Wall clock time and date at job start Wed Apr 1 2020 00:30:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.47456 * 2 1 4 4 H 1.09001 * 109.46707 * 305.60971 * 3 2 1 5 5 C 1.52993 * 109.46868 * 65.61139 * 3 2 1 6 6 N 1.46497 * 109.46869 * 175.00020 * 5 3 2 7 7 C 1.34778 * 120.00077 * 180.02562 * 6 5 3 8 8 O 1.21281 * 120.00016 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00088 * 180.02562 * 7 6 5 10 10 H 1.09004 * 110.43701 * 57.45527 * 9 7 6 11 11 C 1.54811 * 110.60063 * 294.83193 * 9 7 6 12 12 C 1.54996 * 102.09208 * 262.14757 * 11 9 7 13 13 O 1.44376 * 103.49431 * 322.97683 * 12 11 9 14 14 C 1.43742 * 106.97483 * 40.05663 * 13 12 11 15 15 H 1.09004 * 110.00268 * 92.97890 * 14 13 12 16 16 C 1.53001 * 109.88393 * 214.06608 * 14 13 12 17 17 C 1.53002 * 109.46601 * 292.83362 * 16 14 13 18 18 N 1.46897 * 109.47217 * 185.61575 * 3 2 1 19 19 C 1.46903 * 111.00298 * 85.96628 * 18 3 2 20 20 C 1.50700 * 109.46958 * 174.53400 * 19 18 3 21 21 O 1.21289 * 120.00133 * 0.02562 * 20 19 18 22 22 N 1.34774 * 119.99640 * 180.02562 * 20 19 18 23 23 C 1.37093 * 120.00121 * 179.97438 * 22 20 19 24 24 H 1.08001 * 120.00171 * 0.02562 * 23 22 20 25 25 C 1.38955 * 120.00315 * 180.02562 * 23 22 20 26 26 N 1.31405 * 120.00096 * 0.02562 * 25 23 22 27 27 Si 1.86796 * 120.00013 * 180.02562 * 25 23 22 28 28 H 1.48506 * 109.47568 * 359.97438 * 27 25 23 29 29 H 1.48500 * 109.47486 * 119.99736 * 27 25 23 30 30 H 1.48497 * 109.47232 * 239.99980 * 27 25 23 31 31 H 1.09006 * 109.47262 * 63.34078 * 1 2 3 32 32 H 1.08997 * 109.47281 * 183.34228 * 1 2 3 33 33 H 1.09009 * 109.47023 * 303.34331 * 1 2 3 34 34 H 1.09010 * 109.46998 * 240.00136 * 2 1 3 35 35 H 1.09000 * 109.47333 * 120.00342 * 2 1 3 36 36 H 1.09004 * 109.47085 * 55.00348 * 5 3 2 37 37 H 1.09001 * 109.47487 * 295.00178 * 5 3 2 38 38 H 0.96997 * 120.00392 * 0.02562 * 6 5 3 39 39 H 1.08999 * 110.90722 * 20.34984 * 11 9 7 40 40 H 1.09001 * 110.90799 * 143.91757 * 11 9 7 41 41 H 1.08996 * 110.61599 * 81.47914 * 12 11 9 42 42 H 1.09003 * 110.61378 * 204.31786 * 12 11 9 43 43 H 1.08999 * 109.47075 * 52.83188 * 16 14 13 44 44 H 1.08998 * 109.47107 * 172.83564 * 16 14 13 45 45 H 1.08999 * 109.47264 * 299.99710 * 17 16 14 46 46 H 1.08995 * 109.47473 * 59.99825 * 17 16 14 47 47 H 1.09003 * 109.46761 * 180.02562 * 17 16 14 48 48 H 1.00912 * 110.99781 * 322.01345 * 18 3 2 49 49 H 1.09000 * 109.46760 * 294.53396 * 19 18 3 50 50 H 1.08998 * 109.46713 * 54.53660 * 19 18 3 51 51 H 0.97005 * 120.00262 * 0.02562 * 22 20 19 52 52 H 0.96995 * 120.00517 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5970 1.9845 -0.8355 5 6 1.6485 2.1218 1.3137 6 7 2.2379 3.4620 1.3650 7 6 2.0266 4.2505 2.4375 8 8 1.3482 3.8508 3.3598 9 6 2.6325 5.6294 2.4900 10 1 2.3090 6.2202 1.6330 11 6 4.1776 5.5440 2.5371 12 6 4.4651 5.6966 4.0524 13 8 3.4774 6.6553 4.4880 14 6 2.2530 6.3356 3.8061 15 1 1.6461 5.6713 4.4214 16 6 1.4760 7.6182 3.5029 17 6 0.9967 8.2458 4.8134 18 7 3.5027 1.4447 -0.1355 19 6 3.9007 1.3936 -1.5487 20 6 5.3975 1.5325 -1.6544 21 8 6.0670 1.6609 -0.6512 22 7 5.9922 1.5141 -2.8637 23 6 7.3539 1.6410 -2.9600 24 1 7.9501 1.7553 -2.0667 25 6 7.9670 1.6225 -4.2068 26 7 7.2416 1.4840 -5.2937 27 14 9.8224 1.7947 -4.3379 28 1 10.4037 1.9369 -2.9787 29 1 10.3864 0.5879 -4.9941 30 1 10.1522 2.9968 -5.1449 31 1 -0.3634 0.4611 -0.9185 32 1 -0.3634 -1.0259 0.0599 33 1 -0.3633 0.5649 0.8586 34 1 1.8933 -0.5139 -0.8901 35 1 1.8933 -0.5139 0.8899 36 1 2.0167 1.5306 2.1523 37 1 0.5629 2.1998 1.3731 38 1 2.7803 3.7819 0.6272 39 1 4.5251 4.5781 2.1705 40 1 4.6296 6.3584 1.9709 41 1 4.3294 4.7452 4.5666 42 1 5.4728 6.0792 4.2152 43 1 2.1245 8.3207 2.9794 44 1 0.6154 7.3823 2.8769 45 1 0.3482 7.5433 5.3369 46 1 1.8572 8.4817 5.4394 47 1 0.4427 9.1594 4.5974 48 1 3.9151 0.6841 0.3840 49 1 3.5929 0.4404 -1.9786 50 1 3.4210 2.2086 -2.0908 51 1 5.4567 1.4119 -3.6661 52 1 7.6695 1.4715 -6.1641 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481835291.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:30:22 Heat of formation + Delta-G solvation = -162.330962 kcal Electronic energy + Delta-G solvation = -30518.039915 eV Core-core repulsion = 26322.612546 eV Total energy + Delta-G solvation = -4195.427368 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.61098 -40.24556 -39.58562 -38.37338 -35.95652 -35.15713 -34.49912 -33.69291 -33.21767 -33.12640 -29.69565 -29.18491 -27.70308 -25.96559 -24.83507 -24.21810 -23.39193 -22.11233 -21.82337 -21.07731 -20.79591 -19.88509 -18.49303 -17.76888 -17.35639 -17.18078 -16.78387 -16.58504 -16.48512 -16.32850 -16.16561 -15.78380 -15.41397 -15.10630 -14.89913 -14.48904 -14.47972 -14.35064 -14.23044 -13.93889 -13.85294 -13.59066 -13.42843 -13.32976 -12.95919 -12.92168 -12.60029 -12.55807 -12.53351 -12.37442 -12.29416 -12.11380 -12.08665 -12.01387 -11.79537 -11.69354 -11.58416 -11.48174 -10.93038 -10.57078 -10.30878 -10.00641 -9.97915 -9.31804 -8.44902 -5.92574 1.37315 1.43233 1.56301 1.57157 2.10097 2.19403 2.30014 2.84475 2.89001 3.23250 3.47272 3.54206 3.65907 3.74600 3.80887 3.96341 4.01711 4.17949 4.21340 4.24617 4.28229 4.35235 4.38020 4.43769 4.51331 4.55308 4.57923 4.62405 4.74052 4.77086 4.83013 4.84265 4.87253 4.92432 4.99904 5.03174 5.08282 5.15063 5.21716 5.26113 5.37129 5.41561 5.43695 5.52401 5.88785 5.89935 6.10897 6.35106 6.57553 6.63336 7.16276 7.22501 7.60992 8.16399 8.72597 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.009737 B = 0.002628 C = 0.002169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2874.816502 B =10653.164089 C =12905.319889 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.082 3.918 4 H 0.099 0.901 5 C 0.135 3.865 6 N -0.702 5.702 7 C 0.518 3.482 8 O -0.583 6.583 9 C -0.138 4.138 10 H 0.135 0.865 11 C -0.140 4.140 12 C 0.043 3.957 13 O -0.384 6.384 14 C 0.083 3.917 15 H 0.068 0.932 16 C -0.118 4.118 17 C -0.148 4.148 18 N -0.671 5.671 19 C 0.066 3.934 20 C 0.440 3.560 21 O -0.620 6.620 22 N -0.576 5.576 23 C -0.328 4.328 24 H 0.078 0.922 25 C -0.013 4.013 26 N -0.921 5.921 27 Si 0.988 3.012 28 H -0.274 1.274 29 H -0.273 1.273 30 H -0.272 1.272 31 H 0.062 0.938 32 H 0.060 0.940 33 H 0.058 0.942 34 H 0.068 0.932 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.080 0.920 38 H 0.414 0.586 39 H 0.081 0.919 40 H 0.104 0.896 41 H 0.048 0.952 42 H 0.111 0.889 43 H 0.078 0.922 44 H 0.084 0.916 45 H 0.048 0.952 46 H 0.050 0.950 47 H 0.070 0.930 48 H 0.345 0.655 49 H 0.066 0.934 50 H 0.109 0.891 51 H 0.396 0.604 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.387 6.290 9.491 19.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.187 4.187 3 C -0.028 4.028 4 H 0.117 0.883 5 C 0.010 3.990 6 N -0.352 5.352 7 C 0.305 3.695 8 O -0.464 6.464 9 C -0.160 4.160 10 H 0.153 0.847 11 C -0.178 4.178 12 C -0.034 4.034 13 O -0.304 6.304 14 C 0.025 3.975 15 H 0.086 0.914 16 C -0.156 4.156 17 C -0.205 4.205 18 N -0.302 5.302 19 C -0.066 4.066 20 C 0.228 3.772 21 O -0.506 6.506 22 N -0.213 5.213 23 C -0.458 4.458 24 H 0.096 0.904 25 C -0.213 4.213 26 N -0.562 5.562 27 Si 0.813 3.187 28 H -0.198 1.198 29 H -0.199 1.199 30 H -0.197 1.197 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.083 0.917 36 H 0.069 0.931 37 H 0.098 0.902 38 H 0.250 0.750 39 H 0.100 0.900 40 H 0.122 0.878 41 H 0.066 0.934 42 H 0.130 0.870 43 H 0.096 0.904 44 H 0.103 0.897 45 H 0.067 0.933 46 H 0.069 0.931 47 H 0.089 0.911 48 H 0.164 0.836 49 H 0.084 0.916 50 H 0.127 0.873 51 H 0.230 0.770 52 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -15.277 6.925 10.775 19.936 hybrid contribution 0.898 -1.322 -1.215 2.008 sum -14.379 5.603 9.560 18.153 Atomic orbital electron populations 1.21762 0.94061 1.02391 1.02438 1.22166 0.97887 0.96049 1.02631 1.21909 0.87028 0.96218 0.97621 0.88271 1.21402 0.97831 0.82450 0.97271 1.45801 1.52547 1.15833 1.21003 1.20623 0.79830 0.87447 0.81648 1.90648 1.41847 1.75808 1.38118 1.22729 0.97396 0.93821 1.02014 0.84689 1.23139 0.92398 1.04606 0.97690 1.23627 0.93870 0.92632 0.93226 1.88838 1.20762 1.53511 1.67269 1.22828 0.86927 0.96812 0.90892 0.91410 1.21721 0.99594 0.95236 0.98999 1.21693 1.00951 1.00845 0.97023 1.60083 1.07938 1.52914 1.09303 1.21569 0.91052 1.02874 0.91126 1.20911 0.91137 0.82107 0.83078 1.90508 1.67096 1.55935 1.37066 1.41946 1.07339 1.64580 1.07453 1.19649 0.83692 1.48655 0.93772 0.90418 1.25967 1.04445 0.96613 0.94243 1.69662 1.37702 1.50337 0.98497 0.84933 0.77421 0.78209 0.78181 1.19845 1.19869 1.19713 0.91846 0.92129 0.92272 0.91372 0.91717 0.93130 0.90240 0.74969 0.90038 0.87765 0.93408 0.87047 0.90352 0.89717 0.93284 0.93121 0.91134 0.83596 0.91612 0.87270 0.77033 0.91423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.75 71.98 0.70 -1.30 16 2 C -0.15 -2.41 5.38 30.59 0.16 -2.24 16 3 C 0.08 1.52 2.21 44.92 0.10 1.62 16 4 H 0.10 1.61 7.70 -2.39 -0.02 1.59 16 5 C 0.13 2.79 5.02 86.38 0.43 3.23 16 6 N -0.70 -15.42 5.24 -463.07 -2.43 -17.85 16 7 C 0.52 12.93 7.06 87.66 0.62 13.55 16 8 O -0.58 -18.62 15.25 -3.03 -0.05 -18.67 16 9 C -0.14 -2.82 3.06 -10.55 -0.03 -2.85 16 10 H 0.14 2.06 7.70 -2.38 -0.02 2.04 16 11 C -0.14 -2.89 6.70 31.90 0.21 -2.67 16 12 C 0.04 0.96 7.72 72.66 0.56 1.52 16 13 O -0.38 -9.58 10.84 -148.98 -1.61 -11.20 16 14 C 0.08 1.89 3.02 30.97 0.09 1.98 16 15 H 0.07 1.89 6.44 -2.39 -0.02 1.87 16 16 C -0.12 -2.06 5.42 30.60 0.17 -1.89 16 17 C -0.15 -2.52 9.83 71.98 0.71 -1.82 16 18 N -0.67 -17.24 5.23 -495.58 -2.59 -19.82 16 19 C 0.07 1.90 5.99 85.56 0.51 2.41 16 20 C 0.44 19.07 7.83 87.66 0.69 19.76 16 21 O -0.62 -31.90 15.90 -3.06 -0.05 -31.95 16 22 N -0.58 -27.69 5.29 -306.99 -1.62 -29.32 16 23 C -0.33 -17.88 9.68 84.04 0.81 -17.06 16 24 H 0.08 4.56 7.16 -2.91 -0.02 4.54 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 26 N -0.92 -48.15 13.05 21.66 0.28 -47.87 16 27 Si 0.99 41.83 29.55 68.60 2.03 43.86 16 28 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 29 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 30 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 31 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.75 16 33 H 0.06 0.80 6.55 -2.38 -0.02 0.79 16 34 H 0.07 1.15 7.50 -2.38 -0.02 1.13 16 35 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.05 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.54 6.76 -2.39 -0.02 1.52 16 38 H 0.41 8.67 8.14 -92.71 -0.75 7.92 16 39 H 0.08 1.90 7.75 -2.39 -0.02 1.88 16 40 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.11 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 44 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 45 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 46 H 0.05 0.97 7.91 -2.39 -0.02 0.95 16 47 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 48 H 0.35 9.84 8.37 -89.68 -0.75 9.09 16 49 H 0.07 1.67 7.54 -2.39 -0.02 1.66 16 50 H 0.11 2.68 7.92 -2.39 -0.02 2.67 16 51 H 0.40 18.08 7.90 -92.70 -0.73 17.34 16 52 H 0.28 13.56 8.31 -92.71 -0.77 12.79 16 Total: -1.00 -68.63 419.03 -1.13 -69.76 By element: Atomic # 1 Polarization: 50.33 SS G_CDS: -1.30 Total: 49.03 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: 6.21 Total: 14.01 kcal Atomic # 7 Polarization: -108.50 SS G_CDS: -6.36 Total: -114.86 kcal Atomic # 8 Polarization: -60.10 SS G_CDS: -1.71 Total: -61.81 kcal Atomic # 14 Polarization: 41.83 SS G_CDS: 2.03 Total: 43.86 kcal Total: -68.63 -1.13 -69.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481835291.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.569 kcal (2) G-P(sol) polarization free energy of solvation -68.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds