Wall clock time and date at job start Wed Apr 1 2020 00:40:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34782 * 120.00014 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99648 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47423 * 300.00045 * 9 7 6 11 11 C 1.52998 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47040 * 60.00485 * 11 10 9 13 13 O 1.42897 * 109.47546 * 59.99382 * 12 11 10 14 14 C 1.53004 * 109.46798 * 299.99333 * 12 11 10 15 15 C 1.52997 * 109.47117 * 179.97438 * 9 7 6 16 16 N 1.46904 * 109.46515 * 294.60907 * 3 2 1 17 17 C 1.46898 * 111.00005 * 300.91809 * 16 3 2 18 18 C 1.50704 * 109.47322 * 185.68035 * 17 16 3 19 19 O 1.21289 * 119.99610 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99985 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00116 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99527 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 119.99897 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47542 * 59.99899 * 25 23 21 27 27 H 1.48500 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47119 * 299.99476 * 25 23 21 29 29 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 30 30 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 31 31 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09005 * 109.47259 * 119.99300 * 2 1 3 34 34 H 1.08992 * 109.47306 * 294.99541 * 5 3 2 35 35 H 1.09004 * 109.47431 * 54.99942 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.09000 * 109.47311 * 59.99994 * 9 7 6 38 38 H 1.09000 * 109.46836 * 300.00240 * 10 9 7 39 39 H 1.09001 * 109.47166 * 59.99797 * 10 9 7 40 40 H 1.08991 * 109.47467 * 299.99805 * 11 10 9 41 41 H 1.09008 * 109.46580 * 179.97438 * 11 10 9 42 42 H 1.09002 * 109.46755 * 179.97438 * 12 11 10 43 43 H 0.96701 * 114.00084 * 59.99897 * 13 12 11 44 44 H 1.08991 * 109.47101 * 300.00308 * 14 12 11 45 45 H 1.08999 * 109.47019 * 179.97438 * 14 12 11 46 46 H 1.08992 * 109.47422 * 300.00138 * 15 9 7 47 47 H 1.09004 * 109.47069 * 60.00388 * 15 9 7 48 48 H 1.00895 * 110.99984 * 64.87603 * 16 3 2 49 49 H 1.09002 * 109.46957 * 65.67870 * 17 16 3 50 50 H 1.09003 * 109.47745 * 305.68139 * 17 16 3 51 51 H 0.96994 * 120.00423 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99164 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1615 2.1492 0.2841 9 6 5.8983 4.4748 -0.0191 10 6 5.5076 5.0417 -1.3855 11 6 6.0283 6.4749 -1.5108 12 6 7.5522 6.4777 -1.3743 13 8 8.1243 5.6711 -2.4059 14 6 7.9429 5.9108 -0.0079 15 6 7.4221 4.4771 0.1178 16 7 1.6594 2.0964 -1.2593 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1537 -3.6740 19 8 1.3123 3.1984 -3.6158 20 7 2.3453 1.6840 -4.8655 21 6 2.0801 2.3880 -6.0117 22 1 1.5346 3.3186 -5.9598 23 6 2.5131 1.9040 -7.2402 24 7 3.1773 0.7718 -7.3031 25 14 2.1523 2.8635 -8.8017 26 1 2.7701 4.2107 -8.7089 27 1 2.7172 2.1398 -9.9690 28 1 0.6833 3.0029 -8.9687 29 1 -0.3633 -1.0275 -0.0203 30 1 -0.3634 0.4961 0.9000 31 1 -0.3633 0.5314 -0.8796 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8427 1.0403 1.1085 35 1 3.9997 0.8296 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.4623 5.0903 0.7677 38 1 5.9437 4.4262 -2.1723 39 1 4.4220 5.0401 -1.4826 40 1 5.5919 7.0901 -0.7240 41 1 5.7503 6.8785 -2.4845 42 1 7.9231 7.4987 -1.4641 43 1 7.9175 5.9725 -3.3011 44 1 7.5065 6.5261 0.7788 45 1 9.0285 5.9124 0.0891 46 1 7.7001 4.0735 1.0913 47 1 7.8586 3.8616 -0.6689 48 1 0.6567 2.1787 -1.3352 49 1 1.7651 0.3911 -2.4816 50 1 3.2962 1.2787 -2.2918 51 1 2.8356 0.8484 -4.9121 52 1 3.4799 0.4342 -8.1607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481807708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:31 Heat of formation + Delta-G solvation = -148.767365 kcal Electronic energy + Delta-G solvation = -31366.942333 eV Core-core repulsion = 27172.103126 eV Total energy + Delta-G solvation = -4194.839207 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.24444 -38.94778 -38.24130 -37.23335 -34.95335 -34.08705 -33.84455 -31.79377 -31.16501 -30.91138 -30.32633 -28.45633 -26.55766 -24.38382 -23.93112 -22.84113 -22.52843 -20.50814 -20.22315 -19.55324 -19.05245 -17.91494 -17.15675 -16.81773 -16.76868 -16.05448 -15.67037 -15.41798 -15.06804 -14.89750 -14.56242 -14.26483 -14.16246 -13.94039 -13.88070 -13.48323 -13.45180 -13.24260 -12.96743 -12.61776 -12.37385 -12.29261 -12.19780 -12.06563 -11.86770 -11.76222 -11.50674 -11.43579 -11.28982 -11.09510 -11.06066 -10.85571 -10.76996 -10.58036 -10.44905 -10.24016 -10.21178 -9.87646 -9.49636 -9.48716 -8.86880 -8.50618 -8.07744 -7.95524 -6.40987 -3.82026 2.81540 3.19238 3.25394 3.28973 3.32947 3.91564 4.09372 4.17390 4.33949 4.55520 4.62920 4.64789 4.76753 4.87313 4.97981 5.00473 5.11653 5.14260 5.17201 5.25415 5.28765 5.29370 5.37741 5.41379 5.44240 5.58426 5.61444 5.70625 5.72012 5.76665 5.81852 5.87297 5.88566 5.93298 6.00840 6.08023 6.14255 6.16686 6.20113 6.27383 6.27843 6.45611 6.61278 7.14521 7.54856 7.57273 7.61818 7.73409 8.06208 8.42305 8.61716 9.18153 9.55183 10.06489 10.76630 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006997 B = 0.003956 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.035911 B = 7075.929005 C =10192.969649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.161 4.161 3 C 0.074 3.926 4 H 0.089 0.911 5 C 0.126 3.874 6 N -0.714 5.714 7 C 0.516 3.484 8 O -0.549 6.549 9 C -0.102 4.102 10 C -0.107 4.107 11 C -0.150 4.150 12 C 0.103 3.897 13 O -0.562 6.562 14 C -0.111 4.111 15 C -0.095 4.095 16 N -0.658 5.658 17 C 0.044 3.956 18 C 0.443 3.557 19 O -0.584 6.584 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.102 0.898 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.274 1.274 27 H -0.284 1.284 28 H -0.274 1.274 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.410 0.590 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.070 0.930 42 H 0.052 0.948 43 H 0.378 0.622 44 H 0.073 0.927 45 H 0.069 0.931 46 H 0.065 0.935 47 H 0.079 0.921 48 H 0.351 0.649 49 H 0.047 0.953 50 H 0.087 0.913 51 H 0.391 0.609 52 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.422 5.764 16.541 17.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.201 4.201 3 C -0.037 4.037 4 H 0.107 0.893 5 C 0.001 3.999 6 N -0.366 5.366 7 C 0.302 3.698 8 O -0.427 6.427 9 C -0.124 4.124 10 C -0.145 4.145 11 C -0.187 4.187 12 C 0.044 3.956 13 O -0.368 6.368 14 C -0.149 4.149 15 C -0.132 4.132 16 N -0.290 5.290 17 C -0.089 4.089 18 C 0.228 3.772 19 O -0.468 6.468 20 N -0.200 5.200 21 C -0.429 4.429 22 H 0.120 0.880 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.199 1.199 27 H -0.210 1.210 28 H -0.200 1.200 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.246 0.754 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.089 0.911 42 H 0.070 0.930 43 H 0.225 0.775 44 H 0.092 0.908 45 H 0.088 0.912 46 H 0.083 0.917 47 H 0.098 0.902 48 H 0.172 0.828 49 H 0.065 0.935 50 H 0.105 0.895 51 H 0.225 0.775 52 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 4.368 5.838 17.069 18.561 hybrid contribution -1.036 -0.319 -1.505 1.854 sum 3.332 5.519 15.564 16.847 Atomic orbital electron populations 1.21752 0.95295 1.01955 1.01982 1.22216 0.96732 0.98046 1.03058 1.21917 0.94427 0.93479 0.93883 0.89326 1.21378 0.92793 0.84118 1.01567 1.45846 1.07511 1.09941 1.73256 1.20649 0.82102 0.91220 0.75807 1.90674 1.56106 1.46612 1.49323 1.21314 0.97933 0.93384 0.99744 1.21428 1.01379 0.95968 0.95724 1.22235 0.96265 0.97501 1.02746 1.21789 0.91914 0.93188 0.88724 1.86534 1.76223 1.56517 1.17505 1.21572 1.01463 0.97006 0.94844 1.21250 0.92623 0.96315 1.03053 1.60195 1.17969 1.51264 0.99593 1.21764 1.00966 0.95402 0.90760 1.19780 0.85282 0.87844 0.84292 1.90509 1.45006 1.24837 1.86467 1.41858 1.49888 1.23091 1.05152 1.19625 1.33892 1.05998 0.83433 0.88050 1.25251 0.96738 0.96443 0.99424 1.69611 1.37804 1.19856 1.26913 0.85939 0.78763 0.79287 0.80337 1.19930 1.20978 1.19953 0.92524 0.92594 0.92450 0.91044 0.91362 0.91507 0.91499 0.75410 0.89137 0.90532 0.90825 0.91002 0.91148 0.93046 0.77524 0.90849 0.91179 0.91661 0.90216 0.82803 0.93546 0.89524 0.77545 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.71 37.16 0.36 -1.09 16 2 C -0.16 -1.61 5.17 -26.73 -0.14 -1.74 16 3 C 0.07 0.81 2.70 -67.71 -0.18 0.62 16 4 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 5 C 0.13 1.56 4.70 -4.04 -0.02 1.54 16 6 N -0.71 -9.15 5.28 -60.30 -0.32 -9.47 16 7 C 0.52 7.44 7.15 -10.99 -0.08 7.36 16 8 O -0.55 -9.87 15.98 5.56 0.09 -9.78 16 9 C -0.10 -1.20 2.52 -91.78 -0.23 -1.43 16 10 C -0.11 -1.30 4.95 -26.73 -0.13 -1.44 16 11 C -0.15 -1.46 5.64 -26.73 -0.15 -1.61 16 12 C 0.10 1.00 3.77 -26.73 -0.10 0.90 16 13 O -0.56 -6.52 11.97 -35.23 -0.42 -6.94 16 14 C -0.11 -1.07 5.67 -26.70 -0.15 -1.22 16 15 C -0.09 -1.14 4.35 -26.71 -0.12 -1.26 16 16 N -0.66 -9.30 5.35 -107.99 -0.58 -9.88 16 17 C 0.04 0.74 5.34 -4.98 -0.03 0.71 16 18 C 0.44 10.12 7.83 -10.99 -0.09 10.04 16 19 O -0.58 -15.15 15.90 5.55 0.09 -15.06 16 20 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 21 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 22 H 0.10 2.92 7.16 -52.49 -0.38 2.55 16 23 C 0.02 0.62 5.50 -17.47 -0.10 0.52 16 24 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 25 Si 0.93 20.95 29.55 -169.99 -5.02 15.92 16 26 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.62 6.85 -51.93 -0.36 0.26 16 32 H 0.07 0.80 6.23 -51.93 -0.32 0.48 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.95 6.57 -51.93 -0.34 0.61 16 36 H 0.41 4.96 7.56 -40.82 -0.31 4.65 16 37 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.08 1.13 7.68 -51.93 -0.40 0.73 16 39 H 0.07 0.94 7.57 -51.93 -0.39 0.55 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 42 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.38 3.20 9.08 45.56 0.41 3.61 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 45 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.06 0.78 8.10 -51.93 -0.42 0.36 16 47 H 0.08 1.19 7.64 -51.93 -0.40 0.79 16 48 H 0.35 5.11 7.23 -39.29 -0.28 4.82 16 49 H 0.05 0.73 6.49 -51.93 -0.34 0.39 16 50 H 0.09 1.48 6.15 -51.93 -0.32 1.16 16 51 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 52 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 408.47 15.07 6.16 6.16 Total: -1.00 -33.05 408.47 -8.59 -41.63 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -7.95 Total: 21.98 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: -1.29 Total: 3.48 kcal Atomic # 7 Polarization: -57.15 SS G_CDS: -0.23 Total: -57.38 kcal Atomic # 8 Polarization: -31.54 SS G_CDS: -0.24 Total: -31.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.05 -8.59 -41.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481807708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.137 kcal (2) G-P(sol) polarization free energy of solvation -33.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.585 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds