Wall clock time and date at job start Wed Apr 1 2020 00:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46669 * 2 1 4 4 H 1.08995 * 109.47318 * 305.27012 * 3 2 1 5 5 O 1.42900 * 109.47099 * 65.27560 * 3 2 1 6 6 C 1.42898 * 114.00000 * 209.39375 * 5 3 2 7 7 C 1.50707 * 109.46746 * 185.27219 * 3 2 1 8 8 O 1.21277 * 119.99777 * 245.00046 * 7 3 2 9 9 N 1.34775 * 120.00084 * 65.00015 * 7 3 2 10 10 C 1.46498 * 120.00271 * 179.97438 * 9 7 3 11 11 C 1.53509 * 114.17374 * 155.00046 * 10 9 7 12 12 N 1.47482 * 87.93018 * 87.81505 * 11 10 9 13 13 C 1.46897 * 110.99839 * 138.70444 * 12 11 10 14 14 C 1.50699 * 109.47157 * 169.99699 * 13 12 11 15 15 O 1.21290 * 119.99846 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00211 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99940 * 0.02562 * 16 14 13 18 18 C 1.53006 * 109.47244 * 90.00127 * 17 16 14 19 19 C 1.46503 * 119.99893 * 180.02562 * 16 14 13 20 20 C 1.50703 * 109.47090 * 90.00254 * 19 16 14 21 21 H 1.07994 * 119.99766 * 359.97438 * 20 19 16 22 22 C 1.37877 * 119.99688 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99923 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00323 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46915 * 90.00212 * 24 22 20 26 26 H 1.48498 * 109.47297 * 209.99748 * 24 22 20 27 27 H 1.48502 * 109.46929 * 330.00170 * 24 22 20 28 28 C 1.47480 * 87.83828 * 27.01095 * 12 11 10 29 29 H 1.08992 * 109.46865 * 174.89117 * 1 2 3 30 30 H 1.09000 * 109.47300 * 294.89602 * 1 2 3 31 31 H 1.09001 * 109.47219 * 54.89124 * 1 2 3 32 32 H 1.08998 * 109.47339 * 240.00207 * 2 1 3 33 33 H 1.08999 * 109.47289 * 119.99596 * 2 1 3 34 34 H 1.08997 * 109.47151 * 184.84108 * 6 5 3 35 35 H 1.09001 * 109.47230 * 304.84840 * 6 5 3 36 36 H 1.09003 * 109.46700 * 64.84442 * 6 5 3 37 37 H 0.96998 * 119.99928 * 0.02562 * 9 7 3 38 38 H 1.09006 * 113.25258 * 22.04716 * 10 9 7 39 39 H 1.08995 * 113.47504 * 333.04802 * 11 10 9 40 40 H 1.09004 * 113.47667 * 202.58003 * 11 10 9 41 41 H 1.08999 * 109.47241 * 50.00150 * 13 12 11 42 42 H 1.08995 * 109.47212 * 289.99579 * 13 12 11 43 43 H 1.09006 * 109.47443 * 209.99772 * 17 16 14 44 44 H 1.08998 * 109.47437 * 330.00320 * 17 16 14 45 45 H 1.08998 * 109.46746 * 59.99770 * 18 17 16 46 46 H 1.08997 * 109.47280 * 180.02562 * 18 17 16 47 47 H 1.09006 * 109.46611 * 300.00154 * 18 17 16 48 48 H 1.09001 * 109.46895 * 210.00030 * 19 16 14 49 49 H 1.08995 * 109.47544 * 330.00127 * 19 16 14 50 50 H 0.96998 * 120.00647 * 179.97438 * 23 22 20 51 51 H 1.08998 * 113.47661 * 87.75567 * 28 12 11 52 52 H 1.08996 * 113.47532 * 218.22581 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6016 1.9829 -0.8390 5 8 1.6674 2.0795 1.2238 6 6 1.4740 3.4907 1.1092 7 6 3.5413 1.4446 -0.1306 8 8 4.2284 1.8600 0.7784 9 7 4.1204 0.9849 -1.2574 10 6 5.5798 0.9874 -1.3846 11 6 6.1269 -0.0565 -2.3682 12 7 5.9585 0.9430 -3.4395 13 6 7.1022 0.9246 -4.3612 14 6 6.7892 1.7723 -5.5672 15 8 5.7189 2.3367 -5.6504 16 7 7.6990 1.9041 -6.5527 17 6 8.9920 1.2229 -6.4519 18 6 8.8870 -0.1668 -7.0835 19 6 7.3949 2.7287 -7.7248 20 6 7.8375 4.1466 -7.4701 21 1 8.2988 4.4074 -6.5291 22 6 7.6536 5.1107 -8.4384 23 7 8.0403 6.3479 -8.2163 24 14 6.8564 4.6593 -10.0663 25 1 5.3855 4.8363 -9.9631 26 1 7.3868 5.5396 -11.1382 27 1 7.1629 3.2432 -10.3918 28 6 6.1237 1.9890 -2.4130 29 1 -0.3633 -1.0235 -0.0915 30 1 -0.3634 0.4326 0.9322 31 1 -0.3634 0.5910 -0.8407 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.2780 3.9118 2.0952 35 1 2.3708 3.9475 0.6906 36 1 0.6256 3.6891 0.4542 37 1 3.5708 0.6531 -1.9845 38 1 6.0954 1.0093 -0.4244 39 1 5.4809 -0.9271 -2.4811 40 1 7.1673 -0.3239 -2.1835 41 1 7.2970 -0.1000 -4.6780 42 1 7.9823 1.3223 -3.8560 43 1 9.7507 1.8039 -6.9763 44 1 9.2702 1.1249 -5.4026 45 1 8.6087 -0.0688 -8.1328 46 1 9.8489 -0.6738 -7.0081 47 1 8.1282 -0.7477 -6.5591 48 1 7.9221 2.3340 -8.5934 49 1 6.3214 2.7114 -7.9126 50 1 7.9112 7.0261 -8.8977 51 1 7.1633 2.2674 -2.2402 52 1 5.4750 2.8517 -2.5639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001373415801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:04 Heat of formation + Delta-G solvation = -71.360915 kcal Electronic energy + Delta-G solvation = -30513.337956 eV Core-core repulsion = 26321.855345 eV Total energy + Delta-G solvation = -4191.482611 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.95803 -39.81691 -38.69723 -37.47339 -35.34310 -34.47878 -33.53062 -32.73894 -30.63630 -30.15375 -28.29025 -27.59502 -26.32639 -26.11616 -24.67911 -23.00565 -22.57020 -21.96875 -20.90538 -19.95350 -18.49710 -17.79228 -17.21742 -16.94786 -16.63927 -16.38752 -15.97042 -15.58659 -15.45934 -15.09829 -14.78718 -14.47400 -14.36878 -14.17558 -13.99096 -13.63719 -13.52727 -13.42081 -12.99333 -12.82380 -12.68619 -12.49128 -12.36922 -12.22670 -11.95907 -11.84286 -11.64877 -11.53792 -11.47646 -11.33937 -11.14513 -10.98794 -10.92570 -10.80058 -10.70861 -10.50739 -10.16420 -9.55920 -9.50842 -9.27278 -9.16496 -8.70392 -8.59949 -7.71493 -6.09856 -4.08478 2.35794 2.75644 3.27786 3.33707 3.35518 3.35969 3.46797 3.57245 4.06617 4.27741 4.35177 4.38486 4.51447 4.61100 4.63574 4.88746 4.92870 5.02858 5.04337 5.13403 5.15348 5.18713 5.19532 5.24621 5.32261 5.37721 5.38433 5.39908 5.48452 5.51601 5.53337 5.58063 5.67582 5.69383 5.83492 5.90742 5.92681 6.11341 6.17191 6.32265 6.35255 6.65312 6.70180 6.82290 6.96631 7.32201 7.36178 7.60605 8.01739 8.26680 8.46341 8.92378 9.03016 9.50703 11.03606 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002364 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.987903 B =11839.424153 C =12816.763872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.089 0.911 5 O -0.357 6.357 6 C 0.028 3.972 7 C 0.492 3.508 8 O -0.527 6.527 9 N -0.700 5.700 10 C 0.117 3.883 11 C -0.012 4.012 12 N -0.446 5.446 13 C 0.000 4.000 14 C 0.511 3.489 15 O -0.521 6.521 16 N -0.597 5.597 17 C 0.107 3.893 18 C -0.169 4.169 19 C 0.218 3.782 20 C -0.527 4.527 21 H 0.073 0.927 22 C 0.072 3.928 23 N -0.898 5.898 24 Si 0.877 3.123 25 H -0.274 1.274 26 H -0.285 1.285 27 H -0.266 1.266 28 C -0.011 4.011 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.055 0.945 32 H 0.082 0.918 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.046 0.954 36 H 0.043 0.957 37 H 0.408 0.592 38 H 0.111 0.889 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.097 0.903 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.059 0.941 46 H 0.061 0.939 47 H 0.050 0.950 48 H 0.028 0.972 49 H 0.035 0.965 50 H 0.264 0.736 51 H 0.080 0.920 52 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.876 -16.937 14.778 23.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.153 4.153 3 C 0.012 3.988 4 H 0.107 0.893 5 O -0.274 6.274 6 C -0.068 4.068 7 C 0.278 3.722 8 O -0.402 6.402 9 N -0.353 5.353 10 C 0.011 3.989 11 C -0.141 4.141 12 N -0.168 5.168 13 C -0.132 4.132 14 C 0.296 3.704 15 O -0.396 6.396 16 N -0.330 5.330 17 C -0.018 4.018 18 C -0.228 4.228 19 C 0.097 3.903 20 C -0.566 4.566 21 H 0.091 0.909 22 C -0.131 4.131 23 N -0.537 5.537 24 Si 0.704 3.296 25 H -0.199 1.199 26 H -0.211 1.211 27 H -0.191 1.191 28 C -0.141 4.141 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.108 0.892 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.244 0.756 38 H 0.129 0.871 39 H 0.110 0.890 40 H 0.100 0.900 41 H 0.115 0.885 42 H 0.089 0.911 43 H 0.103 0.897 44 H 0.083 0.917 45 H 0.078 0.922 46 H 0.080 0.920 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.053 0.947 50 H 0.074 0.926 51 H 0.098 0.902 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.564 -16.231 15.016 23.712 hybrid contribution 0.516 0.097 -1.258 1.363 sum -8.049 -16.134 13.758 22.680 Atomic orbital electron populations 1.21727 0.94300 1.02061 1.02601 1.21586 0.97451 0.92706 1.03581 1.22139 0.90455 0.96650 0.89547 0.89283 1.87972 1.88253 1.20905 1.30249 1.22873 0.99915 0.81062 1.02954 1.21469 0.91417 0.77294 0.82025 1.90709 1.64745 1.45458 1.39303 1.45569 1.06542 1.64716 1.18444 1.21936 0.81635 0.96554 0.98800 1.24288 1.01347 0.97292 0.91216 1.68837 1.36515 1.03701 1.07761 1.22708 0.93737 1.01350 0.95418 1.20044 0.84674 0.81975 0.83663 1.90669 1.23905 1.46833 1.78189 1.47951 1.14867 1.48486 1.21677 1.21421 0.86924 0.92791 1.00621 1.22238 1.01360 0.97211 1.01986 1.19613 0.97097 0.90704 0.82843 1.21324 1.40416 0.91453 1.03392 0.90905 1.24862 0.94988 0.94749 0.98457 1.69895 1.47397 1.01591 1.34786 0.86844 0.80378 0.78729 0.83693 1.19919 1.21091 1.19085 1.24427 1.01491 0.97550 0.90612 0.92168 0.91805 0.92543 0.89999 0.90371 0.89229 0.93510 0.93808 0.75640 0.87091 0.89044 0.89972 0.88506 0.91074 0.89744 0.91709 0.92169 0.92014 0.93057 0.95361 0.94674 0.92574 0.90214 0.88893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.76 37.16 0.36 -0.57 16 2 C -0.12 -0.82 5.61 -26.73 -0.15 -0.97 16 3 C 0.07 0.69 2.51 -27.88 -0.07 0.62 16 4 H 0.09 0.70 7.83 -51.93 -0.41 0.29 16 5 O -0.36 -3.95 9.53 -55.09 -0.52 -4.48 16 6 C 0.03 0.26 10.79 101.05 1.09 1.35 16 7 C 0.49 5.80 7.10 -10.98 -0.08 5.72 16 8 O -0.53 -8.29 16.10 -14.30 -0.23 -8.52 16 9 N -0.70 -7.11 5.29 -53.54 -0.28 -7.39 16 10 C 0.12 1.24 4.59 -67.72 -0.31 0.93 16 11 C -0.01 -0.11 7.45 -7.54 -0.06 -0.16 16 12 N -0.45 -5.90 5.82 -246.10 -1.43 -7.34 16 13 C 0.00 -0.01 3.85 -4.98 -0.02 -0.02 16 14 C 0.51 10.19 7.74 -10.99 -0.09 10.10 16 15 O -0.52 -12.82 16.01 5.55 0.09 -12.73 16 16 N -0.60 -11.98 2.46 -175.06 -0.43 -12.41 16 17 C 0.11 1.59 5.93 -4.04 -0.02 1.57 16 18 C -0.17 -2.03 10.24 37.16 0.38 -1.65 16 19 C 0.22 5.30 4.23 -5.19 -0.02 5.28 16 20 C -0.53 -15.12 9.94 -34.44 -0.34 -15.46 16 21 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.75 13.96 55.43 0.77 -26.98 16 24 Si 0.88 21.60 27.47 -169.99 -4.67 16.93 16 25 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 27 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 28 C -0.01 -0.14 7.53 -7.54 -0.06 -0.20 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.44 7.97 -51.93 -0.41 0.03 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.08 0.45 7.76 -51.93 -0.40 0.05 16 33 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.48 8.11 -51.93 -0.42 0.06 16 36 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 37 H 0.41 3.53 8.46 -40.82 -0.35 3.19 16 38 H 0.11 1.21 7.45 -51.93 -0.39 0.82 16 39 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.60 7.91 -51.93 -0.41 0.19 16 41 H 0.10 1.10 7.13 -51.93 -0.37 0.73 16 42 H 0.07 0.88 6.56 -51.93 -0.34 0.54 16 43 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 44 H 0.06 0.80 6.44 -51.93 -0.33 0.46 16 45 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 47 H 0.05 0.57 7.22 -51.93 -0.38 0.20 16 48 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 49 H 0.04 0.92 6.85 -51.93 -0.36 0.57 16 50 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 51 H 0.08 0.96 7.42 -51.93 -0.39 0.58 16 52 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 422.07 15.07 6.36 6.36 Total: -1.00 -37.63 422.07 -8.96 -46.59 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -9.13 Total: 1.42 kcal Atomic # 6 Polarization: 8.02 SS G_CDS: 0.52 Total: 8.54 kcal Atomic # 7 Polarization: -52.74 SS G_CDS: -1.37 Total: -54.11 kcal Atomic # 8 Polarization: -25.06 SS G_CDS: -0.67 Total: -25.73 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -4.67 Total: 16.93 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -37.63 -8.96 -46.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373415801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.773 kcal (2) G-P(sol) polarization free energy of solvation -37.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds