Wall clock time and date at job start Wed Apr 1 2020 00:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47258 * 2 1 4 4 H 1.09001 * 109.46954 * 306.80816 * 3 2 1 5 5 C 1.52989 * 109.47132 * 186.80329 * 3 2 1 6 6 C 1.52995 * 109.46804 * 66.80395 * 3 2 1 7 7 H 1.09005 * 109.47246 * 172.63085 * 6 3 2 8 8 N 1.46507 * 109.47276 * 52.62961 * 6 3 2 9 9 C 1.34778 * 119.99790 * 100.06305 * 8 6 3 10 10 O 1.21517 * 119.99940 * 4.27718 * 9 8 6 11 11 O 1.34631 * 119.99988 * 184.27514 * 9 8 6 12 12 C 1.45196 * 117.00295 * 180.02562 * 11 9 8 13 13 C 1.50705 * 109.47590 * 292.62701 * 6 3 2 14 14 O 1.21288 * 119.99583 * 118.98037 * 13 6 3 15 15 N 1.34766 * 120.00056 * 298.98425 * 13 6 3 16 16 C 1.46504 * 119.99888 * 184.36562 * 15 13 6 17 17 C 1.53074 * 109.44972 * 84.79479 * 16 15 13 18 18 C 1.53192 * 109.29184 * 181.24626 * 17 16 15 19 19 N 1.46928 * 108.89085 * 305.56798 * 18 17 16 20 20 C 1.36932 * 120.63299 * 233.51910 * 19 18 17 21 21 H 1.08005 * 120.00346 * 144.66884 * 20 19 18 22 22 C 1.38812 * 120.00203 * 324.66517 * 20 19 18 23 23 N 1.31619 * 119.99892 * 355.57168 * 22 20 19 24 24 Si 1.86793 * 120.00266 * 175.56509 * 22 20 19 25 25 H 1.48504 * 109.47230 * 90.00458 * 24 22 20 26 26 H 1.48503 * 109.47383 * 210.00341 * 24 22 20 27 27 H 1.48506 * 109.47268 * 330.00145 * 24 22 20 28 28 C 1.46927 * 118.73407 * 53.54689 * 19 18 17 29 29 C 1.53039 * 109.46012 * 204.99940 * 16 15 13 30 30 H 1.09002 * 109.46886 * 163.35279 * 1 2 3 31 31 H 1.08997 * 109.46923 * 283.35066 * 1 2 3 32 32 H 1.09005 * 109.47341 * 43.35521 * 1 2 3 33 33 H 1.09005 * 109.46702 * 239.99999 * 2 1 3 34 34 H 1.08997 * 109.46768 * 120.00392 * 2 1 3 35 35 H 1.08994 * 109.47953 * 306.28660 * 5 3 2 36 36 H 1.09006 * 109.46831 * 66.28651 * 5 3 2 37 37 H 1.08999 * 109.47256 * 186.28138 * 5 3 2 38 38 H 0.96991 * 119.99959 * 280.06958 * 8 6 3 39 39 H 1.09003 * 109.46924 * 300.00284 * 12 11 9 40 40 H 1.09001 * 109.47175 * 59.99675 * 12 11 9 41 41 H 1.09000 * 109.47602 * 180.02562 * 12 11 9 42 42 H 0.97006 * 120.00220 * 4.37416 * 15 13 6 43 43 H 1.08999 * 109.46097 * 324.97532 * 16 15 13 44 44 H 1.08990 * 109.39428 * 61.36243 * 17 16 15 45 45 H 1.09004 * 109.61670 * 301.25261 * 17 16 15 46 46 H 1.09006 * 109.58318 * 185.71898 * 18 17 16 47 47 H 1.08995 * 109.59340 * 65.43053 * 18 17 16 48 48 H 0.97004 * 120.00098 * 180.02562 * 23 22 20 49 49 H 1.08997 * 109.59057 * 66.17828 * 28 19 18 50 50 H 1.09001 * 109.58614 * 186.45888 * 28 19 18 51 51 H 1.09010 * 109.49862 * 58.66504 * 29 16 15 52 52 H 1.08997 * 109.49947 * 298.56886 * 29 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5807 1.9903 -0.8228 5 6 3.5604 1.4458 -0.1709 6 6 1.6744 2.1126 1.3259 7 1 2.1482 3.0928 1.3805 8 7 2.1417 1.2816 2.4383 9 6 3.2865 1.5933 3.0777 10 8 3.8904 2.6059 2.7835 11 8 3.7610 0.7827 4.0422 12 6 4.9987 1.1812 4.6884 13 6 0.1783 2.2726 1.4122 14 8 -0.4391 1.7291 2.3036 15 7 -0.4733 3.0193 0.4990 16 6 -1.9129 3.2536 0.6370 17 6 -2.1485 4.4441 1.5699 18 6 -3.6550 4.6664 1.7362 19 7 -4.2646 4.8083 0.4069 20 6 -5.0408 5.8960 0.1077 21 1 -5.0202 6.3171 -0.8867 22 6 -5.8542 6.4574 1.0824 23 7 -5.9462 5.8931 2.2679 24 14 -6.8182 8.0138 0.7116 25 1 -8.1494 7.6524 0.1614 26 1 -6.9950 8.7962 1.9613 27 1 -6.0767 8.8303 -0.2828 28 6 -4.0259 3.7605 -0.5951 29 6 -2.5152 3.5503 -0.7383 30 1 -0.3633 -0.9846 -0.2944 31 1 -0.3633 0.2373 0.9999 32 1 -0.3634 0.7472 -0.7055 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 4.0127 0.8063 0.5870 36 1 3.8154 1.0708 -1.1621 37 1 3.9363 2.4629 -0.0595 38 1 1.6272 0.5072 2.7146 39 1 5.7924 1.2466 3.9442 40 1 4.8643 2.1533 5.1627 41 1 5.2688 0.4425 5.4431 42 1 0.0108 3.4016 -0.2496 43 1 -2.3866 2.3664 1.0572 44 1 -1.6943 5.3366 1.1396 45 1 -1.7012 4.2407 2.5429 46 1 -3.8288 5.5727 2.3164 47 1 -4.0958 3.8128 2.2511 48 1 -6.5149 6.2852 2.9489 49 1 -4.4951 2.8315 -0.2713 50 1 -4.4465 4.0679 -1.5526 51 1 -2.3266 2.7103 -1.4070 52 1 -2.0597 4.4516 -1.1482 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001359913457.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:34:14 Heat of formation + Delta-G solvation = -125.129709 kcal Electronic energy + Delta-G solvation = -31886.078682 eV Core-core repulsion = 27692.264481 eV Total energy + Delta-G solvation = -4193.814201 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.14733 -41.04397 -39.26732 -38.07383 -37.06336 -36.06583 -34.66603 -33.88908 -31.81588 -31.48302 -31.11754 -29.23271 -27.90366 -26.63156 -24.46543 -23.91338 -23.70430 -22.73012 -21.84776 -21.11889 -20.71987 -20.06941 -18.88182 -18.21248 -17.94387 -17.47231 -17.22504 -16.80637 -16.71007 -15.95805 -15.73874 -15.32079 -15.17057 -15.14256 -14.83010 -14.73947 -14.53022 -14.37113 -14.15457 -14.03435 -13.85276 -13.58405 -13.19798 -13.01594 -12.92503 -12.88947 -12.73724 -12.57513 -12.48488 -12.14814 -12.04592 -11.94981 -11.87137 -11.84418 -11.79581 -11.63706 -11.55858 -11.40136 -11.35983 -10.98300 -10.58434 -10.26294 -9.95131 -8.58148 -7.86792 -5.43156 1.02969 1.47719 1.47971 1.50897 1.57546 1.65921 2.17935 2.50483 3.19936 3.30849 3.52678 3.66534 3.70718 3.79233 3.90936 4.06296 4.13145 4.31238 4.36575 4.36765 4.37174 4.42563 4.50546 4.58554 4.68733 4.69447 4.73041 4.78232 4.82976 4.89157 4.92999 5.02797 5.07681 5.10107 5.14056 5.17825 5.19003 5.29060 5.31094 5.35925 5.39823 5.48792 5.49828 5.56959 5.65417 5.73699 6.24266 6.44068 6.52835 7.16684 7.17674 7.21598 7.84443 8.39762 9.19207 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018198 B = 0.002557 C = 0.002383 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.275530 B =10948.188068 C =11748.377889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.113 4.113 3 C -0.093 4.093 4 H 0.110 0.890 5 C -0.136 4.136 6 C 0.149 3.851 7 H 0.122 0.878 8 N -0.681 5.681 9 C 0.651 3.349 10 O -0.596 6.596 11 O -0.376 6.376 12 C 0.049 3.951 13 C 0.520 3.480 14 O -0.570 6.570 15 N -0.703 5.703 16 C 0.167 3.833 17 C -0.133 4.133 18 C 0.186 3.814 19 N -0.610 5.610 20 C -0.263 4.263 21 H 0.071 0.929 22 C -0.050 4.050 23 N -0.939 5.939 24 Si 0.970 3.030 25 H -0.284 1.284 26 H -0.297 1.297 27 H -0.265 1.265 28 C 0.141 3.859 29 C -0.121 4.121 30 H 0.056 0.944 31 H 0.053 0.947 32 H 0.062 0.938 33 H 0.084 0.916 34 H 0.060 0.940 35 H 0.040 0.960 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.134 0.866 42 H 0.415 0.585 43 H 0.062 0.938 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.052 0.948 47 H -0.012 1.012 48 H 0.249 0.751 49 H 0.011 0.989 50 H 0.066 0.934 51 H 0.094 0.906 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.916 -12.621 -5.483 26.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.151 4.151 3 C -0.113 4.113 4 H 0.128 0.872 5 C -0.193 4.193 6 C 0.041 3.959 7 H 0.140 0.860 8 N -0.341 5.341 9 C 0.404 3.596 10 O -0.487 6.487 11 O -0.290 6.290 12 C -0.044 4.044 13 C 0.306 3.694 14 O -0.449 6.449 15 N -0.355 5.355 16 C 0.062 3.938 17 C -0.173 4.173 18 C 0.059 3.941 19 N -0.334 5.334 20 C -0.393 4.393 21 H 0.088 0.912 22 C -0.246 4.246 23 N -0.584 5.584 24 Si 0.798 3.202 25 H -0.210 1.210 26 H -0.223 1.223 27 H -0.190 1.190 28 C 0.016 3.984 29 C -0.160 4.160 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.152 0.848 42 H 0.252 0.748 43 H 0.081 0.919 44 H 0.078 0.922 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.006 0.994 48 H 0.058 0.942 49 H 0.029 0.971 50 H 0.085 0.915 51 H 0.113 0.887 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 22.751 -12.465 -4.821 26.387 hybrid contribution -0.950 0.803 0.535 1.354 sum 21.802 -11.662 -4.286 25.093 Atomic orbital electron populations 1.22262 0.96397 1.02333 1.02727 1.21545 0.95127 0.95393 1.03013 1.21697 0.98081 0.97433 0.94101 0.87229 1.21731 0.93341 1.02039 1.02235 1.21017 0.90220 0.97350 0.87348 0.86008 1.44177 1.22501 1.32661 1.34722 1.18124 0.81689 0.81222 0.78586 1.90974 1.60903 1.27680 1.69124 1.86261 1.43452 1.50396 1.48869 1.23518 0.80927 1.02741 0.97249 1.20716 0.89875 0.77523 0.81265 1.90716 1.69331 1.48767 1.36130 1.45961 1.09310 1.52151 1.28039 1.20638 0.79776 0.96713 0.96655 1.22352 0.98146 0.98345 0.98496 1.20427 0.88451 0.98122 0.87091 1.44249 1.56817 1.21730 1.10577 1.19508 1.16458 1.05698 0.97640 0.91177 1.26109 0.98780 1.02738 0.96928 1.70137 1.41588 1.41647 1.05062 0.85234 0.78869 0.79245 0.76845 1.21021 1.22313 1.18995 1.21056 0.93954 0.90483 0.92954 1.22132 0.96436 1.02666 0.94802 0.92450 0.92842 0.91938 0.89787 0.92172 0.94117 0.90297 0.92561 0.74608 0.91431 0.92308 0.84759 0.74806 0.91947 0.92174 0.93931 0.92992 0.99399 0.94172 0.97086 0.91534 0.88723 0.90717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.31 8.49 71.98 0.61 -2.70 16 2 C -0.11 -1.62 5.24 30.60 0.16 -1.46 16 3 C -0.09 -1.31 2.34 -10.80 -0.03 -1.33 16 4 H 0.11 1.12 7.21 -2.39 -0.02 1.10 16 5 C -0.14 -1.86 8.63 71.98 0.62 -1.24 16 6 C 0.15 2.98 2.35 44.24 0.10 3.08 16 7 H 0.12 2.60 7.08 -2.38 -0.02 2.58 16 8 N -0.68 -14.80 3.64 -573.70 -2.09 -16.89 16 9 C 0.65 15.58 7.74 129.79 1.00 16.58 16 10 O -0.60 -16.73 15.42 19.79 0.31 -16.43 16 11 O -0.38 -7.77 10.61 -55.40 -0.59 -8.35 16 12 C 0.05 0.68 10.56 113.37 1.20 1.87 16 13 C 0.52 13.15 4.42 87.66 0.39 13.53 16 14 O -0.57 -19.09 13.96 -3.06 -0.04 -19.14 16 15 N -0.70 -16.18 4.40 -442.35 -1.95 -18.12 16 16 C 0.17 5.22 2.45 45.03 0.11 5.33 16 17 C -0.13 -5.21 5.66 30.68 0.17 -5.03 16 18 C 0.19 9.29 5.21 86.36 0.45 9.74 16 19 N -0.61 -30.25 2.98 -699.09 -2.08 -32.33 16 20 C -0.26 -14.22 9.55 84.03 0.80 -13.42 16 21 H 0.07 3.62 7.83 -2.91 -0.02 3.60 16 22 C -0.05 -2.81 5.16 84.86 0.44 -2.37 16 23 N -0.94 -56.53 11.01 21.65 0.24 -56.29 16 24 Si 0.97 44.73 29.55 68.60 2.03 46.76 16 25 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.16 16 27 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 28 C 0.14 5.50 6.52 86.36 0.56 6.06 16 29 C -0.12 -3.44 5.55 30.67 0.17 -3.27 16 30 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.05 1.31 4.79 -2.39 -0.01 1.29 16 32 H 0.06 1.09 7.32 -2.38 -0.02 1.07 16 33 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 34 H 0.06 0.93 6.80 -2.39 -0.02 0.91 16 35 H 0.04 0.66 7.34 -2.39 -0.02 0.64 16 36 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.06 0.87 8.12 -2.39 -0.02 0.85 16 38 H 0.42 8.91 7.67 -92.71 -0.71 8.19 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.41 6.66 7.88 -92.70 -0.73 5.93 16 43 H 0.06 2.29 7.52 -2.39 -0.02 2.27 16 44 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 46 H 0.05 2.96 6.22 -2.38 -0.01 2.95 16 47 H -0.01 -0.67 8.14 -2.39 -0.02 -0.69 16 48 H 0.25 14.59 8.31 -92.71 -0.77 13.81 16 49 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.07 2.46 7.93 -2.39 -0.02 2.44 16 51 H 0.09 2.05 8.14 -2.38 -0.02 2.03 16 52 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -72.93 402.50 2.08 -70.86 By element: Atomic # 1 Polarization: 25.07 SS G_CDS: -0.52 Total: 24.55 kcal Atomic # 6 Polarization: 18.61 SS G_CDS: 6.77 Total: 25.38 kcal Atomic # 7 Polarization: -117.75 SS G_CDS: -5.88 Total: -123.63 kcal Atomic # 8 Polarization: -43.59 SS G_CDS: -0.33 Total: -43.92 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -72.93 2.08 -70.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001359913457.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.275 kcal (2) G-P(sol) polarization free energy of solvation -72.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds