Wall clock time and date at job start Wed Apr 1 2020 00:40:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53007 * 109.47241 * 2 1 4 4 H 1.08994 * 109.46886 * 54.60613 * 3 2 1 5 5 C 1.52995 * 109.47130 * 174.60903 * 3 2 1 6 6 N 1.46506 * 109.46834 * 174.99845 * 5 3 2 7 7 C 1.34782 * 120.00014 * 179.97438 * 6 5 3 8 8 O 1.21280 * 119.99648 * 359.97438 * 7 6 5 9 9 C 1.50690 * 120.00050 * 179.97438 * 7 6 5 10 10 C 1.53000 * 109.47423 * 300.00045 * 9 7 6 11 11 C 1.52998 * 109.47093 * 179.97438 * 10 9 7 12 12 C 1.53001 * 109.47040 * 60.00485 * 11 10 9 13 13 O 1.42897 * 109.47546 * 59.99382 * 12 11 10 14 14 C 1.53004 * 109.46798 * 299.99333 * 12 11 10 15 15 C 1.52997 * 109.47117 * 179.97438 * 9 7 6 16 16 N 1.46904 * 109.46515 * 294.60907 * 3 2 1 17 17 C 1.46898 * 111.00005 * 300.91809 * 16 3 2 18 18 C 1.50704 * 109.47322 * 185.68035 * 17 16 3 19 19 O 1.21289 * 119.99610 * 359.97438 * 18 17 16 20 20 N 1.34771 * 119.99985 * 180.02562 * 18 17 16 21 21 C 1.37103 * 119.99875 * 180.02562 * 20 18 17 22 22 H 1.08002 * 119.99503 * 359.97438 * 21 20 18 23 23 C 1.38952 * 120.00116 * 179.97438 * 21 20 18 24 24 N 1.31414 * 119.99527 * 359.97438 * 23 21 20 25 25 Si 1.86792 * 119.99897 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47542 * 59.99899 * 25 23 21 27 27 H 1.48500 * 109.47127 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.47119 * 299.99476 * 25 23 21 29 29 H 1.09001 * 109.47071 * 178.86795 * 1 2 3 30 30 H 1.09001 * 109.47230 * 298.86251 * 1 2 3 31 31 H 1.08997 * 109.47227 * 58.86001 * 1 2 3 32 32 H 1.08999 * 109.47468 * 239.99684 * 2 1 3 33 33 H 1.09005 * 109.47259 * 119.99300 * 2 1 3 34 34 H 1.08992 * 109.47306 * 294.99541 * 5 3 2 35 35 H 1.09004 * 109.47431 * 54.99942 * 5 3 2 36 36 H 0.96995 * 119.99880 * 359.97438 * 6 5 3 37 37 H 1.09000 * 109.47311 * 59.99994 * 9 7 6 38 38 H 1.09000 * 109.46836 * 300.00240 * 10 9 7 39 39 H 1.09001 * 109.47166 * 59.99797 * 10 9 7 40 40 H 1.08991 * 109.47467 * 299.99805 * 11 10 9 41 41 H 1.09008 * 109.46580 * 179.97438 * 11 10 9 42 42 H 1.09002 * 109.46755 * 179.97438 * 12 11 10 43 43 H 0.96701 * 114.00084 * 59.99897 * 13 12 11 44 44 H 1.08991 * 109.47101 * 300.00308 * 14 12 11 45 45 H 1.08999 * 109.47019 * 179.97438 * 14 12 11 46 46 H 1.08992 * 109.47422 * 300.00138 * 15 9 7 47 47 H 1.09004 * 109.47069 * 60.00388 * 15 9 7 48 48 H 1.00895 * 110.99984 * 64.87603 * 16 3 2 49 49 H 1.09002 * 109.46957 * 65.67870 * 17 16 3 50 50 H 1.09003 * 109.47745 * 305.68139 * 17 16 3 51 51 H 0.96994 * 120.00423 * 359.97438 * 20 18 17 52 52 H 0.97004 * 119.99164 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6000 1.9835 0.8377 5 6 3.5639 1.4446 0.1355 6 7 4.0629 2.8169 0.0158 7 6 5.3850 3.0634 0.1046 8 8 6.1615 2.1492 0.2841 9 6 5.8983 4.4748 -0.0191 10 6 5.5076 5.0417 -1.3855 11 6 6.0283 6.4749 -1.5108 12 6 7.5522 6.4777 -1.3743 13 8 8.1243 5.6711 -2.4059 14 6 7.9429 5.9108 -0.0079 15 6 7.4221 4.4771 0.1178 16 7 1.6594 2.0964 -1.2593 17 6 2.2178 1.3803 -2.4140 18 6 1.9258 2.1537 -3.6740 19 8 1.3123 3.1984 -3.6158 20 7 2.3453 1.6840 -4.8655 21 6 2.0801 2.3880 -6.0117 22 1 1.5346 3.3186 -5.9598 23 6 2.5131 1.9040 -7.2402 24 7 3.1773 0.7718 -7.3031 25 14 2.1523 2.8635 -8.8017 26 1 2.7701 4.2107 -8.7089 27 1 2.7172 2.1398 -9.9690 28 1 0.6833 3.0029 -8.9687 29 1 -0.3633 -1.0275 -0.0203 30 1 -0.3634 0.4961 0.9000 31 1 -0.3633 0.5314 -0.8796 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.8427 1.0403 1.1085 35 1 3.9997 0.8296 -0.6519 36 1 3.4418 3.5480 -0.1274 37 1 5.4623 5.0903 0.7677 38 1 5.9437 4.4262 -2.1723 39 1 4.4220 5.0401 -1.4826 40 1 5.5919 7.0901 -0.7240 41 1 5.7503 6.8785 -2.4845 42 1 7.9231 7.4987 -1.4641 43 1 7.9175 5.9725 -3.3011 44 1 7.5065 6.5261 0.7788 45 1 9.0285 5.9124 0.0891 46 1 7.7001 4.0735 1.0913 47 1 7.8586 3.8616 -0.6689 48 1 0.6567 2.1787 -1.3352 49 1 1.7651 0.3911 -2.4816 50 1 3.2962 1.2787 -2.2918 51 1 2.8356 0.8484 -4.9121 52 1 3.4799 0.4342 -8.1607 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481807708.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:40:30 Heat of formation + Delta-G solvation = -175.696158 kcal Electronic energy + Delta-G solvation = -31368.110053 eV Core-core repulsion = 27172.103126 eV Total energy + Delta-G solvation = -4196.006927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.31351 -40.33750 -39.44073 -38.56184 -35.95076 -35.89115 -35.11019 -33.30398 -32.78804 -31.79485 -31.23459 -29.52658 -28.07188 -26.09599 -24.95768 -23.73296 -23.40816 -21.77465 -21.27117 -20.74011 -20.36611 -19.85008 -18.32229 -18.15620 -17.66800 -17.11662 -17.08242 -16.54837 -16.47511 -16.13571 -15.88797 -15.74159 -15.40504 -15.21315 -15.03898 -14.78886 -14.48985 -14.24256 -14.03467 -13.92609 -13.57711 -13.52230 -13.22717 -13.18776 -13.10586 -12.97711 -12.88038 -12.71096 -12.42552 -12.35458 -12.23433 -12.13607 -11.95313 -11.83336 -11.68723 -11.53786 -11.47919 -11.12004 -10.79962 -10.51592 -10.33173 -10.00581 -9.98173 -9.34258 -8.45543 -5.94471 1.39575 1.41117 1.52240 1.67225 2.06599 2.26670 2.31382 2.94268 3.21714 3.42680 3.53290 3.64390 3.73262 3.77864 3.88905 4.01944 4.14271 4.15260 4.25705 4.27494 4.28057 4.34965 4.42537 4.45577 4.49553 4.53526 4.57445 4.57604 4.75023 4.79149 4.82871 4.92872 4.94848 5.07050 5.10740 5.11363 5.24227 5.24909 5.26537 5.31833 5.36958 5.40843 5.47159 5.55634 5.87679 6.08239 6.40955 6.60062 6.64648 6.92163 7.13173 7.31504 7.57183 8.11633 8.71791 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.006997 B = 0.003956 C = 0.002746 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4001.035911 B = 7075.929005 C =10192.969649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.157 4.157 3 C 0.085 3.915 4 H 0.114 0.886 5 C 0.124 3.876 6 N -0.706 5.706 7 C 0.508 3.492 8 O -0.591 6.591 9 C -0.095 4.095 10 C -0.102 4.102 11 C -0.144 4.144 12 C 0.098 3.902 13 O -0.588 6.588 14 C -0.109 4.109 15 C -0.091 4.091 16 N -0.662 5.662 17 C 0.063 3.937 18 C 0.442 3.558 19 O -0.614 6.614 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.082 0.918 23 C -0.014 4.014 24 N -0.923 5.923 25 Si 0.992 3.008 26 H -0.271 1.271 27 H -0.273 1.273 28 H -0.270 1.270 29 H 0.061 0.939 30 H 0.071 0.929 31 H 0.041 0.959 32 H 0.057 0.943 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.045 0.955 36 H 0.415 0.585 37 H 0.125 0.875 38 H 0.039 0.961 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.076 0.924 43 H 0.387 0.613 44 H 0.103 0.897 45 H 0.070 0.930 46 H 0.063 0.937 47 H 0.040 0.960 48 H 0.352 0.648 49 H 0.064 0.936 50 H 0.086 0.914 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.732 7.041 17.949 19.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.197 4.197 3 C -0.025 4.025 4 H 0.132 0.868 5 C 0.000 4.000 6 N -0.357 5.357 7 C 0.296 3.704 8 O -0.472 6.472 9 C -0.116 4.116 10 C -0.140 4.140 11 C -0.182 4.182 12 C 0.040 3.960 13 O -0.396 6.396 14 C -0.146 4.146 15 C -0.129 4.129 16 N -0.295 5.295 17 C -0.069 4.069 18 C 0.230 3.770 19 O -0.500 6.500 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.100 0.900 23 C -0.214 4.214 24 N -0.564 5.564 25 Si 0.816 3.184 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.195 1.195 29 H 0.080 0.920 30 H 0.090 0.910 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.105 0.895 34 H 0.096 0.904 35 H 0.063 0.937 36 H 0.252 0.748 37 H 0.143 0.857 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.236 0.764 44 H 0.122 0.878 45 H 0.088 0.912 46 H 0.081 0.919 47 H 0.059 0.941 48 H 0.173 0.827 49 H 0.082 0.918 50 H 0.104 0.896 51 H 0.225 0.775 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.655 7.115 18.490 20.146 hybrid contribution -0.839 -0.749 -1.875 2.187 sum 2.816 6.365 16.615 18.014 Atomic orbital electron populations 1.21737 0.94642 1.02337 1.02022 1.22177 0.97169 0.97021 1.03294 1.21953 0.93362 0.94458 0.92745 0.86794 1.21440 0.93620 0.83588 1.01374 1.45854 1.07214 1.10380 1.72263 1.21204 0.82217 0.92013 0.74979 1.90650 1.57109 1.48054 1.51417 1.21333 0.97783 0.92087 1.00398 1.21338 1.00587 0.97290 0.94796 1.22231 0.96437 0.95767 1.03752 1.21977 0.91742 0.94077 0.88212 1.86515 1.76713 1.57701 1.18668 1.21625 1.01643 0.95500 0.95811 1.21175 0.92732 0.97605 1.01401 1.60150 1.17929 1.51639 0.99751 1.21492 1.01164 0.95295 0.88953 1.20776 0.83418 0.87516 0.85334 1.90477 1.46008 1.26360 1.87195 1.41960 1.50641 1.23202 1.05543 1.19633 1.35208 1.06147 0.85057 0.90025 1.26050 0.96090 0.97258 1.01972 1.69689 1.38113 1.20797 1.27842 0.85000 0.78720 0.78038 0.76671 1.19595 1.19787 1.19485 0.91967 0.91022 0.93974 0.92472 0.89519 0.90351 0.93714 0.74794 0.85750 0.94242 0.91595 0.88388 0.91188 0.90626 0.76413 0.87825 0.91168 0.91859 0.94131 0.82711 0.91836 0.89594 0.77463 0.91438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.71 71.98 0.70 -1.82 16 2 C -0.16 -2.81 5.17 30.60 0.16 -2.65 16 3 C 0.08 1.69 2.70 44.92 0.12 1.81 16 4 H 0.11 1.81 8.14 -2.39 -0.02 1.79 16 5 C 0.12 2.96 4.70 86.38 0.41 3.36 16 6 N -0.71 -17.68 5.28 -463.06 -2.45 -20.12 16 7 C 0.51 14.73 7.15 87.65 0.63 15.36 16 8 O -0.59 -21.90 15.98 -3.03 -0.05 -21.94 16 9 C -0.10 -2.16 2.52 -11.54 -0.03 -2.19 16 10 C -0.10 -2.48 4.95 30.59 0.15 -2.33 16 11 C -0.14 -2.57 5.64 30.59 0.17 -2.39 16 12 C 0.10 1.75 3.77 30.60 0.12 1.87 16 13 O -0.59 -13.78 11.97 -148.98 -1.78 -15.57 16 14 C -0.11 -1.89 5.67 30.61 0.17 -1.72 16 15 C -0.09 -2.19 4.35 30.61 0.13 -2.05 16 16 N -0.66 -18.06 5.35 -495.56 -2.65 -20.72 16 17 C 0.06 2.15 5.34 85.56 0.46 2.60 16 18 C 0.44 20.63 7.83 87.66 0.69 21.32 16 19 O -0.61 -32.46 15.90 -3.06 -0.05 -32.51 16 20 N -0.58 -29.77 5.29 -306.98 -1.62 -31.40 16 21 C -0.33 -18.74 9.68 84.04 0.81 -17.93 16 22 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 23 C -0.01 -0.77 5.50 84.93 0.47 -0.30 16 24 N -0.92 -50.76 13.05 21.66 0.28 -50.47 16 25 Si 0.99 42.97 29.55 68.60 2.03 45.00 16 26 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 28 H -0.27 -11.43 7.11 99.48 0.71 -10.73 16 29 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.04 0.84 6.85 -2.39 -0.02 0.82 16 32 H 0.06 1.20 6.23 -2.39 -0.01 1.19 16 33 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 34 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 35 H 0.04 1.28 6.57 -2.38 -0.02 1.27 16 36 H 0.41 9.55 7.56 -92.71 -0.70 8.85 16 37 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 38 H 0.04 1.23 7.68 -2.39 -0.02 1.22 16 39 H 0.07 1.67 7.57 -2.39 -0.02 1.66 16 40 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 41 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 43 H 0.39 6.75 9.08 -74.06 -0.67 6.07 16 44 H 0.10 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 46 H 0.06 1.51 8.10 -2.39 -0.02 1.50 16 47 H 0.04 1.28 7.64 -2.38 -0.02 1.26 16 48 H 0.35 9.83 7.23 -89.70 -0.65 9.18 16 49 H 0.06 1.96 6.49 -2.39 -0.02 1.95 16 50 H 0.09 2.97 6.15 -2.39 -0.01 2.96 16 51 H 0.39 19.79 7.90 -92.71 -0.73 19.06 16 52 H 0.28 14.31 8.31 -92.70 -0.77 13.54 16 Total: -1.00 -74.04 408.47 -2.93 -76.97 By element: Atomic # 1 Polarization: 59.61 SS G_CDS: -1.79 Total: 57.82 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: 5.15 Total: 12.94 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -6.44 Total: -122.71 kcal Atomic # 8 Polarization: -68.14 SS G_CDS: -1.88 Total: -70.02 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Total: -74.04 -2.93 -76.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481807708.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.727 kcal (2) G-P(sol) polarization free energy of solvation -74.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -175.696 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds