Wall clock time and date at job start Wed Apr 1 2020 00:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09001 * 109.47563 * 305.00337 * 3 2 1 5 5 C 1.53001 * 109.47279 * 65.00040 * 3 2 1 6 6 C 1.52997 * 109.47448 * 184.99813 * 3 2 1 7 7 C 1.50710 * 109.47272 * 175.00070 * 6 3 2 8 8 O 1.21279 * 119.99512 * 0.02562 * 7 6 3 9 9 N 1.34772 * 119.99762 * 180.02562 * 7 6 3 10 10 C 1.46506 * 119.99761 * 179.97438 * 9 7 6 11 11 C 1.53002 * 109.47029 * 180.02562 * 10 9 7 12 12 O 1.42891 * 110.27446 * 62.91351 * 11 10 9 13 13 C 1.54591 * 110.30811 * 300.71427 * 11 10 9 14 14 C 1.54933 * 102.92140 * 219.12705 * 13 11 10 15 15 N 1.48530 * 103.22642 * 37.41876 * 14 13 11 16 16 C 1.46901 * 111.00078 * 200.27795 * 15 14 13 17 17 C 1.50706 * 109.47053 * 307.39699 * 16 15 14 18 18 O 1.21289 * 119.99833 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00113 * 179.97438 * 17 16 15 20 20 C 1.37096 * 120.00257 * 179.97438 * 19 17 16 21 21 H 1.07998 * 119.99914 * 0.02562 * 20 19 17 22 22 C 1.38953 * 119.99913 * 179.97438 * 20 19 17 23 23 N 1.31403 * 120.00375 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99616 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.47248 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.47014 * 120.00204 * 24 22 20 27 27 H 1.48497 * 109.46792 * 240.00038 * 24 22 20 28 28 C 1.47896 * 105.82115 * 320.79019 * 15 14 13 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 33 33 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 34 34 H 1.09001 * 109.46924 * 300.00271 * 5 3 2 35 35 H 1.09000 * 109.47104 * 59.99686 * 5 3 2 36 36 H 1.08993 * 109.47832 * 180.02562 * 5 3 2 37 37 H 1.09001 * 109.47310 * 295.00266 * 6 3 2 38 38 H 1.09002 * 109.47223 * 55.00225 * 6 3 2 39 39 H 0.96994 * 120.00701 * 0.02562 * 9 7 6 40 40 H 1.09001 * 109.47247 * 300.00256 * 10 9 7 41 41 H 1.09002 * 109.46737 * 59.99879 * 10 9 7 42 42 H 0.96704 * 114.00410 * 300.69716 * 12 11 10 43 43 H 1.08992 * 110.72663 * 337.49044 * 13 11 10 44 44 H 1.09002 * 110.72193 * 100.77066 * 13 11 10 45 45 H 1.08997 * 110.66786 * 278.97876 * 14 13 11 46 46 H 1.09009 * 110.81045 * 155.92027 * 14 13 11 47 47 H 1.09002 * 109.47171 * 67.39313 * 16 15 14 48 48 H 1.08999 * 109.47260 * 187.39405 * 16 15 14 49 49 H 0.97006 * 119.99651 * 0.02562 * 19 17 16 50 50 H 0.96997 * 120.00252 * 179.97438 * 23 22 20 51 51 H 1.09000 * 109.92132 * 265.97907 * 28 15 14 52 52 H 1.09002 * 109.91902 * 144.68098 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6353 2.1265 1.3073 6 6 3.5648 1.4442 -0.1257 7 6 4.0571 2.8633 -0.2492 8 8 3.2661 3.7826 -0.2373 9 7 5.3761 3.1106 -0.3728 10 6 5.8546 4.4901 -0.4934 11 6 7.3793 4.4918 -0.6202 12 8 7.7777 3.8134 -1.8131 13 6 8.0215 3.8258 0.6183 14 6 9.2655 4.7109 0.8817 15 7 8.7819 6.0794 0.5660 16 6 9.9058 6.9845 0.2910 17 6 10.8947 6.9168 1.4263 18 8 10.6837 6.1868 2.3716 19 7 12.0134 7.6675 1.3911 20 6 12.9128 7.6063 2.4240 21 1 12.7250 6.9563 3.2657 22 6 14.0665 8.3799 2.3874 23 7 14.2953 9.1704 1.3630 24 14 15.2923 8.2959 3.7946 25 1 14.8055 7.3369 4.8186 26 1 16.6084 7.8421 3.2781 27 1 15.4375 9.6417 4.4054 28 6 7.9138 5.9360 -0.6227 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5139 0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 0.5490 2.1252 1.3969 35 1 2.0699 1.5874 2.1492 36 1 1.9983 3.1542 1.3072 37 1 4.0030 0.9834 0.7597 38 1 3.8571 0.8799 -1.0113 39 1 6.0087 2.3754 -0.3826 40 1 5.4162 4.9506 -1.3787 41 1 5.5626 5.0546 0.3921 42 1 7.4873 2.8921 -1.8574 43 1 7.3403 3.8549 1.4686 44 1 8.3177 2.8008 0.3950 45 1 10.0846 4.4301 0.2197 46 1 9.5751 4.6433 1.9247 47 1 10.3954 6.6848 -0.6356 48 1 9.5350 8.0047 0.1925 49 1 12.1820 8.2516 0.6352 50 1 15.1005 9.7107 1.3377 51 1 8.4921 6.1163 -1.5289 52 1 7.0832 6.6394 -0.5630 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001484218738.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:32:44 Heat of formation + Delta-G solvation = -157.636436 kcal Electronic energy + Delta-G solvation = -29949.404744 eV Core-core repulsion = 25754.180945 eV Total energy + Delta-G solvation = -4195.223798 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.42757 -40.66094 -39.70575 -37.42780 -36.97882 -35.87294 -35.29724 -33.37048 -32.50471 -31.64057 -30.39605 -29.04331 -28.18317 -26.58954 -25.49642 -24.50403 -22.84218 -21.52000 -21.36135 -21.09284 -20.67634 -19.89602 -18.55190 -17.89978 -17.49167 -17.15439 -16.79431 -16.57233 -16.41985 -16.24899 -15.88747 -15.69965 -15.64612 -15.20771 -14.86552 -14.79460 -14.66567 -14.39159 -13.98876 -13.78384 -13.73229 -13.46834 -13.38318 -13.16489 -13.02091 -12.78955 -12.77672 -12.62559 -12.43090 -12.35435 -12.32716 -12.16451 -12.10818 -11.88364 -11.74391 -11.52239 -11.50726 -11.37443 -11.02677 -10.69368 -10.19021 -10.11623 -10.01981 -9.41112 -8.47845 -5.96671 1.35876 1.41516 1.55633 1.69630 2.01519 2.14366 2.27528 2.69520 3.17916 3.21042 3.27364 3.44793 3.60051 3.72367 3.81247 3.89416 4.02180 4.21174 4.26786 4.30400 4.31779 4.43396 4.48273 4.49662 4.60620 4.64897 4.66470 4.72055 4.73808 4.76247 4.79271 4.86146 4.93237 4.97847 5.06237 5.16591 5.19951 5.21907 5.25546 5.31954 5.39138 5.40581 5.55967 5.61222 5.79615 5.88488 6.05789 6.53015 6.58540 6.72912 7.11264 7.29471 7.53271 8.08605 8.69826 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.029661 B = 0.001684 C = 0.001648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.771591 B =16623.255652 C =16990.777949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.115 4.115 3 C -0.076 4.076 4 H 0.058 0.942 5 C -0.153 4.153 6 C -0.131 4.131 7 C 0.508 3.492 8 O -0.579 6.579 9 N -0.719 5.719 10 C 0.113 3.887 11 C 0.129 3.871 12 O -0.558 6.558 13 C -0.138 4.138 14 C 0.039 3.961 15 N -0.507 5.507 16 C 0.046 3.954 17 C 0.440 3.560 18 O -0.612 6.612 19 N -0.572 5.572 20 C -0.333 4.333 21 H 0.081 0.919 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.994 3.006 25 H -0.272 1.272 26 H -0.271 1.271 27 H -0.272 1.272 28 C 0.043 3.957 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.061 0.939 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.057 0.943 36 H 0.045 0.955 37 H 0.115 0.885 38 H 0.121 0.879 39 H 0.413 0.587 40 H 0.069 0.931 41 H 0.067 0.933 42 H 0.391 0.609 43 H 0.084 0.916 44 H 0.103 0.897 45 H 0.026 0.974 46 H 0.082 0.918 47 H 0.066 0.934 48 H 0.110 0.890 49 H 0.396 0.604 50 H 0.278 0.722 51 H 0.062 0.938 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.392 -18.668 -8.145 29.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.152 4.152 3 C -0.095 4.095 4 H 0.076 0.924 5 C -0.210 4.210 6 C -0.171 4.171 7 C 0.297 3.703 8 O -0.458 6.458 9 N -0.373 5.373 10 C -0.012 4.012 11 C 0.087 3.913 12 O -0.367 6.367 13 C -0.176 4.176 14 C -0.088 4.088 15 N -0.232 5.232 16 C -0.085 4.085 17 C 0.227 3.773 18 O -0.499 6.499 19 N -0.209 5.209 20 C -0.462 4.462 21 H 0.099 0.901 22 C -0.212 4.212 23 N -0.561 5.561 24 Si 0.818 3.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H -0.197 1.197 28 C -0.085 4.085 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.076 0.924 36 H 0.064 0.936 37 H 0.133 0.867 38 H 0.139 0.861 39 H 0.250 0.750 40 H 0.088 0.912 41 H 0.086 0.914 42 H 0.241 0.759 43 H 0.103 0.897 44 H 0.122 0.878 45 H 0.045 0.955 46 H 0.100 0.900 47 H 0.084 0.916 48 H 0.128 0.872 49 H 0.229 0.771 50 H 0.087 0.913 51 H 0.080 0.920 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -21.939 -17.552 -7.255 29.018 hybrid contribution 1.461 -0.180 -0.269 1.497 sum -20.477 -17.733 -7.524 28.114 Atomic orbital electron populations 1.21832 0.96063 1.01873 1.01621 1.21556 0.95931 0.94774 1.02940 1.20894 0.93483 0.96786 0.98329 0.92389 1.21961 1.01285 1.00711 0.97093 1.21833 0.97058 0.91716 1.06487 1.21368 0.81652 0.92768 0.74542 1.90686 1.55689 1.48342 1.51129 1.45868 1.07912 1.08630 1.74891 1.21798 0.92656 0.84392 1.02317 1.21981 0.91505 0.92746 0.85054 1.86617 1.80151 1.30032 1.39860 1.23226 0.96687 0.99719 0.98000 1.23268 0.96037 0.87367 1.02164 1.64690 1.16596 1.09311 1.32633 1.22011 0.91199 1.00172 0.95114 1.20619 0.83586 0.83399 0.89671 1.90427 1.77696 1.43587 1.38143 1.41921 1.18580 1.39188 1.21166 1.19717 1.00738 1.24957 1.00810 0.90112 1.26050 0.99434 0.95209 1.00537 1.69677 1.28506 1.26789 1.31156 0.84856 0.77527 0.78302 0.77554 1.19696 1.19611 1.19683 1.22921 0.98118 0.95098 0.92357 0.93277 0.92937 0.91974 0.91032 0.90747 0.92709 0.92423 0.93603 0.86733 0.86112 0.74950 0.91228 0.91430 0.75876 0.89742 0.87819 0.95541 0.89989 0.91569 0.87199 0.77070 0.91293 0.91972 0.87979 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.67 71.98 0.70 -0.80 16 2 C -0.11 -0.96 5.40 30.59 0.17 -0.79 16 3 C -0.08 -0.95 2.04 -10.80 -0.02 -0.98 16 4 H 0.06 0.96 7.96 -2.39 -0.02 0.94 16 5 C -0.15 -2.44 8.69 71.98 0.63 -1.82 16 6 C -0.13 -1.20 5.17 29.85 0.15 -1.04 16 7 C 0.51 8.51 7.55 87.66 0.66 9.18 16 8 O -0.58 -15.23 13.96 -3.03 -0.04 -15.27 16 9 N -0.72 -9.35 5.11 -463.04 -2.37 -11.72 16 10 C 0.11 2.08 4.50 86.38 0.39 2.46 16 11 C 0.13 2.51 1.05 -9.91 -0.01 2.50 16 12 O -0.56 -9.84 12.95 -148.98 -1.93 -11.77 16 13 C -0.14 -2.92 5.64 31.80 0.18 -2.74 16 14 C 0.04 1.28 5.31 86.65 0.46 1.74 16 15 N -0.51 -16.68 5.26 -887.57 -4.67 -21.35 16 16 C 0.05 1.67 5.52 85.56 0.47 2.14 16 17 C 0.44 21.04 7.49 87.66 0.66 21.69 16 18 O -0.61 -33.11 13.09 -3.06 -0.04 -33.15 16 19 N -0.57 -29.52 5.29 -306.99 -1.62 -31.14 16 20 C -0.33 -18.88 9.68 84.04 0.81 -18.07 16 21 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 22 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 23 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 24 Si 0.99 42.86 29.55 68.60 2.03 44.89 16 25 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 C 0.04 1.08 6.18 86.45 0.53 1.61 16 29 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.05 0.55 6.56 -2.39 -0.02 0.54 16 31 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 33 H 0.07 0.45 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.83 6.56 -2.39 -0.02 0.82 16 35 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.04 1.01 5.95 -2.39 -0.01 1.00 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.41 2.59 7.33 -92.71 -0.68 1.91 16 40 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 42 H 0.39 3.35 8.14 -74.05 -0.60 2.75 16 43 H 0.08 1.81 7.86 -2.39 -0.02 1.80 16 44 H 0.10 1.57 8.08 -2.39 -0.02 1.55 16 45 H 0.03 0.91 8.02 -2.39 -0.02 0.89 16 46 H 0.08 3.34 5.96 -2.38 -0.01 3.33 16 47 H 0.07 2.19 7.81 -2.39 -0.02 2.17 16 48 H 0.11 3.54 8.14 -2.39 -0.02 3.52 16 49 H 0.40 19.53 7.90 -92.70 -0.73 18.80 16 50 H 0.28 14.02 8.31 -92.71 -0.77 13.25 16 51 H 0.06 1.57 7.39 -2.39 -0.02 1.56 16 52 H 0.10 2.31 7.68 -2.39 -0.02 2.29 16 Total: -1.00 -74.58 409.06 -3.19 -77.76 By element: Atomic # 1 Polarization: 37.45 SS G_CDS: -1.07 Total: 36.38 kcal Atomic # 6 Polarization: 8.65 SS G_CDS: 6.24 Total: 14.89 kcal Atomic # 7 Polarization: -105.35 SS G_CDS: -8.38 Total: -113.73 kcal Atomic # 8 Polarization: -58.18 SS G_CDS: -2.01 Total: -60.19 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.58 -3.19 -77.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001484218738.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.872 kcal (2) G-P(sol) polarization free energy of solvation -74.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds