 43 H 1.09001 * 109.46998 * 59.99660 * 9 8 6 44 44 H 0.96998 * 120.00192 * 359.97438 * 10 9 8 45 45 H 1.08997 * 110.36593 * 274.75439 * 16 15 13 46 46 H 1.09006 * 110.36320 * 37.07377 * 16 15 13 47 47 H 1.09000 * 111.19314 * 279.19183 * 17 16 15 48 48 H 1.08996 * 110.90380 * 155.27605 * 17 16 15 49 49 H 0.96704 * 114.00245 * 185.02149 * 19 18 17 50 50 H 0.97005 * 120.00427 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.88248 * 300.43487 * 28 15 13 52 52 H 1.08997 * 109.88483 * 61.44468 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 7 1.6513 2.0994 1.2552 7 6 2.3339 1.4873 2.4029 8 6 1.9123 3.5438 1.1963 9 6 1.2731 4.2273 2.4067 10 7 1.5340 5.6677 2.3483 11 6 1.0637 6.4775 3.3175 12 8 0.4239 6.0137 4.2384 13 6 1.3293 7.9471 3.2577 14 8 1.9688 8.4111 2.3366 15 7 0.8595 8.7568 4.2272 16 6 0.0675 8.3294 5.3949 17 6 0.3137 9.4283 6.4619 18 6 0.3605 10.7065 5.5837 19 8 -0.9596 11.1782 5.3066 20 6 1.1812 11.7831 6.2459 21 1 1.5727 11.6287 7.2406 22 6 1.4323 12.9651 5.5819 23 7 0.9553 13.1532 4.3709 24 14 2.4502 14.2992 6.4025 25 1 2.8665 13.8440 7.7533 26 1 3.6557 14.5777 5.5813 27 1 1.6381 15.5365 6.5251 28 6 1.0469 10.2136 4.2924 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.9054 0.7162 35 1 3.8533 0.9570 -1.0570 36 1 3.9281 2.4721 -0.1261 37 1 1.9758 1.9451 3.3251 38 1 2.1239 0.4180 2.4227 39 1 3.4087 1.6449 2.3127 40 1 1.4856 3.9530 0.2806 41 1 2.9880 3.7192 1.2060 42 1 0.1974 4.0518 2.3970 43 1 1.6998 3.8180 3.3224 44 1 2.0458 6.0385 1.6124 45 1 -0.9903 8.2775 5.1373 46 1 0.4183 7.3633 5.7580 47 1 1.2619 9.2726 6.9763 48 1 -0.5118 9.4724 7.1723 49 1 -0.9893 11.9296 4.6986 50 1 1.1316 13.9849 3.9039 51 1 2.1106 10.4495 4.3246 52 1 0.5889 10.6855 3.4232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001349213726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:28 Heat of formation + Delta-G solvation = -111.717725 kcal Electronic energy + Delta-G solvation = -30426.212942 eV Core-core repulsion = 26232.980328 eV Total energy + Delta-G solvation = -4193.232614 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.39730 -39.31808 -38.39695 -37.21074 -35.49981 -34.25654 -33.21994 -32.25128 -30.23602 -30.13910 -29.08324 -27.91275 -26.71446 -25.69636 -24.32714 -23.48325 -22.22606 -21.50666 -20.10986 -19.72813 -19.37144 -17.29865 -17.17870 -17.08101 -16.30378 -16.14672 -15.54184 -15.27307 -15.18874 -15.04280 -14.58578 -14.43749 -14.16503 -14.07489 -13.85695 -13.60784 -13.12285 -13.00349 -12.94757 -12.76657 -12.48528 -12.34916 -12.31682 -12.22018 -11.77826 -11.63535 -11.56719 -11.54405 -11.47037 -11.10991 -11.08380 -11.04833 -10.88611 -10.77163 -10.59415 -10.47658 -10.17460 -9.34864 -9.23975 -9.11658 -8.69965 -8.68800 -8.34426 -8.01910 -6.31042 -4.39402 1.77745 2.54409 3.19015 3.27969 3.31700 3.49621 3.58648 3.99166 4.25861 4.32414 4.47134 4.63681 4.67994 4.74486 4.81016 4.93957 4.97485 5.03158 5.11784 5.13883 5.23791 5.28750 5.40163 5.45282 5.50065 5.62372 5.64086 5.65610 5.70590 5.77646 5.81115 5.87322 5.88771 6.04630 6.07969 6.14903 6.35680 6.51829 6.64173 6.66209 6.75215 6.80901 6.83933 7.16620 7.21118 7.33401 7.70612 7.86449 8.01601 8.02936 8.42575 8.65002 9.27423 9.36273 10.76853 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.001913 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.267430 B =14632.394488 C =15006.354463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.079 3.921 4 H 0.083 0.917 5 C -0.189 4.189 6 N -0.527 5.527 7 C 0.011 3.989 8 C 0.042 3.958 9 C 0.122 3.878 10 N -0.708 5.708 11 C 0.512 3.488 12 O -0.515 6.515 13 C 0.506 3.494 14 O -0.539 6.539 15 N -0.575 5.575 16 C 0.098 3.902 17 C -0.120 4.120 18 C 0.247 3.753 19 O -0.583 6.583 20 C -0.536 4.536 21 H 0.068 0.932 22 C 0.069 3.931 23 N -0.895 5.895 24 Si 0.904 3.096 25 H -0.271 1.271 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.101 3.899 29 H 0.067 0.933 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.061 0.939 36 H 0.056 0.944 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.032 0.968 40 H 0.083 0.917 41 H 0.044 0.956 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.411 0.589 45 H 0.069 0.931 46 H 0.087 0.913 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.382 0.618 50 H 0.270 0.730 51 H 0.072 0.928 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.570 -23.339 -8.190 24.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C -0.029 4.029 4 H 0.102 0.898 5 C -0.248 4.248 6 N -0.251 5.251 7 C -0.137 4.137 8 C -0.086 4.086 9 C -0.001 4.001 10 N -0.363 5.363 11 C 0.294 3.706 12 O -0.390 6.390 13 C 0.288 3.712 14 O -0.418 6.418 15 N -0.307 5.307 16 C -0.024 4.024 17 C -0.158 4.158 18 C 0.206 3.794 19 O -0.391 6.391 20 C -0.574 4.574 21 H 0.086 0.914 22 C -0.134 4.134 23 N -0.534 5.534 24 Si 0.732 3.268 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.020 4.020 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.091 0.909 38 H 0.091 0.909 39 H 0.050 0.950 40 H 0.101 0.899 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.089 0.911 44 H 0.247 0.753 45 H 0.087 0.913 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.097 0.903 49 H 0.232 0.768 50 H 0.080 0.920 51 H 0.091 0.909 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.779 -23.892 -7.722 25.172 hybrid contribution 1.917 1.534 -0.633 2.535 sum 3.696 -22.358 -8.355 24.153 Atomic orbital electron populations 1.21674 0.95028 1.00920 1.02683 1.21592 0.96976 0.94907 1.01789 1.21805 0.93325 0.95765 0.92022 0.89838 1.22498 0.97527 1.02231 1.02534 1.62066 1.57878 1.01935 1.03240 1.22576 0.96663 1.00551 0.93868 1.22266 0.99091 0.88460 0.98823 1.21341 1.01848 0.78690 0.98263 1.45645 1.56099 1.07574 1.26963 1.20379 0.79830 0.88012 0.82409 1.90704 1.38284 1.76953 1.33088 1.19555 0.81981 0.86485 0.83167 1.90721 1.40779 1.76457 1.33884 1.48714 1.49581 1.10102 1.22325 1.22695 0.95488 0.98859 0.85342 1.22855 1.01925 0.94162 0.96893 1.19535 0.81201 0.90383 0.88242 1.86131 1.29354 1.53619 1.70044 1.21545 1.33160 1.00075 1.02601 0.91351 1.25086 0.95112 0.98511 0.94662 1.69699 1.45274 1.26555 1.11839 0.86335 0.79725 0.81177 0.79596 1.19560 1.20803 1.20722 1.23231 1.02231 0.74627 1.01927 0.91351 0.93137 0.93476 0.91843 0.91817 0.92073 0.91952 0.92450 0.90927 0.90920 0.94985 0.89888 0.93732 0.90157 0.91097 0.75335 0.91312 0.89487 0.90433 0.90324 0.76800 0.92026 0.90930 0.91047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.80 37.16 0.36 -0.56 16 2 C -0.11 -0.66 5.33 -26.73 -0.14 -0.80 16 3 C 0.08 0.50 2.31 -67.71 -0.16 0.34 16 4 H 0.08 0.54 7.93 -51.93 -0.41 0.13 16 5 C -0.19 -1.10 8.44 37.16 0.31 -0.79 16 6 N -0.53 -3.87 4.17 -234.89 -0.98 -4.85 16 7 C 0.01 0.08 8.44 60.06 0.51 0.58 16 8 C 0.04 0.33 4.64 -3.82 -0.02 0.31 16 9 C 0.12 1.25 5.60 -4.04 -0.02 1.22 16 10 N -0.71 -8.95 5.55 -60.73 -0.34 -9.29 16 11 C 0.51 8.52 7.86 -11.58 -0.09 8.43 16 12 O -0.52 -9.24 13.77 5.50 0.08 -9.16 16 13 C 0.51 10.07 7.91 -11.58 -0.09 9.98 16 14 O -0.54 -11.65 16.80 5.50 0.09 -11.56 16 15 N -0.58 -12.19 3.32 -170.88 -0.57 -12.76 16 16 C 0.10 1.91 6.07 -2.41 -0.01 1.90 16 17 C -0.12 -2.47 6.24 -24.46 -0.15 -2.63 16 18 C 0.25 5.97 0.85 -89.94 -0.08 5.89 16 19 O -0.58 -14.62 13.07 -35.23 -0.46 -15.08 16 20 C -0.54 -13.90 8.13 -34.44 -0.28 -14.18 16 21 H 0.07 1.75 7.78 -52.48 -0.41 1.34 16 22 C 0.07 1.79 5.27 -17.82 -0.09 1.70 16 23 N -0.89 -23.52 10.96 55.43 0.61 -22.91 16 24 Si 0.90 20.30 29.54 -169.99 -5.02 15.28 16 25 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 C 0.10 2.42 5.23 -3.06 -0.02 2.40 16 29 H 0.07 0.52 7.75 -51.93 -0.40 0.12 16 30 H 0.05 0.32 8.14 -51.92 -0.42 -0.10 16 31 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.06 0.37 6.26 -51.93 -0.33 0.04 16 34 H 0.06 0.36 6.42 -51.93 -0.33 0.03 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.06 0.36 6.91 -51.93 -0.36 0.00 16 37 H 0.07 0.53 6.47 -51.92 -0.34 0.20 16 38 H 0.07 0.44 6.21 -51.93 -0.32 0.12 16 39 H 0.03 0.21 6.46 -51.93 -0.34 -0.12 16 40 H 0.08 0.62 7.93 -51.93 -0.41 0.21 16 41 H 0.04 0.34 7.06 -51.93 -0.37 -0.03 16 42 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.75 6.55 -51.93 -0.34 0.41 16 44 H 0.41 4.74 7.94 -40.82 -0.32 4.41 16 45 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 46 H 0.09 1.58 6.14 -51.93 -0.32 1.27 16 47 H 0.08 1.52 8.04 -51.93 -0.42 1.11 16 48 H 0.08 1.53 8.14 -51.93 -0.42 1.11 16 49 H 0.38 9.72 7.45 45.56 0.34 10.06 16 50 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 51 H 0.07 1.87 7.82 -51.93 -0.41 1.46 16 52 H 0.07 1.84 7.92 -51.93 -0.41 1.43 16 LS Contribution 405.00 15.07 6.10 6.10 Total: -1.00 -28.78 405.00 -8.44 -37.22 By element: Atomic # 1 Polarization: 21.20 SS G_CDS: -7.99 Total: 13.21 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: 0.03 Total: 13.80 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -1.28 Total: -49.80 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.29 Total: -35.80 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.02 Total: 15.28 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -28.78 -8.44 -37.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349213726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.500 kcal (2) G-P(sol) polarization free energy of solvation -28.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds