Wall clock time and date at job start Wed Apr 1 2020 00:57:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53008 * 109.46669 * 2 1 4 4 H 1.08995 * 109.47318 * 305.27012 * 3 2 1 5 5 O 1.42900 * 109.47099 * 65.27560 * 3 2 1 6 6 C 1.42898 * 114.00000 * 209.39375 * 5 3 2 7 7 C 1.50707 * 109.46746 * 185.27219 * 3 2 1 8 8 O 1.21277 * 119.99777 * 245.00046 * 7 3 2 9 9 N 1.34775 * 120.00084 * 65.00015 * 7 3 2 10 10 C 1.46498 * 120.00271 * 179.97438 * 9 7 3 11 11 C 1.53509 * 114.17374 * 155.00046 * 10 9 7 12 12 N 1.47482 * 87.93018 * 87.81505 * 11 10 9 13 13 C 1.46897 * 110.99839 * 138.70444 * 12 11 10 14 14 C 1.50699 * 109.47157 * 169.99699 * 13 12 11 15 15 O 1.21290 * 119.99846 * 0.02562 * 14 13 12 16 16 N 1.34774 * 120.00211 * 179.97438 * 14 13 12 17 17 C 1.46494 * 119.99940 * 0.02562 * 16 14 13 18 18 C 1.53006 * 109.47244 * 90.00127 * 17 16 14 19 19 C 1.46503 * 119.99893 * 180.02562 * 16 14 13 20 20 C 1.50703 * 109.47090 * 90.00254 * 19 16 14 21 21 H 1.07994 * 119.99766 * 359.97438 * 20 19 16 22 22 C 1.37877 * 119.99688 * 179.97438 * 20 19 16 23 23 N 1.31513 * 119.99923 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00323 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46915 * 90.00212 * 24 22 20 26 26 H 1.48498 * 109.47297 * 209.99748 * 24 22 20 27 27 H 1.48502 * 109.46929 * 330.00170 * 24 22 20 28 28 C 1.47480 * 87.83828 * 27.01095 * 12 11 10 29 29 H 1.08992 * 109.46865 * 174.89117 * 1 2 3 30 30 H 1.09000 * 109.47300 * 294.89602 * 1 2 3 31 31 H 1.09001 * 109.47219 * 54.89124 * 1 2 3 32 32 H 1.08998 * 109.47339 * 240.00207 * 2 1 3 33 33 H 1.08999 * 109.47289 * 119.99596 * 2 1 3 34 34 H 1.08997 * 109.47151 * 184.84108 * 6 5 3 35 35 H 1.09001 * 109.47230 * 304.84840 * 6 5 3 36 36 H 1.09003 * 109.46700 * 64.84442 * 6 5 3 37 37 H 0.96998 * 119.99928 * 0.02562 * 9 7 3 38 38 H 1.09006 * 113.25258 * 22.04716 * 10 9 7 39 39 H 1.08995 * 113.47504 * 333.04802 * 11 10 9 40 40 H 1.09004 * 113.47667 * 202.58003 * 11 10 9 41 41 H 1.08999 * 109.47241 * 50.00150 * 13 12 11 42 42 H 1.08995 * 109.47212 * 289.99579 * 13 12 11 43 43 H 1.09006 * 109.47443 * 209.99772 * 17 16 14 44 44 H 1.08998 * 109.47437 * 330.00320 * 17 16 14 45 45 H 1.08998 * 109.46746 * 59.99770 * 18 17 16 46 46 H 1.08997 * 109.47280 * 180.02562 * 18 17 16 47 47 H 1.09006 * 109.46611 * 300.00154 * 18 17 16 48 48 H 1.09001 * 109.46895 * 210.00030 * 19 16 14 49 49 H 1.08995 * 109.47544 * 330.00127 * 19 16 14 50 50 H 0.96998 * 120.00647 * 179.97438 * 23 22 20 51 51 H 1.08998 * 113.47661 * 87.75567 * 28 12 11 52 52 H 1.08996 * 113.47532 * 218.22581 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6016 1.9829 -0.8390 5 8 1.6674 2.0795 1.2238 6 6 1.4740 3.4907 1.1092 7 6 3.5413 1.4446 -0.1306 8 8 4.2284 1.8600 0.7784 9 7 4.1204 0.9849 -1.2574 10 6 5.5798 0.9874 -1.3846 11 6 6.1269 -0.0565 -2.3682 12 7 5.9585 0.9430 -3.4395 13 6 7.1022 0.9246 -4.3612 14 6 6.7892 1.7723 -5.5672 15 8 5.7189 2.3367 -5.6504 16 7 7.6990 1.9041 -6.5527 17 6 8.9920 1.2229 -6.4519 18 6 8.8870 -0.1668 -7.0835 19 6 7.3949 2.7287 -7.7248 20 6 7.8375 4.1466 -7.4701 21 1 8.2988 4.4074 -6.5291 22 6 7.6536 5.1107 -8.4384 23 7 8.0403 6.3479 -8.2163 24 14 6.8564 4.6593 -10.0663 25 1 5.3855 4.8363 -9.9631 26 1 7.3868 5.5396 -11.1382 27 1 7.1629 3.2432 -10.3918 28 6 6.1237 1.9890 -2.4130 29 1 -0.3633 -1.0235 -0.0915 30 1 -0.3634 0.4326 0.9322 31 1 -0.3634 0.5910 -0.8407 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.2780 3.9118 2.0952 35 1 2.3708 3.9475 0.6906 36 1 0.6256 3.6891 0.4542 37 1 3.5708 0.6531 -1.9845 38 1 6.0954 1.0093 -0.4244 39 1 5.4809 -0.9271 -2.4811 40 1 7.1673 -0.3239 -2.1835 41 1 7.2970 -0.1000 -4.6780 42 1 7.9823 1.3223 -3.8560 43 1 9.7507 1.8039 -6.9763 44 1 9.2702 1.1249 -5.4026 45 1 8.6087 -0.0688 -8.1328 46 1 9.8489 -0.6738 -7.0081 47 1 8.1282 -0.7477 -6.5591 48 1 7.9221 2.3340 -8.5934 49 1 6.3214 2.7114 -7.9126 50 1 7.9112 7.0261 -8.8977 51 1 7.1633 2.2674 -2.2402 52 1 5.4750 2.8517 -2.5639 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001373415801.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:57:03 Heat of formation + Delta-G solvation = -101.410980 kcal Electronic energy + Delta-G solvation = -30514.641025 eV Core-core repulsion = 26321.855345 eV Total energy + Delta-G solvation = -4192.785680 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.91784 -40.87797 -40.02184 -38.35683 -36.91609 -35.36672 -34.87967 -34.23428 -32.11020 -31.28332 -29.55646 -28.73603 -27.16794 -27.00333 -25.89362 -24.37019 -23.66212 -23.15614 -21.72373 -20.88506 -19.92604 -19.12820 -18.69243 -18.02246 -17.99144 -17.48018 -17.07884 -16.65075 -16.47011 -16.39990 -15.99829 -15.80978 -15.34033 -15.12787 -14.92379 -14.84974 -14.69733 -14.49748 -14.43402 -13.89052 -13.77700 -13.71789 -13.43693 -13.35427 -13.20884 -12.99906 -12.73411 -12.56089 -12.52774 -12.42541 -12.33033 -12.06486 -12.03742 -11.91659 -11.80842 -11.75907 -11.74614 -11.64712 -10.85191 -10.65713 -10.36598 -10.15625 -9.81973 -9.38164 -8.36084 -6.40904 1.30275 1.34522 1.42993 1.44736 1.86157 1.94010 2.23627 2.29044 2.75333 2.98302 3.04458 3.38360 3.58375 3.66559 3.80572 3.87489 3.92616 4.03375 4.10020 4.31627 4.33297 4.34967 4.40835 4.43471 4.45891 4.46330 4.55033 4.61387 4.64282 4.75739 4.76731 4.79132 4.80477 4.85875 4.91691 5.01551 5.02221 5.09361 5.16478 5.23377 5.40082 5.42475 5.44421 5.46296 5.66302 5.86200 5.96285 6.23634 6.49032 6.60269 6.76943 7.14138 7.20712 7.50680 8.81017 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002364 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.987903 B =11839.424153 C =12816.763872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.111 4.111 3 C 0.073 3.927 4 H 0.104 0.896 5 O -0.376 6.376 6 C 0.025 3.975 7 C 0.490 3.510 8 O -0.573 6.573 9 N -0.691 5.691 10 C 0.121 3.879 11 C 0.008 3.992 12 N -0.471 5.471 13 C 0.013 3.987 14 C 0.498 3.502 15 O -0.581 6.581 16 N -0.605 5.605 17 C 0.098 3.902 18 C -0.159 4.159 19 C 0.227 3.773 20 C -0.533 4.533 21 H 0.026 0.974 22 C 0.009 3.991 23 N -0.947 5.947 24 Si 0.948 3.052 25 H -0.277 1.277 26 H -0.274 1.274 27 H -0.238 1.238 28 C -0.018 4.018 29 H 0.073 0.927 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.101 0.899 33 H 0.069 0.931 34 H 0.100 0.900 35 H 0.027 0.973 36 H 0.063 0.937 37 H 0.417 0.583 38 H 0.110 0.890 39 H 0.112 0.888 40 H 0.112 0.888 41 H 0.135 0.865 42 H 0.091 0.909 43 H 0.068 0.932 44 H 0.096 0.904 45 H 0.043 0.957 46 H 0.094 0.906 47 H 0.064 0.936 48 H 0.047 0.953 49 H 0.015 0.985 50 H 0.268 0.732 51 H 0.087 0.913 52 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.852 -20.645 14.087 26.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.148 4.148 3 C 0.011 3.989 4 H 0.122 0.878 5 O -0.293 6.293 6 C -0.071 4.071 7 C 0.277 3.723 8 O -0.452 6.452 9 N -0.343 5.343 10 C 0.014 3.986 11 C -0.120 4.120 12 N -0.193 5.193 13 C -0.118 4.118 14 C 0.286 3.714 15 O -0.460 6.460 16 N -0.337 5.337 17 C -0.024 4.024 18 C -0.217 4.217 19 C 0.105 3.895 20 C -0.572 4.572 21 H 0.044 0.956 22 C -0.189 4.189 23 N -0.587 5.587 24 Si 0.771 3.229 25 H -0.203 1.203 26 H -0.200 1.200 27 H -0.161 1.161 28 C -0.149 4.149 29 H 0.092 0.908 30 H 0.072 0.928 31 H 0.081 0.919 32 H 0.120 0.880 33 H 0.087 0.913 34 H 0.118 0.882 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.254 0.746 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.130 0.870 41 H 0.152 0.848 42 H 0.109 0.891 43 H 0.087 0.913 44 H 0.114 0.886 45 H 0.063 0.937 46 H 0.113 0.887 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.033 0.967 50 H 0.077 0.923 51 H 0.105 0.895 52 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.504 -20.005 14.318 26.029 hybrid contribution 0.557 1.329 -0.962 1.733 sum -7.947 -18.675 13.356 24.296 Atomic orbital electron populations 1.21709 0.93442 1.02940 1.02311 1.21621 0.98101 0.91020 1.04091 1.22346 0.88775 0.98228 0.89539 0.87795 1.87945 1.88215 1.21715 1.31453 1.22976 0.99761 0.80320 1.04028 1.21982 0.92403 0.76257 0.81635 1.90682 1.65910 1.47626 1.40952 1.45548 1.06715 1.63835 1.18220 1.21909 0.81742 0.96462 0.98499 1.24327 1.03390 0.96364 0.87963 1.68784 1.36808 1.04979 1.08760 1.22673 0.94463 1.01856 0.92804 1.21229 0.83646 0.81690 0.84794 1.90632 1.26464 1.49418 1.79511 1.48095 1.16943 1.48055 1.20608 1.21766 0.83951 0.93802 1.02890 1.22154 1.03642 0.95234 1.00715 1.19231 0.95740 0.89052 0.85496 1.21565 1.39882 0.94216 1.01548 0.95574 1.25873 0.95541 0.94469 1.02982 1.70052 1.49109 1.03007 1.36525 0.85706 0.78647 0.80132 0.78406 1.20277 1.19952 1.16077 1.24455 1.01361 0.96969 0.92090 0.90844 0.92844 0.91942 0.88022 0.91269 0.88171 0.95392 0.91805 0.74592 0.87251 0.86950 0.87015 0.84779 0.89149 0.91318 0.88580 0.93730 0.88739 0.91705 0.93547 0.96727 0.92297 0.89452 0.92825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.76 71.98 0.70 -0.88 16 2 C -0.11 -1.42 5.61 30.60 0.17 -1.24 16 3 C 0.07 1.32 2.51 29.85 0.07 1.40 16 4 H 0.10 1.55 7.83 -2.39 -0.02 1.54 16 5 O -0.38 -8.35 9.53 -129.99 -1.24 -9.59 16 6 C 0.03 0.46 10.79 113.37 1.22 1.69 16 7 C 0.49 11.56 7.10 87.66 0.62 12.18 16 8 O -0.57 -18.54 16.10 15.97 0.26 -18.29 16 9 N -0.69 -13.47 5.29 -441.69 -2.34 -15.81 16 10 C 0.12 2.40 4.59 45.45 0.21 2.61 16 11 C 0.01 0.12 7.45 83.58 0.62 0.74 16 12 N -0.47 -11.56 5.82 -932.52 -5.43 -16.98 16 13 C 0.01 0.33 3.85 85.56 0.33 0.66 16 14 C 0.50 19.64 7.74 87.66 0.68 20.32 16 15 O -0.58 -29.39 16.01 -3.06 -0.05 -29.44 16 16 N -0.60 -23.91 2.46 -826.14 -2.03 -25.94 16 17 C 0.10 2.70 5.93 86.38 0.51 3.21 16 18 C -0.16 -3.19 10.24 71.98 0.74 -2.46 16 19 C 0.23 11.12 4.23 85.63 0.36 11.48 16 20 C -0.53 -31.68 9.94 25.60 0.25 -31.43 16 21 H 0.03 1.73 8.06 -2.91 -0.02 1.71 16 22 C 0.01 0.54 5.47 84.65 0.46 1.01 16 23 N -0.95 -60.52 13.96 21.45 0.30 -60.22 16 24 Si 0.95 44.89 27.47 68.60 1.88 46.78 16 25 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 26 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 27 H -0.24 -10.07 6.54 99.48 0.65 -9.41 16 28 C -0.02 -0.47 7.53 83.58 0.63 0.16 16 29 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.05 0.69 7.97 -2.39 -0.02 0.67 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.10 0.88 7.76 -2.39 -0.02 0.86 16 33 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 34 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.03 0.60 8.11 -2.39 -0.02 0.58 16 36 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 37 H 0.42 6.61 8.46 -92.71 -0.78 5.83 16 38 H 0.11 2.27 7.45 -2.38 -0.02 2.26 16 39 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.11 1.05 7.91 -2.39 -0.02 1.03 16 41 H 0.13 2.35 7.13 -2.39 -0.02 2.33 16 42 H 0.09 1.93 6.56 -2.39 -0.02 1.91 16 43 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 44 H 0.10 2.02 6.44 -2.39 -0.02 2.01 16 45 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 46 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 47 H 0.06 1.14 7.22 -2.38 -0.02 1.12 16 48 H 0.05 2.09 7.13 -2.39 -0.02 2.08 16 49 H 0.01 0.78 6.85 -2.39 -0.02 0.76 16 50 H 0.27 15.91 8.31 -92.71 -0.77 15.14 16 51 H 0.09 2.07 7.42 -2.39 -0.02 2.05 16 52 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 Total: -1.00 -88.85 422.07 -0.99 -89.83 By element: Atomic # 1 Polarization: 20.15 SS G_CDS: 0.06 Total: 20.21 kcal Atomic # 6 Polarization: 11.85 SS G_CDS: 7.59 Total: 19.44 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -9.49 Total: -118.95 kcal Atomic # 8 Polarization: -56.29 SS G_CDS: -1.03 Total: -57.32 kcal Atomic # 14 Polarization: 44.89 SS G_CDS: 1.88 Total: 46.78 kcal Total: -88.85 -0.99 -89.83 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001373415801.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.577 kcal (2) G-P(sol) polarization free energy of solvation -88.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds