Wall clock time and date at job start Wed Apr 1 2020 00:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46897 * 2 1 4 4 H 1.08997 * 109.46785 * 304.99185 * 3 2 1 5 5 C 1.53002 * 109.47068 * 184.99596 * 3 2 1 6 6 N 1.46900 * 109.47358 * 64.99980 * 3 2 1 7 7 C 1.46891 * 111.00120 * 66.04028 * 6 3 2 8 8 C 1.46898 * 110.99814 * 190.00032 * 6 3 2 9 9 C 1.53006 * 109.47006 * 169.99400 * 8 6 3 10 10 N 1.46496 * 109.46995 * 179.97438 * 9 8 6 11 11 C 1.34775 * 119.99642 * 180.02562 * 10 9 8 12 12 O 1.21345 * 120.00689 * 359.97438 * 11 10 9 13 13 C 1.49455 * 119.99874 * 180.02562 * 11 10 9 14 14 O 1.21349 * 120.00217 * 359.97438 * 13 11 10 15 15 N 1.34775 * 119.99874 * 180.02562 * 13 11 10 16 16 C 1.47423 * 125.65281 * 359.68562 * 15 13 11 17 17 C 1.55130 * 104.72417 * 155.81745 * 16 15 13 18 18 C 1.55155 * 101.48530 * 37.29818 * 17 16 15 19 19 O 1.42899 * 110.71924 * 82.69058 * 18 17 16 20 20 C 1.50698 * 110.87573 * 205.89575 * 18 17 16 21 21 H 1.08006 * 119.99349 * 355.06691 * 20 18 17 22 22 C 1.37874 * 120.00279 * 175.06135 * 20 18 17 23 23 N 1.31511 * 120.00038 * 0.02562 * 22 20 18 24 24 Si 1.86794 * 120.00007 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.47482 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.47467 * 120.00247 * 24 22 20 27 27 H 1.48508 * 109.47334 * 240.00414 * 24 22 20 28 28 C 1.47024 * 125.64599 * 179.97438 * 15 13 11 29 29 H 1.08999 * 109.47795 * 300.00279 * 1 2 3 30 30 H 1.09007 * 109.46980 * 60.00878 * 1 2 3 31 31 H 1.08999 * 109.46759 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47795 * 239.99721 * 2 1 3 33 33 H 1.09004 * 109.47268 * 119.99555 * 2 1 3 34 34 H 1.09005 * 109.46995 * 300.00321 * 5 3 2 35 35 H 1.09005 * 109.47325 * 59.99697 * 5 3 2 36 36 H 1.08997 * 109.47238 * 179.97438 * 5 3 2 37 37 H 1.09008 * 109.47294 * 183.95307 * 7 6 3 38 38 H 1.08994 * 109.47718 * 303.95889 * 7 6 3 39 39 H 1.09007 * 109.47181 * 63.96365 * 7 6 3 40 40 H 1.09001 * 109.47062 * 49.99654 * 8 6 3 41 41 H 1.08993 * 109.47084 * 289.99101 * 8 6 3 42 42 H 1.09001 * 109.46801 * 300.00064 * 9 8 6 43 43 H 1.09001 * 109.46998 * 59.99660 * 9 8 6 44 44 H 0.96998 * 120.00192 * 359.97438 * 10 9 8 45 45 H 1.08997 * 110.36593 * 274.75439 * 16 15 13 46 46 H 1.09006 * 110.36320 * 37.07377 * 16 15 13 47 47 H 1.09000 * 111.19314 * 279.19183 * 17 16 15 48 48 H 1.08996 * 110.90380 * 155.27605 * 17 16 15 49 49 H 0.96704 * 114.00245 * 185.02149 * 19 18 17 50 50 H 0.97005 * 120.00427 * 179.97438 * 23 22 20 51 51 H 1.09003 * 109.88248 * 300.43487 * 28 15 13 52 52 H 1.08997 * 109.88483 * 61.44468 * 28 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6054 1.9815 -0.8419 5 6 3.5648 1.4444 -0.1256 6 7 1.6513 2.0994 1.2552 7 6 2.3339 1.4873 2.4029 8 6 1.9123 3.5438 1.1963 9 6 1.2731 4.2273 2.4067 10 7 1.5340 5.6677 2.3483 11 6 1.0637 6.4775 3.3175 12 8 0.4239 6.0137 4.2384 13 6 1.3293 7.9471 3.2577 14 8 1.9688 8.4111 2.3366 15 7 0.8595 8.7568 4.2272 16 6 0.0675 8.3294 5.3949 17 6 0.3137 9.4283 6.4619 18 6 0.3605 10.7065 5.5837 19 8 -0.9596 11.1782 5.3066 20 6 1.1812 11.7831 6.2459 21 1 1.5727 11.6287 7.2406 22 6 1.4323 12.9651 5.5819 23 7 0.9553 13.1532 4.3709 24 14 2.4502 14.2992 6.4025 25 1 2.8665 13.8440 7.7533 26 1 3.6557 14.5777 5.5813 27 1 1.6381 15.5365 6.5251 28 6 1.0469 10.2136 4.2924 29 1 -0.3635 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.9994 0.9054 0.7162 35 1 3.8533 0.9570 -1.0570 36 1 3.9281 2.4721 -0.1261 37 1 1.9758 1.9451 3.3251 38 1 2.1239 0.4180 2.4227 39 1 3.4087 1.6449 2.3127 40 1 1.4856 3.9530 0.2806 41 1 2.9880 3.7192 1.2060 42 1 0.1974 4.0518 2.3970 43 1 1.6998 3.8180 3.3224 44 1 2.0458 6.0385 1.6124 45 1 -0.9903 8.2775 5.1373 46 1 0.4183 7.3633 5.7580 47 1 1.2619 9.2726 6.9763 48 1 -0.5118 9.4724 7.1723 49 1 -0.9893 11.9296 4.6986 50 1 1.1316 13.9849 3.9039 51 1 2.1106 10.4495 4.3246 52 1 0.5889 10.6855 3.4232 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001349213726.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:27 Heat of formation + Delta-G solvation = -133.396391 kcal Electronic energy + Delta-G solvation = -30427.152999 eV Core-core repulsion = 26232.980328 eV Total energy + Delta-G solvation = -4194.172671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.85210 -40.23287 -39.64184 -38.91104 -36.67941 -35.88520 -34.24638 -33.93934 -31.88537 -30.82896 -29.87636 -29.64764 -27.81357 -27.04862 -25.43836 -24.54840 -23.43128 -22.53056 -21.56412 -21.03330 -20.36768 -19.13271 -18.76376 -18.13426 -17.49743 -17.40013 -17.10297 -16.53564 -16.39927 -16.27004 -15.78865 -15.59606 -15.27278 -14.92662 -14.82089 -14.74319 -14.56824 -14.52714 -14.19755 -14.03320 -13.71889 -13.52592 -13.42552 -13.02013 -12.91025 -12.88790 -12.79815 -12.67461 -12.52577 -12.36913 -12.25809 -12.23260 -12.10626 -12.06527 -12.05059 -11.58209 -11.38264 -11.19930 -10.77019 -10.55169 -10.34113 -10.29977 -9.75483 -9.25085 -8.27516 -6.43095 0.31079 1.20802 1.41181 1.44539 1.55084 2.09228 2.35033 2.43301 2.98471 3.01085 3.34790 3.75705 3.78308 3.88939 4.00045 4.03054 4.14655 4.16341 4.31722 4.35087 4.38622 4.49082 4.55349 4.59330 4.60247 4.69180 4.73027 4.80147 4.82288 4.87201 4.95142 4.96951 5.03499 5.06259 5.09747 5.15091 5.18987 5.23709 5.26981 5.30970 5.40443 5.44185 5.56899 5.72220 5.94429 6.05077 6.06889 6.14065 6.35416 6.59565 6.66667 6.89177 7.26449 7.34355 8.79092 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.027118 B = 0.001913 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1032.267430 B =14632.394488 C =15006.354463 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.112 4.112 3 C 0.079 3.921 4 H 0.082 0.918 5 C -0.185 4.185 6 N -0.534 5.534 7 C 0.012 3.988 8 C 0.050 3.950 9 C 0.126 3.874 10 N -0.688 5.688 11 C 0.520 3.480 12 O -0.528 6.528 13 C 0.502 3.498 14 O -0.560 6.560 15 N -0.584 5.584 16 C 0.108 3.892 17 C -0.114 4.114 18 C 0.233 3.767 19 O -0.587 6.587 20 C -0.556 4.556 21 H 0.068 0.932 22 C 0.027 3.973 23 N -0.914 5.914 24 Si 0.964 3.036 25 H -0.266 1.266 26 H -0.282 1.282 27 H -0.278 1.278 28 C 0.119 3.881 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.069 0.931 36 H 0.051 0.949 37 H 0.066 0.934 38 H 0.079 0.921 39 H 0.035 0.965 40 H 0.089 0.911 41 H 0.050 0.950 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.418 0.582 45 H 0.069 0.931 46 H 0.105 0.895 47 H 0.086 0.914 48 H 0.091 0.909 49 H 0.376 0.624 50 H 0.271 0.729 51 H 0.047 0.953 52 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -25.025 -8.138 26.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.029 4.029 4 H 0.100 0.900 5 C -0.244 4.244 6 N -0.258 5.258 7 C -0.136 4.136 8 C -0.079 4.079 9 C 0.003 3.997 10 N -0.341 5.341 11 C 0.300 3.700 12 O -0.405 6.405 13 C 0.285 3.715 14 O -0.441 6.441 15 N -0.317 5.317 16 C -0.013 4.013 17 C -0.152 4.152 18 C 0.192 3.808 19 O -0.395 6.395 20 C -0.594 4.594 21 H 0.086 0.914 22 C -0.174 4.174 23 N -0.554 5.554 24 Si 0.790 3.210 25 H -0.190 1.190 26 H -0.208 1.208 27 H -0.204 1.204 28 C -0.004 4.004 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.088 0.912 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.098 0.902 39 H 0.053 0.947 40 H 0.107 0.893 41 H 0.069 0.931 42 H 0.093 0.907 43 H 0.091 0.909 44 H 0.255 0.745 45 H 0.087 0.913 46 H 0.123 0.877 47 H 0.104 0.896 48 H 0.109 0.891 49 H 0.225 0.775 50 H 0.080 0.920 51 H 0.065 0.935 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.397 -25.626 -7.689 26.862 hybrid contribution 1.730 1.996 -0.726 2.740 sum 4.127 -23.630 -8.415 25.421 Atomic orbital electron populations 1.21640 0.95540 1.01014 1.01877 1.21578 0.96426 0.94607 1.02344 1.21831 0.93722 0.95945 0.91375 0.89962 1.22454 0.96976 1.01990 1.02957 1.62057 1.58288 1.01564 1.03920 1.22579 0.96735 1.00922 0.93363 1.22168 0.99178 0.88795 0.97744 1.21467 1.01768 0.76860 0.99630 1.45598 1.54485 1.08335 1.25711 1.19688 0.80471 0.86498 0.83312 1.90697 1.39329 1.76543 1.33898 1.20240 0.80949 0.88042 0.82234 1.90700 1.41465 1.77355 1.34545 1.48748 1.50363 1.09088 1.23463 1.22696 0.95291 0.99073 0.84252 1.22858 1.02951 0.92436 0.96951 1.19734 0.80610 0.91545 0.88882 1.86122 1.30060 1.53387 1.69882 1.21823 1.33745 1.01006 1.02798 0.91399 1.25802 0.96042 1.00425 0.95166 1.69794 1.45898 1.26964 1.12700 0.85403 0.78175 0.78653 0.78782 1.19000 1.20821 1.20393 1.22749 1.00166 0.76589 1.00866 0.92717 0.93313 0.92972 0.90845 0.91679 0.92065 0.91196 0.92955 0.91546 0.90194 0.94696 0.89309 0.93138 0.90716 0.90928 0.74492 0.91294 0.87696 0.89556 0.89098 0.77450 0.91970 0.93473 0.93772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.80 71.98 0.71 -0.92 16 2 C -0.11 -1.08 5.33 30.59 0.16 -0.92 16 3 C 0.08 0.85 2.31 44.92 0.10 0.96 16 4 H 0.08 0.92 7.93 -2.39 -0.02 0.90 16 5 C -0.19 -1.79 8.44 71.98 0.61 -1.18 16 6 N -0.53 -6.91 4.17 -897.05 -3.74 -10.65 16 7 C 0.01 0.14 8.44 127.69 1.08 1.22 16 8 C 0.05 0.68 4.64 86.31 0.40 1.08 16 9 C 0.13 2.34 5.60 86.38 0.48 2.83 16 10 N -0.69 -16.30 5.55 -464.41 -2.58 -18.88 16 11 C 0.52 16.68 7.86 87.27 0.69 17.36 16 12 O -0.53 -18.09 13.77 -3.23 -0.04 -18.13 16 13 C 0.50 19.86 7.91 87.27 0.69 20.55 16 14 O -0.56 -24.34 16.80 -3.24 -0.05 -24.40 16 15 N -0.58 -24.83 3.32 -812.91 -2.70 -27.53 16 16 C 0.11 4.10 6.07 86.93 0.53 4.63 16 17 C -0.11 -4.59 6.24 32.06 0.20 -4.39 16 18 C 0.23 11.35 0.85 -10.35 -0.01 11.34 16 19 O -0.59 -29.81 13.07 -148.98 -1.95 -31.76 16 20 C -0.56 -28.99 8.13 25.60 0.21 -28.78 16 21 H 0.07 3.46 7.78 -2.91 -0.02 3.44 16 22 C 0.03 1.39 5.27 84.65 0.45 1.83 16 23 N -0.91 -48.91 10.96 21.45 0.24 -48.67 16 24 Si 0.96 41.64 29.54 68.60 2.03 43.66 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 27 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 28 C 0.12 5.84 5.23 86.73 0.45 6.29 16 29 H 0.05 0.77 7.75 -2.39 -0.02 0.75 16 30 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 31 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.06 0.62 6.26 -2.38 -0.01 0.61 16 34 H 0.06 0.60 6.42 -2.38 -0.02 0.58 16 35 H 0.07 0.57 8.14 -2.38 -0.02 0.56 16 36 H 0.05 0.56 6.91 -2.39 -0.02 0.55 16 37 H 0.07 0.87 6.47 -2.38 -0.02 0.86 16 38 H 0.08 0.83 6.21 -2.39 -0.01 0.82 16 39 H 0.03 0.40 6.46 -2.38 -0.02 0.38 16 40 H 0.09 1.14 7.93 -2.39 -0.02 1.12 16 41 H 0.05 0.66 7.06 -2.39 -0.02 0.64 16 42 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.07 1.40 6.55 -2.39 -0.02 1.38 16 44 H 0.42 8.97 7.94 -92.71 -0.74 8.23 16 45 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 46 H 0.11 3.63 6.14 -2.38 -0.01 3.62 16 47 H 0.09 3.30 8.04 -2.39 -0.02 3.28 16 48 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 49 H 0.38 19.69 7.45 -74.05 -0.55 19.14 16 50 H 0.27 13.82 8.31 -92.70 -0.77 13.05 16 51 H 0.05 2.51 7.82 -2.39 -0.02 2.49 16 52 H 0.04 2.37 7.92 -2.39 -0.02 2.35 16 Total: -1.00 -61.15 405.00 -2.40 -63.55 By element: Atomic # 1 Polarization: 41.27 SS G_CDS: -0.35 Total: 40.92 kcal Atomic # 6 Polarization: 25.15 SS G_CDS: 6.75 Total: 31.89 kcal Atomic # 7 Polarization: -96.95 SS G_CDS: -8.78 Total: -105.74 kcal Atomic # 8 Polarization: -72.24 SS G_CDS: -2.05 Total: -74.29 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.66 kcal Total: -61.15 -2.40 -63.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001349213726.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.846 kcal (2) G-P(sol) polarization free energy of solvation -61.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds