Wall clock time and date at job start Wed Apr 1 2020 00:30:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47456 * 2 1 4 4 H 1.09001 * 109.46707 * 305.60971 * 3 2 1 5 5 C 1.52993 * 109.46868 * 65.61139 * 3 2 1 6 6 N 1.46497 * 109.46869 * 175.00020 * 5 3 2 7 7 C 1.34778 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00016 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00088 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.43701 * 57.45527 * 9 7 6 11 11 C 1.54811 * 110.60063 * 294.83193 * 9 7 6 12 12 C 1.54996 * 102.09208 * 262.14757 * 11 9 7 13 13 O 1.44376 * 103.49431 * 322.97683 * 12 11 9 14 14 C 1.43742 * 106.97483 * 40.05663 * 13 12 11 15 15 H 1.09004 * 110.00268 * 92.97890 * 14 13 12 16 16 C 1.53001 * 109.88393 * 214.06608 * 14 13 12 17 17 C 1.53002 * 109.46601 * 292.83362 * 16 14 13 18 18 N 1.46897 * 109.47217 * 185.61575 * 3 2 1 19 19 C 1.46903 * 111.00298 * 85.96628 * 18 3 2 20 20 C 1.50700 * 109.46958 * 174.53400 * 19 18 3 21 21 O 1.21289 * 120.00133 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99640 * 180.02562 * 20 19 18 23 23 C 1.37093 * 120.00121 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00171 * 0.02562 * 23 22 20 25 25 C 1.38955 * 120.00315 * 180.02562 * 23 22 20 26 26 N 1.31405 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00013 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47568 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47486 * 119.99736 * 27 25 23 30 30 H 1.48497 * 109.47232 * 239.99980 * 27 25 23 31 31 H 1.09006 * 109.47262 * 63.34078 * 1 2 3 32 32 H 1.08997 * 109.47281 * 183.34228 * 1 2 3 33 33 H 1.09009 * 109.47023 * 303.34331 * 1 2 3 34 34 H 1.09010 * 109.46998 * 240.00136 * 2 1 3 35 35 H 1.09000 * 109.47333 * 120.00342 * 2 1 3 36 36 H 1.09004 * 109.47085 * 55.00348 * 5 3 2 37 37 H 1.09001 * 109.47487 * 295.00178 * 5 3 2 38 38 H 0.96997 * 120.00392 * 0.02562 * 6 5 3 39 39 H 1.08999 * 110.90722 * 20.34984 * 11 9 7 40 40 H 1.09001 * 110.90799 * 143.91757 * 11 9 7 41 41 H 1.08996 * 110.61599 * 81.47914 * 12 11 9 42 42 H 1.09003 * 110.61378 * 204.31786 * 12 11 9 43 43 H 1.08999 * 109.47075 * 52.83188 * 16 14 13 44 44 H 1.08998 * 109.47107 * 172.83564 * 16 14 13 45 45 H 1.08999 * 109.47264 * 299.99710 * 17 16 14 46 46 H 1.08995 * 109.47473 * 59.99825 * 17 16 14 47 47 H 1.09003 * 109.46761 * 180.02562 * 17 16 14 48 48 H 1.00912 * 110.99781 * 322.01345 * 18 3 2 49 49 H 1.09000 * 109.46760 * 294.53396 * 19 18 3 50 50 H 1.08998 * 109.46713 * 54.53660 * 19 18 3 51 51 H 0.97005 * 120.00262 * 0.02562 * 22 20 19 52 52 H 0.96995 * 120.00517 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 -0.8355 5 6 1.6485 2.1218 1.3137 6 7 2.2379 3.4620 1.3650 7 6 2.0266 4.2505 2.4375 8 8 1.3482 3.8508 3.3598 9 6 2.6325 5.6294 2.4900 10 1 2.3090 6.2202 1.6330 11 6 4.1776 5.5440 2.5371 12 6 4.4651 5.6966 4.0524 13 8 3.4774 6.6553 4.4880 14 6 2.2530 6.3356 3.8061 15 1 1.6461 5.6713 4.4214 16 6 1.4760 7.6182 3.5029 17 6 0.9967 8.2458 4.8134 18 7 3.5027 1.4447 -0.1355 19 6 3.9007 1.3936 -1.5487 20 6 5.3975 1.5325 -1.6544 21 8 6.0670 1.6609 -0.6512 22 7 5.9922 1.5141 -2.8637 23 6 7.3539 1.6410 -2.9600 24 1 7.9501 1.7553 -2.0667 25 6 7.9670 1.6225 -4.2068 26 7 7.2416 1.4840 -5.2937 27 14 9.8224 1.7947 -4.3379 28 1 10.4037 1.9369 -2.9787 29 1 10.3864 0.5879 -4.9941 30 1 10.1522 2.9968 -5.1449 31 1 -0.3634 0.4611 -0.9185 32 1 -0.3634 -1.0259 0.0599 33 1 -0.3633 0.5649 0.8586 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.0167 1.5306 2.1523 37 1 0.5629 2.1998 1.3731 38 1 2.7803 3.7819 0.6272 39 1 4.5251 4.5781 2.1705 40 1 4.6296 6.3584 1.9709 41 1 4.3294 4.7452 4.5666 42 1 5.4728 6.0792 4.2152 43 1 2.1245 8.3207 2.9794 44 1 0.6154 7.3823 2.8769 45 1 0.3482 7.5433 5.3369 46 1 1.8572 8.4817 5.4394 47 1 0.4427 9.1594 4.5974 48 1 3.9151 0.6841 0.3840 49 1 3.5929 0.4404 -1.9786 50 1 3.4210 2.2086 -2.0908 51 1 5.4567 1.4119 -3.6661 52 1 7.6695 1.4715 -6.1641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481835291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:23 Heat of formation + Delta-G solvation = -139.057322 kcal Electronic energy + Delta-G solvation = -30517.030694 eV Core-core repulsion = 26322.612546 eV Total energy + Delta-G solvation = -4194.418148 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.65250 -38.92906 -38.30536 -37.22519 -34.25228 -33.94284 -33.68839 -32.62600 -32.30632 -31.25726 -28.74438 -28.23740 -26.27775 -24.60978 -23.74733 -23.34931 -22.48881 -21.27372 -20.92178 -19.89551 -19.33702 -17.98154 -17.47300 -16.58110 -16.27890 -16.05488 -15.69299 -15.61780 -15.30336 -15.07225 -14.64002 -14.54431 -14.06035 -13.91998 -13.71091 -13.67623 -13.49971 -13.39105 -13.19981 -13.08145 -12.79806 -12.28390 -12.19623 -12.08521 -11.80360 -11.72056 -11.57428 -11.49883 -11.47067 -11.26846 -11.19075 -11.10905 -10.96931 -10.91029 -10.79979 -10.39102 -10.28095 -9.94111 -9.59770 -9.57651 -9.01805 -8.59322 -8.15231 -8.02362 -6.47723 -3.88626 2.57312 3.11873 3.12564 3.23155 3.29882 3.72688 3.83719 3.97333 4.22587 4.35031 4.48762 4.62043 4.64492 4.77641 4.85930 4.98223 5.00124 5.02545 5.07427 5.14645 5.16044 5.22748 5.23870 5.29642 5.34218 5.51515 5.58915 5.62158 5.65509 5.69875 5.70781 5.75450 5.78355 5.79722 5.83018 5.85132 5.86234 5.97209 6.04390 6.05883 6.15094 6.19956 6.45881 6.79011 7.05093 7.48620 7.49721 7.54626 8.00188 8.20225 8.54698 9.12193 9.47990 9.99041 10.69968 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009737 B = 0.002628 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.816502 B =10653.164089 C =12905.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.152 4.152 3 C 0.072 3.928 4 H 0.084 0.916 5 C 0.133 3.867 6 N -0.708 5.708 7 C 0.520 3.480 8 O -0.548 6.548 9 C -0.144 4.144 10 H 0.110 0.890 11 C -0.146 4.146 12 C 0.048 3.952 13 O -0.372 6.372 14 C 0.085 3.915 15 H 0.093 0.907 16 C -0.121 4.121 17 C -0.148 4.148 18 N -0.662 5.662 19 C 0.050 3.950 20 C 0.440 3.560 21 O -0.581 6.581 22 N -0.564 5.564 23 C -0.299 4.299 24 H 0.103 0.897 25 C 0.022 3.978 26 N -0.901 5.901 27 Si 0.929 3.071 28 H -0.268 1.268 29 H -0.282 1.282 30 H -0.281 1.281 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.070 0.930 38 H 0.411 0.589 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.061 0.939 42 H 0.096 0.904 43 H 0.069 0.931 44 H 0.072 0.928 45 H 0.053 0.947 46 H 0.061 0.939 47 H 0.052 0.948 48 H 0.352 0.648 49 H 0.045 0.955 50 H 0.085 0.915 51 H 0.392 0.608 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.515 5.658 10.696 18.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.192 4.192 3 C -0.039 4.039 4 H 0.102 0.898 5 C 0.009 3.991 6 N -0.359 5.359 7 C 0.306 3.694 8 O -0.427 6.427 9 C -0.166 4.166 10 H 0.128 0.872 11 C -0.184 4.184 12 C -0.029 4.029 13 O -0.291 6.291 14 C 0.027 3.973 15 H 0.111 0.889 16 C -0.158 4.158 17 C -0.206 4.206 18 N -0.294 5.294 19 C -0.083 4.083 20 C 0.225 3.775 21 O -0.465 6.465 22 N -0.201 5.201 23 C -0.428 4.428 24 H 0.121 0.879 25 C -0.179 4.179 26 N -0.543 5.543 27 Si 0.756 3.244 28 H -0.192 1.192 29 H -0.208 1.208 30 H -0.207 1.207 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.088 0.912 38 H 0.247 0.753 39 H 0.112 0.888 40 H 0.107 0.893 41 H 0.079 0.921 42 H 0.114 0.886 43 H 0.088 0.912 44 H 0.090 0.910 45 H 0.072 0.928 46 H 0.080 0.920 47 H 0.071 0.929 48 H 0.172 0.828 49 H 0.063 0.937 50 H 0.103 0.897 51 H 0.225 0.775 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -14.381 6.298 12.008 19.766 hybrid contribution 0.666 -1.093 -1.675 2.108 sum -13.714 5.204 10.333 17.943 Atomic orbital electron populations 1.21788 0.95276 1.01872 1.02046 1.22224 0.96915 0.97207 1.02830 1.21927 0.89153 0.95232 0.97591 0.89779 1.21379 0.97390 0.82898 0.97465 1.45791 1.53004 1.15789 1.21302 1.20281 0.80336 0.86735 0.82054 1.90661 1.40141 1.74963 1.36898 1.22712 0.97605 0.94792 1.01452 0.87206 1.23177 0.92389 1.04768 0.98082 1.23540 0.93269 0.93196 0.92880 1.88848 1.20234 1.53337 1.66665 1.22826 0.87330 0.96017 0.91087 0.88914 1.21705 0.99326 0.96229 0.98581 1.21700 1.01310 1.00209 0.97362 1.60126 1.05831 1.52935 1.10502 1.21728 0.96109 1.00876 0.89597 1.19786 0.88484 0.84732 0.84467 1.90531 1.65219 1.54886 1.35900 1.41880 1.08086 1.63611 1.06478 1.19736 0.82172 1.46755 0.94167 0.87882 1.25263 1.00558 0.97302 0.94819 1.69609 1.36280 1.50206 0.98172 0.85811 0.82241 0.77791 0.78581 1.19204 1.20757 1.20719 0.92607 0.92683 0.92274 0.91297 0.91336 0.91598 0.91208 0.75336 0.88754 0.89316 0.92067 0.88603 0.91245 0.90961 0.92751 0.92014 0.92883 0.82794 0.93703 0.89688 0.77521 0.91891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.75 37.15 0.36 -0.84 16 2 C -0.15 -1.39 5.38 -26.73 -0.14 -1.54 16 3 C 0.07 0.74 2.21 -67.72 -0.15 0.59 16 4 H 0.08 0.82 7.70 -51.93 -0.40 0.42 16 5 C 0.13 1.46 5.02 -4.05 -0.02 1.44 16 6 N -0.71 -8.15 5.24 -60.30 -0.32 -8.46 16 7 C 0.52 6.61 7.06 -10.99 -0.08 6.53 16 8 O -0.55 -8.65 15.25 5.56 0.08 -8.56 16 9 C -0.14 -1.54 3.06 -90.24 -0.28 -1.82 16 10 H 0.11 0.97 7.70 -51.93 -0.40 0.57 16 11 C -0.15 -1.56 6.70 -24.72 -0.17 -1.73 16 12 C 0.05 0.53 7.72 38.21 0.29 0.83 16 13 O -0.37 -4.67 10.84 -35.23 -0.38 -5.05 16 14 C 0.09 0.98 3.02 -26.15 -0.08 0.90 16 15 H 0.09 1.25 6.44 -51.93 -0.33 0.92 16 16 C -0.12 -1.14 5.42 -26.73 -0.14 -1.29 16 17 C -0.15 -1.33 9.83 37.16 0.37 -0.97 16 18 N -0.66 -8.98 5.23 -107.99 -0.56 -9.54 16 19 C 0.05 0.76 5.99 -4.97 -0.03 0.73 16 20 C 0.44 9.60 7.83 -10.99 -0.09 9.52 16 21 O -0.58 -14.77 15.90 5.55 0.09 -14.69 16 22 N -0.56 -13.55 5.29 -10.96 -0.06 -13.60 16 23 C -0.30 -8.03 9.68 -14.93 -0.14 -8.18 16 24 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -23.85 13.05 55.50 0.72 -23.12 16 27 Si 0.93 20.52 29.55 -169.99 -5.02 15.50 16 28 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 29 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 30 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 33 H 0.06 0.46 6.55 -51.92 -0.34 0.12 16 34 H 0.07 0.67 7.50 -51.92 -0.39 0.28 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 37 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 38 H 0.41 4.62 8.14 -40.82 -0.33 4.29 16 39 H 0.09 1.11 7.75 -51.93 -0.40 0.71 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.06 0.60 7.91 -51.93 -0.41 0.19 16 47 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.35 5.14 8.37 -39.29 -0.33 4.81 16 49 H 0.04 0.63 7.54 -51.93 -0.39 0.24 16 50 H 0.08 1.18 7.92 -51.93 -0.41 0.77 16 51 H 0.39 9.02 7.90 -40.82 -0.32 8.69 16 52 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 LS Contribution 419.03 15.07 6.31 6.31 Total: -1.00 -31.41 419.03 -8.50 -39.90 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: -8.97 Total: 16.64 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.39 Total: 4.67 kcal Atomic # 7 Polarization: -54.51 SS G_CDS: -0.21 Total: -54.73 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.21 Total: -28.30 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -31.41 -8.50 -39.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481835291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.155 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.560 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds