Wall clock time and date at job start Wed Apr 1 2020 00:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.53001 * 109.47279 * 65.00040 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.50710 * 109.47272 * 175.00070 * 6 3 2 8 8 O 1.21279 * 119.99512 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99762 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99761 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47029 * 180.02562 * 10 9 7 12 12 O 1.42891 * 110.27446 * 62.91351 * 11 10 9 13 13 C 1.54591 * 110.30811 * 300.71427 * 11 10 9 14 14 C 1.54933 * 102.92140 * 219.12705 * 13 11 10 15 15 N 1.48530 * 103.22642 * 37.41876 * 14 13 11 16 16 C 1.46901 * 111.00078 * 200.27795 * 15 14 13 17 17 C 1.50706 * 109.47053 * 307.39699 * 16 15 14 18 18 O 1.21289 * 119.99833 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00113 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00257 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99914 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99913 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00375 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99616 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47014 * 120.00204 * 24 22 20 27 27 H 1.48497 * 109.46792 * 240.00038 * 24 22 20 28 28 C 1.47896 * 105.82115 * 320.79019 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.46924 * 300.00271 * 5 3 2 35 35 H 1.09000 * 109.47104 * 59.99686 * 5 3 2 36 36 H 1.08993 * 109.47832 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 38 38 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 39 39 H 0.96994 * 120.00701 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47247 * 300.00256 * 10 9 7 41 41 H 1.09002 * 109.46737 * 59.99879 * 10 9 7 42 42 H 0.96704 * 114.00410 * 300.69716 * 12 11 10 43 43 H 1.08992 * 110.72663 * 337.49044 * 13 11 10 44 44 H 1.09002 * 110.72193 * 100.77066 * 13 11 10 45 45 H 1.08997 * 110.66786 * 278.97876 * 14 13 11 46 46 H 1.09009 * 110.81045 * 155.92027 * 14 13 11 47 47 H 1.09002 * 109.47171 * 67.39313 * 16 15 14 48 48 H 1.08999 * 109.47260 * 187.39405 * 16 15 14 49 49 H 0.97006 * 119.99651 * 0.02562 * 19 17 16 50 50 H 0.96997 * 120.00252 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.92132 * 265.97907 * 28 15 14 52 52 H 1.09002 * 109.91902 * 144.68098 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8633 -0.2492 8 8 3.2661 3.7826 -0.2373 9 7 5.3761 3.1106 -0.3728 10 6 5.8546 4.4901 -0.4934 11 6 7.3793 4.4918 -0.6202 12 8 7.7777 3.8134 -1.8131 13 6 8.0215 3.8258 0.6183 14 6 9.2655 4.7109 0.8817 15 7 8.7819 6.0794 0.5660 16 6 9.9058 6.9845 0.2910 17 6 10.8947 6.9168 1.4263 18 8 10.6837 6.1868 2.3716 19 7 12.0134 7.6675 1.3911 20 6 12.9128 7.6063 2.4240 21 1 12.7250 6.9563 3.2657 22 6 14.0665 8.3799 2.3874 23 7 14.2953 9.1704 1.3630 24 14 15.2923 8.2959 3.7946 25 1 14.8055 7.3369 4.8186 26 1 16.6084 7.8421 3.2781 27 1 15.4375 9.6417 4.4054 28 6 7.9138 5.9360 -0.6227 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.5490 2.1252 1.3969 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 4.0030 0.9834 0.7597 38 1 3.8571 0.8799 -1.0113 39 1 6.0087 2.3754 -0.3826 40 1 5.4162 4.9506 -1.3787 41 1 5.5626 5.0546 0.3921 42 1 7.4873 2.8921 -1.8574 43 1 7.3403 3.8549 1.4686 44 1 8.3177 2.8008 0.3950 45 1 10.0846 4.4301 0.2197 46 1 9.5751 4.6433 1.9247 47 1 10.3954 6.6848 -0.6356 48 1 9.5350 8.0047 0.1925 49 1 12.1820 8.2516 0.6352 50 1 15.1005 9.7107 1.3377 51 1 8.4921 6.1163 -1.5289 52 1 7.0832 6.6394 -0.5630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001484218738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:45 Heat of formation + Delta-G solvation = -130.396848 kcal Electronic energy + Delta-G solvation = -29948.223546 eV Core-core repulsion = 25754.180945 eV Total energy + Delta-G solvation = -4194.042601 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.53190 -39.57482 -38.15262 -36.75541 -35.87689 -34.52081 -33.91310 -31.65644 -31.29386 -30.87647 -29.42192 -28.15507 -26.95461 -25.27656 -24.23341 -23.73292 -21.66708 -20.75368 -20.47665 -20.06783 -19.28664 -17.96801 -17.73288 -16.84760 -16.31640 -16.07332 -15.76982 -15.62163 -15.27245 -14.99870 -14.66391 -14.52262 -14.40108 -14.07680 -14.03575 -13.74255 -13.36036 -13.29236 -13.03636 -12.91346 -12.71432 -12.34180 -12.28131 -12.08364 -11.88263 -11.73223 -11.67059 -11.56439 -11.23147 -11.20621 -11.17772 -11.01280 -10.98031 -10.91868 -10.85090 -10.36679 -10.25417 -10.09615 -9.94823 -9.51995 -9.37210 -8.42209 -8.05650 -7.93939 -6.44307 -3.85281 2.38048 2.82302 3.14498 3.25417 3.32244 3.73633 3.86693 4.13319 4.24210 4.32147 4.36094 4.40246 4.49443 4.53068 4.68204 4.80407 4.88268 5.05230 5.07398 5.18147 5.22688 5.25872 5.30359 5.32979 5.38868 5.41127 5.54280 5.57096 5.61809 5.67934 5.69977 5.71132 5.71941 5.77215 5.85548 5.92375 5.94324 6.03717 6.08662 6.20204 6.23468 6.24206 6.59095 7.09272 7.14221 7.21769 7.37030 7.53037 7.94354 8.03289 8.58458 9.15136 9.50841 10.02121 10.73357 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029661 B = 0.001684 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.771591 B =16623.255652 C =16990.777949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.120 4.120 3 C -0.076 4.076 4 H 0.077 0.923 5 C -0.155 4.155 6 C -0.138 4.138 7 C 0.513 3.487 8 O -0.533 6.533 9 N -0.732 5.732 10 C 0.102 3.898 11 C 0.111 3.889 12 O -0.550 6.550 13 C -0.152 4.152 14 C 0.042 3.958 15 N -0.492 5.492 16 C 0.035 3.965 17 C 0.442 3.558 18 O -0.582 6.582 19 N -0.561 5.561 20 C -0.300 4.300 21 H 0.104 0.896 22 C 0.023 3.977 23 N -0.900 5.900 24 Si 0.930 3.070 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.281 1.281 28 C 0.048 3.952 29 H 0.054 0.946 30 H 0.058 0.942 31 H 0.052 0.948 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.054 0.946 35 H 0.047 0.953 36 H 0.074 0.926 37 H 0.094 0.906 38 H 0.092 0.908 39 H 0.397 0.603 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.371 0.629 43 H 0.083 0.917 44 H 0.073 0.927 45 H 0.039 0.961 46 H 0.121 0.879 47 H 0.051 0.949 48 H 0.092 0.908 49 H 0.393 0.607 50 H 0.271 0.729 51 H 0.062 0.938 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.125 -16.780 -7.296 27.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.158 4.158 3 C -0.095 4.095 4 H 0.096 0.904 5 C -0.212 4.212 6 C -0.178 4.178 7 C 0.300 3.700 8 O -0.410 6.410 9 N -0.385 5.385 10 C -0.022 4.022 11 C 0.070 3.930 12 O -0.355 6.355 13 C -0.190 4.190 14 C -0.085 4.085 15 N -0.217 5.217 16 C -0.096 4.096 17 C 0.228 3.772 18 O -0.467 6.467 19 N -0.197 5.197 20 C -0.429 4.429 21 H 0.122 0.878 22 C -0.179 4.179 23 N -0.541 5.541 24 Si 0.757 3.243 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.207 1.207 28 C -0.081 4.081 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.111 0.889 39 H 0.231 0.769 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.218 0.782 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.139 0.861 47 H 0.069 0.931 48 H 0.110 0.890 49 H 0.226 0.774 50 H 0.081 0.919 51 H 0.080 0.920 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.678 -15.629 -6.379 27.475 hybrid contribution 1.437 -0.750 -0.513 1.700 sum -20.241 -16.378 -6.892 26.934 Atomic orbital electron populations 1.21808 0.95687 1.01469 1.02146 1.21593 0.96259 0.96032 1.01898 1.20920 0.92557 0.96051 0.99988 0.90411 1.22002 1.01271 1.02165 0.95801 1.21792 0.98050 0.93756 1.04240 1.20729 0.81816 0.91823 0.75661 1.90691 1.54496 1.46711 1.49070 1.46015 1.07826 1.09037 1.75624 1.22080 0.93499 0.83250 1.03356 1.22333 0.91418 0.94152 0.85129 1.86648 1.79962 1.28344 1.40584 1.23295 0.99094 0.99059 0.97585 1.23437 0.94100 0.86146 1.04864 1.64723 1.17060 1.09387 1.30480 1.22126 0.91787 0.98509 0.97193 1.19672 0.83618 0.85034 0.88890 1.90428 1.77057 1.42754 1.36444 1.41852 1.18035 1.38395 1.21381 1.19755 0.99052 1.23899 1.00228 0.87804 1.25271 0.98366 0.96050 0.98199 1.69616 1.27853 1.26650 1.30005 0.85797 0.79725 0.78161 0.80636 1.19214 1.20775 1.20711 1.22838 0.98472 0.92880 0.93924 0.92735 0.92338 0.92878 0.91922 0.92059 0.92680 0.93352 0.90714 0.88803 0.88940 0.76928 0.90635 0.89764 0.78225 0.89824 0.90856 0.94241 0.86142 0.93088 0.89024 0.77412 0.91872 0.92008 0.89127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.67 37.16 0.36 -0.48 16 2 C -0.12 -0.65 5.40 -26.74 -0.14 -0.79 16 3 C -0.08 -0.53 2.04 -90.62 -0.18 -0.72 16 4 H 0.08 0.66 7.96 -51.93 -0.41 0.25 16 5 C -0.16 -1.27 8.69 37.16 0.32 -0.94 16 6 C -0.14 -0.83 5.17 -27.88 -0.14 -0.97 16 7 C 0.51 4.71 7.55 -10.98 -0.08 4.63 16 8 O -0.53 -7.02 13.96 5.56 0.08 -6.94 16 9 N -0.73 -5.65 5.11 -60.29 -0.31 -5.96 16 10 C 0.10 1.02 4.50 -4.04 -0.02 1.00 16 11 C 0.11 1.20 1.05 -89.26 -0.09 1.11 16 12 O -0.55 -5.69 12.95 -35.23 -0.46 -6.14 16 13 C -0.15 -1.75 5.64 -24.87 -0.14 -1.89 16 14 C 0.04 0.68 5.31 -1.90 -0.01 0.67 16 15 N -0.49 -8.17 5.26 -231.89 -1.22 -9.39 16 16 C 0.04 0.64 5.52 -4.97 -0.03 0.61 16 17 C 0.44 10.31 7.49 -10.98 -0.08 10.23 16 18 O -0.58 -15.15 13.09 5.55 0.07 -15.08 16 19 N -0.56 -14.11 5.29 -10.96 -0.06 -14.16 16 20 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 24 Si 0.93 20.88 29.55 -169.99 -5.02 15.86 16 25 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 C 0.05 0.63 6.18 -2.76 -0.02 0.61 16 29 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 31 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.05 0.42 6.56 -51.93 -0.34 0.08 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.07 0.80 5.95 -51.93 -0.31 0.49 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 39 H 0.40 1.98 7.33 -40.82 -0.30 1.68 16 40 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.37 2.32 8.14 45.56 0.37 2.69 16 43 H 0.08 0.97 7.86 -51.93 -0.41 0.56 16 44 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.04 0.68 8.02 -51.93 -0.42 0.26 16 46 H 0.12 2.36 5.96 -51.92 -0.31 2.05 16 47 H 0.05 0.86 7.81 -51.93 -0.41 0.46 16 48 H 0.09 1.51 8.14 -51.93 -0.42 1.09 16 49 H 0.39 9.50 7.90 -40.82 -0.32 9.18 16 50 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 51 H 0.06 0.84 7.39 -51.93 -0.38 0.45 16 52 H 0.09 1.09 7.68 -51.93 -0.40 0.69 16 LS Contribution 409.06 15.07 6.16 6.16 Total: -1.00 -33.03 409.06 -8.67 -41.70 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -8.13 Total: 12.43 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -0.50 Total: 5.16 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: -0.86 Total: -53.15 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.31 Total: -28.17 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.02 Total: 15.86 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -33.03 -8.67 -41.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484218738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.697 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds