Wall clock time and date at job start Wed Apr 1 2020 00:34:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 H 1.09001 * 109.46954 * 306.80816 * 3 2 1 5 5 C 1.52989 * 109.47132 * 186.80329 * 3 2 1 6 6 C 1.52995 * 109.46804 * 66.80395 * 3 2 1 7 7 H 1.09005 * 109.47246 * 172.63085 * 6 3 2 8 8 N 1.46507 * 109.47276 * 52.62961 * 6 3 2 9 9 C 1.34778 * 119.99790 * 100.06305 * 8 6 3 10 10 O 1.21517 * 119.99940 * 4.27718 * 9 8 6 11 11 O 1.34631 * 119.99988 * 184.27514 * 9 8 6 12 12 C 1.45196 * 117.00295 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.47590 * 292.62701 * 6 3 2 14 14 O 1.21288 * 119.99583 * 118.98037 * 13 6 3 15 15 N 1.34766 * 120.00056 * 298.98425 * 13 6 3 16 16 C 1.46504 * 119.99888 * 184.36562 * 15 13 6 17 17 C 1.53074 * 109.44972 * 84.79479 * 16 15 13 18 18 C 1.53192 * 109.29184 * 181.24626 * 17 16 15 19 19 N 1.46928 * 108.89085 * 305.56798 * 18 17 16 20 20 C 1.36932 * 120.63299 * 233.51910 * 19 18 17 21 21 H 1.08005 * 120.00346 * 144.66884 * 20 19 18 22 22 C 1.38812 * 120.00203 * 324.66517 * 20 19 18 23 23 N 1.31619 * 119.99892 * 355.57168 * 22 20 19 24 24 Si 1.86793 * 120.00266 * 175.56509 * 22 20 19 25 25 H 1.48504 * 109.47230 * 90.00458 * 24 22 20 26 26 H 1.48503 * 109.47383 * 210.00341 * 24 22 20 27 27 H 1.48506 * 109.47268 * 330.00145 * 24 22 20 28 28 C 1.46927 * 118.73407 * 53.54689 * 19 18 17 29 29 C 1.53039 * 109.46012 * 204.99940 * 16 15 13 30 30 H 1.09002 * 109.46886 * 163.35279 * 1 2 3 31 31 H 1.08997 * 109.46923 * 283.35066 * 1 2 3 32 32 H 1.09005 * 109.47341 * 43.35521 * 1 2 3 33 33 H 1.09005 * 109.46702 * 239.99999 * 2 1 3 34 34 H 1.08997 * 109.46768 * 120.00392 * 2 1 3 35 35 H 1.08994 * 109.47953 * 306.28660 * 5 3 2 36 36 H 1.09006 * 109.46831 * 66.28651 * 5 3 2 37 37 H 1.08999 * 109.47256 * 186.28138 * 5 3 2 38 38 H 0.96991 * 119.99959 * 280.06958 * 8 6 3 39 39 H 1.09003 * 109.46924 * 300.00284 * 12 11 9 40 40 H 1.09001 * 109.47175 * 59.99675 * 12 11 9 41 41 H 1.09000 * 109.47602 * 180.02562 * 12 11 9 42 42 H 0.97006 * 120.00220 * 4.37416 * 15 13 6 43 43 H 1.08999 * 109.46097 * 324.97532 * 16 15 13 44 44 H 1.08990 * 109.39428 * 61.36243 * 17 16 15 45 45 H 1.09004 * 109.61670 * 301.25261 * 17 16 15 46 46 H 1.09006 * 109.58318 * 185.71898 * 18 17 16 47 47 H 1.08995 * 109.59340 * 65.43053 * 18 17 16 48 48 H 0.97004 * 120.00098 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.59057 * 66.17828 * 28 19 18 50 50 H 1.09001 * 109.58614 * 186.45888 * 28 19 18 51 51 H 1.09010 * 109.49862 * 58.66504 * 29 16 15 52 52 H 1.08997 * 109.49947 * 298.56886 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5807 1.9903 -0.8228 5 6 3.5604 1.4458 -0.1709 6 6 1.6744 2.1126 1.3259 7 1 2.1482 3.0928 1.3805 8 7 2.1417 1.2816 2.4383 9 6 3.2865 1.5933 3.0777 10 8 3.8904 2.6059 2.7835 11 8 3.7610 0.7827 4.0422 12 6 4.9987 1.1812 4.6884 13 6 0.1783 2.2726 1.4122 14 8 -0.4391 1.7291 2.3036 15 7 -0.4733 3.0193 0.4990 16 6 -1.9129 3.2536 0.6370 17 6 -2.1485 4.4441 1.5699 18 6 -3.6550 4.6664 1.7362 19 7 -4.2646 4.8083 0.4069 20 6 -5.0408 5.8960 0.1077 21 1 -5.0202 6.3171 -0.8867 22 6 -5.8542 6.4574 1.0824 23 7 -5.9462 5.8931 2.2679 24 14 -6.8182 8.0138 0.7116 25 1 -8.1494 7.6524 0.1614 26 1 -6.9950 8.7962 1.9613 27 1 -6.0767 8.8303 -0.2828 28 6 -4.0259 3.7605 -0.5951 29 6 -2.5152 3.5503 -0.7383 30 1 -0.3633 -0.9846 -0.2944 31 1 -0.3633 0.2373 0.9999 32 1 -0.3634 0.7472 -0.7055 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0127 0.8063 0.5870 36 1 3.8154 1.0708 -1.1621 37 1 3.9363 2.4629 -0.0595 38 1 1.6272 0.5072 2.7146 39 1 5.7924 1.2466 3.9442 40 1 4.8643 2.1533 5.1627 41 1 5.2688 0.4425 5.4431 42 1 0.0108 3.4016 -0.2496 43 1 -2.3866 2.3664 1.0572 44 1 -1.6943 5.3366 1.1396 45 1 -1.7012 4.2407 2.5429 46 1 -3.8288 5.5727 2.3164 47 1 -4.0958 3.8128 2.2511 48 1 -6.5149 6.2852 2.9489 49 1 -4.4951 2.8315 -0.2713 50 1 -4.4465 4.0679 -1.5526 51 1 -2.3266 2.7103 -1.4070 52 1 -2.0597 4.4516 -1.1482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001359913457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:15 Heat of formation + Delta-G solvation = -103.328250 kcal Electronic energy + Delta-G solvation = -31885.133300 eV Core-core repulsion = 27692.264481 eV Total energy + Delta-G solvation = -4192.868819 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.18552 -40.02194 -37.92760 -36.93967 -36.16563 -34.57919 -33.73200 -32.18684 -30.61337 -30.12257 -29.63118 -28.37261 -27.00140 -24.88451 -23.69486 -22.32646 -22.18525 -21.79018 -20.76129 -19.94102 -19.53990 -18.99682 -17.48259 -17.05846 -16.80539 -16.40736 -16.02273 -15.89232 -15.07721 -14.80616 -14.33699 -14.25895 -13.96839 -13.81967 -13.76680 -13.51713 -13.41378 -13.24884 -13.00177 -12.73528 -12.55730 -12.39863 -12.34127 -12.21722 -11.78000 -11.52361 -11.27215 -11.07090 -11.02155 -10.99317 -10.96502 -10.82289 -10.77433 -10.65451 -10.38351 -10.23446 -10.12008 -9.96483 -9.80889 -9.65171 -9.26199 -8.72701 -8.45335 -6.57675 -5.79656 -3.32702 1.86782 2.52929 2.64983 3.25461 3.36563 3.42858 3.44108 4.00524 4.39163 4.46334 4.47090 4.55187 4.83505 4.87812 4.95655 5.11124 5.15121 5.24491 5.26998 5.29360 5.40649 5.42069 5.45296 5.47012 5.60992 5.62537 5.75826 5.80045 5.87886 5.92521 5.98379 6.03870 6.07055 6.14051 6.22003 6.25315 6.35338 6.40941 6.58744 6.65223 6.76765 6.87458 6.93371 7.15670 7.38852 7.57744 7.72963 7.78382 8.09461 8.24700 8.49905 9.22354 9.81660 10.41931 11.28266 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002557 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.275530 B =10948.188068 C =11748.377889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.118 4.118 3 C -0.100 4.100 4 H 0.089 0.911 5 C -0.142 4.142 6 C 0.142 3.858 7 H 0.125 0.875 8 N -0.684 5.684 9 C 0.652 3.348 10 O -0.572 6.572 11 O -0.371 6.371 12 C 0.057 3.943 13 C 0.517 3.483 14 O -0.534 6.534 15 N -0.718 5.718 16 C 0.152 3.848 17 C -0.148 4.148 18 C 0.176 3.824 19 N -0.592 5.592 20 C -0.257 4.257 21 H 0.063 0.937 22 C 0.008 3.992 23 N -0.903 5.903 24 Si 0.904 3.096 25 H -0.286 1.286 26 H -0.290 1.290 27 H -0.279 1.279 28 C 0.149 3.851 29 C -0.138 4.138 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.052 0.948 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.415 0.585 39 H 0.063 0.937 40 H 0.064 0.936 41 H 0.102 0.898 42 H 0.396 0.604 43 H 0.084 0.916 44 H 0.054 0.946 45 H 0.051 0.949 46 H 0.089 0.911 47 H 0.020 0.980 48 H 0.255 0.745 49 H 0.020 0.980 50 H 0.058 0.942 51 H 0.055 0.945 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.960 -12.176 -3.039 24.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.156 4.156 3 C -0.120 4.120 4 H 0.107 0.893 5 C -0.199 4.199 6 C 0.034 3.966 7 H 0.143 0.857 8 N -0.343 5.343 9 C 0.405 3.595 10 O -0.461 6.461 11 O -0.284 6.284 12 C -0.038 4.038 13 C 0.302 3.698 14 O -0.411 6.411 15 N -0.368 5.368 16 C 0.049 3.951 17 C -0.188 4.188 18 C 0.049 3.951 19 N -0.315 5.315 20 C -0.387 4.387 21 H 0.080 0.920 22 C -0.191 4.191 23 N -0.546 5.546 24 Si 0.734 3.266 25 H -0.213 1.213 26 H -0.216 1.216 27 H -0.204 1.204 28 C 0.021 3.979 29 C -0.178 4.178 30 H 0.072 0.928 31 H 0.098 0.902 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.252 0.748 39 H 0.081 0.919 40 H 0.083 0.917 41 H 0.120 0.880 42 H 0.230 0.770 43 H 0.102 0.898 44 H 0.073 0.927 45 H 0.070 0.930 46 H 0.107 0.893 47 H 0.038 0.962 48 H 0.065 0.935 49 H 0.038 0.962 50 H 0.076 0.924 51 H 0.074 0.926 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 20.753 -12.003 -2.328 24.086 hybrid contribution -0.363 0.738 -0.272 0.866 sum 20.389 -11.265 -2.600 23.439 Atomic orbital electron populations 1.22323 0.95173 1.02099 1.04414 1.21577 0.96443 0.95269 1.02294 1.21671 0.97610 0.97479 0.95280 0.89299 1.21786 0.93994 1.02634 1.01520 1.20998 0.92559 0.97014 0.86029 0.85735 1.44137 1.22743 1.32775 1.34672 1.18007 0.81649 0.81398 0.78472 1.90997 1.60146 1.26670 1.68295 1.86248 1.42214 1.50629 1.49352 1.23204 0.82071 1.01834 0.96646 1.20298 0.88925 0.78457 0.82128 1.90717 1.68348 1.47413 1.34671 1.46308 1.10875 1.52231 1.27358 1.21084 0.77646 0.99318 0.97041 1.22608 1.01907 0.96504 0.97825 1.20756 0.85531 1.01342 0.87425 1.44006 1.56662 1.20911 1.09929 1.19116 1.16988 1.05073 0.97526 0.91966 1.25315 0.97347 0.99445 0.96983 1.69942 1.40545 1.39993 1.04136 0.86274 0.80286 0.82784 0.77254 1.21265 1.21599 1.20427 1.20855 0.90710 0.92254 0.94050 1.22334 1.00120 1.00530 0.94832 0.92786 0.90173 0.92209 0.91622 0.91755 0.92930 0.92249 0.91840 0.74772 0.91859 0.91734 0.87967 0.77038 0.89811 0.92683 0.93022 0.89256 0.96194 0.93482 0.96244 0.92352 0.92623 0.91870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.87 8.49 37.16 0.32 -1.55 16 2 C -0.12 -1.00 5.24 -26.73 -0.14 -1.14 16 3 C -0.10 -0.84 2.34 -90.63 -0.21 -1.06 16 4 H 0.09 0.64 7.21 -51.93 -0.37 0.27 16 5 C -0.14 -1.16 8.63 37.15 0.32 -0.84 16 6 C 0.14 1.53 2.35 -69.08 -0.16 1.37 16 7 H 0.13 1.43 7.08 -51.93 -0.37 1.06 16 8 N -0.68 -7.67 3.64 -59.86 -0.22 -7.89 16 9 C 0.65 8.01 7.74 54.06 0.42 8.43 16 10 O -0.57 -8.21 15.42 -19.29 -0.30 -8.51 16 11 O -0.37 -3.98 10.61 -40.30 -0.43 -4.41 16 12 C 0.06 0.42 10.56 101.05 1.07 1.49 16 13 C 0.52 6.83 4.42 -10.99 -0.05 6.78 16 14 O -0.53 -8.91 13.96 5.55 0.08 -8.84 16 15 N -0.72 -9.02 4.40 -53.75 -0.24 -9.26 16 16 C 0.15 2.47 2.45 -67.87 -0.17 2.30 16 17 C -0.15 -2.87 5.66 -26.59 -0.15 -3.02 16 18 C 0.18 4.22 5.21 -3.71 -0.02 4.20 16 19 N -0.59 -14.53 2.98 -172.32 -0.51 -15.05 16 20 C -0.26 -6.94 9.55 -15.06 -0.14 -7.08 16 21 H 0.06 1.64 7.83 -52.48 -0.41 1.23 16 22 C 0.01 0.23 5.16 -17.43 -0.09 0.14 16 23 N -0.90 -26.15 11.01 55.49 0.61 -25.54 16 24 Si 0.90 21.50 29.55 -169.99 -5.02 16.47 16 25 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.15 2.97 6.52 -3.71 -0.02 2.95 16 29 C -0.14 -2.16 5.55 -26.61 -0.15 -2.31 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.02 4.79 -51.93 -0.25 0.77 16 32 H 0.06 0.61 7.32 -51.93 -0.38 0.23 16 33 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 34 H 0.06 0.56 6.80 -51.93 -0.35 0.20 16 35 H 0.05 0.48 7.34 -51.93 -0.38 0.10 16 36 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.06 0.56 8.12 -51.93 -0.42 0.14 16 38 H 0.41 4.51 7.67 -40.82 -0.31 4.19 16 39 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.40 3.90 7.88 -40.82 -0.32 3.58 16 43 H 0.08 1.54 7.52 -51.93 -0.39 1.15 16 44 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 45 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 46 H 0.09 2.42 6.22 -51.93 -0.32 2.10 16 47 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 49 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.06 1.13 7.93 -51.93 -0.41 0.72 16 51 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 52 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 LS Contribution 402.50 15.07 6.07 6.07 Total: -1.00 -32.24 402.50 -8.05 -40.29 By element: Atomic # 1 Polarization: 14.90 SS G_CDS: -8.91 Total: 6.00 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: 0.82 Total: 10.66 kcal Atomic # 7 Polarization: -57.38 SS G_CDS: -0.36 Total: -57.73 kcal Atomic # 8 Polarization: -21.10 SS G_CDS: -0.65 Total: -21.75 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -32.24 -8.05 -40.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359913457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.040 kcal (2) G-P(sol) polarization free energy of solvation -32.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds