Wall clock time and date at job start Wed Apr 1 2020 00:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47407 * 2 1 4 4 H 1.09004 * 115.56709 * 29.30779 * 3 2 1 5 5 C 1.53000 * 117.50008 * 243.62046 * 3 2 1 6 6 C 1.52997 * 60.00347 * 252.51154 * 5 3 2 7 7 H 1.08997 * 117.50044 * 107.48590 * 6 5 3 8 8 C 1.50698 * 117.51636 * 252.52170 * 6 5 3 9 9 O 1.21279 * 120.00572 * 68.62479 * 8 6 5 10 10 N 1.34779 * 119.99924 * 248.62494 * 8 6 5 11 11 C 1.46504 * 119.99728 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00504 * 180.02562 * 10 8 6 13 13 C 1.53001 * 109.47348 * 89.99585 * 12 10 8 14 14 H 1.08998 * 109.47238 * 305.00543 * 13 12 10 15 15 O 1.42898 * 109.47133 * 65.00368 * 13 12 10 16 16 C 1.52995 * 109.47328 * 185.00234 * 13 12 10 17 17 N 1.46894 * 109.47407 * 180.02562 * 16 13 12 18 18 C 1.46900 * 111.00098 * 293.95685 * 17 16 13 19 19 C 1.46898 * 111.00477 * 170.00174 * 17 16 13 20 20 C 1.50699 * 109.47387 * 190.00148 * 19 17 16 21 21 O 1.21290 * 119.99839 * 0.02562 * 20 19 17 22 22 N 1.34775 * 120.00131 * 179.97438 * 20 19 17 23 23 C 1.37092 * 120.00532 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00538 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99814 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00213 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47280 * 90.00126 * 27 25 23 29 29 H 1.48503 * 109.47151 * 210.00128 * 27 25 23 30 30 H 1.48503 * 109.46846 * 329.99980 * 27 25 23 31 31 H 1.09004 * 109.46886 * 300.00550 * 1 2 3 32 32 H 1.09000 * 109.46731 * 60.00047 * 1 2 3 33 33 H 1.08990 * 109.47578 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46886 * 239.99450 * 2 1 3 35 35 H 1.09002 * 109.46769 * 120.00487 * 2 1 3 36 36 H 1.09002 * 117.49696 * 0.02562 * 5 3 2 37 37 H 1.09002 * 117.50343 * 145.02258 * 5 3 2 38 38 H 1.09000 * 109.47109 * 90.00118 * 11 10 8 39 39 H 1.09009 * 109.47012 * 210.00323 * 11 10 8 40 40 H 1.09004 * 109.47102 * 329.99622 * 11 10 8 41 41 H 1.08998 * 109.47116 * 210.00100 * 12 10 8 42 42 H 1.09004 * 109.46760 * 329.99683 * 12 10 8 43 43 H 0.96699 * 114.00006 * 59.99317 * 15 13 12 44 44 H 1.08998 * 109.47213 * 300.00324 * 16 13 12 45 45 H 1.09004 * 109.46768 * 60.00111 * 16 13 12 46 46 H 1.08997 * 109.47304 * 59.99538 * 18 17 16 47 47 H 1.09005 * 109.47117 * 179.97438 * 18 17 16 48 48 H 1.09001 * 109.46935 * 299.99486 * 18 17 16 49 49 H 1.09007 * 109.46718 * 310.00347 * 19 17 16 50 50 H 1.08999 * 109.46971 * 69.99969 * 19 17 16 51 51 H 0.97011 * 119.99719 * 0.02562 * 22 20 19 52 52 H 0.97000 * 120.00558 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7717 0.1961 8 6 4.0230 2.8615 0.8918 9 8 3.2161 3.6160 1.3922 10 7 5.3426 3.0997 1.0276 11 6 6.3174 2.1879 0.4236 12 6 5.8023 4.2696 1.7801 13 6 5.9794 3.8919 3.2521 14 1 5.0502 3.4679 3.6328 15 8 7.0277 2.9284 3.3739 16 6 6.3384 5.1409 4.0595 17 7 6.5090 4.7782 5.4727 18 6 5.2372 4.3360 6.0600 19 6 7.0821 5.8940 6.2372 20 6 7.4698 5.4143 7.6122 21 8 7.2871 4.2566 7.9244 22 7 8.0204 6.2714 8.4946 23 6 8.3735 5.8349 9.7453 24 1 8.2101 4.8043 10.0236 25 6 8.9417 6.7184 10.6548 26 7 9.1401 7.9725 10.3163 27 14 9.4222 6.1238 12.3592 28 1 10.8243 5.6353 12.3360 29 1 9.3045 7.2448 13.3260 30 1 8.5196 5.0185 12.7705 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0093 1.1858 -2.0159 37 1 2.7216 2.9426 -1.5344 38 1 6.5471 2.5203 -0.5887 39 1 7.2295 2.1839 1.0206 40 1 5.9009 1.1812 0.3899 41 1 6.7551 4.6106 1.3752 42 1 5.0651 5.0682 1.6960 43 1 7.8858 3.2383 3.0535 44 1 7.2676 5.5649 3.6789 45 1 5.5387 5.8758 3.9666 46 1 4.8699 3.4650 5.5175 47 1 5.3922 4.0732 7.1065 48 1 4.5061 5.1415 5.9918 49 1 7.9652 6.2719 5.7218 50 1 6.3440 6.6912 6.3252 51 1 8.1669 7.1972 8.2447 52 1 9.5364 8.5895 10.9513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001486349273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:13 Heat of formation + Delta-G solvation = -89.460541 kcal Electronic energy + Delta-G solvation = -29892.768231 eV Core-core repulsion = 25700.500761 eV Total energy + Delta-G solvation = -4192.267470 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.55971 -38.87868 -38.05109 -37.17030 -35.83685 -35.06257 -33.78215 -32.46482 -31.21875 -30.78527 -28.02360 -27.29461 -26.68447 -25.06889 -24.32798 -23.87982 -22.47491 -21.00400 -20.86270 -19.29459 -19.08457 -17.80088 -17.61426 -16.94603 -16.24803 -16.02247 -15.85534 -15.45955 -15.19429 -15.01126 -14.78115 -14.49483 -14.35865 -14.15547 -13.76719 -13.62321 -13.32674 -13.24665 -13.03592 -12.85879 -12.78170 -12.55697 -12.49920 -12.05296 -11.99903 -11.67713 -11.61650 -11.47277 -11.41197 -11.37051 -11.21691 -10.91038 -10.81325 -10.69099 -10.38932 -10.36787 -10.35580 -10.18360 -9.94981 -9.43834 -8.81776 -8.36167 -7.93194 -7.77130 -6.38247 -3.78728 2.21118 2.63663 3.20359 3.28577 3.34726 3.43474 3.93026 3.96258 4.06770 4.24627 4.35171 4.36299 4.46163 4.61036 4.75391 4.78428 4.85921 4.89440 4.97157 5.02534 5.05180 5.12884 5.18047 5.23954 5.26992 5.30845 5.37344 5.41461 5.46443 5.55856 5.59427 5.60843 5.71567 5.76025 5.76881 5.78812 5.95164 6.00581 6.01620 6.05464 6.21455 6.32900 6.64746 7.06311 7.32860 7.41375 7.58707 7.73847 7.92221 8.10560 8.66344 9.22251 9.58743 10.11307 10.79658 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.001749 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.118489 B =16001.080257 C =16501.357007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.118 4.118 4 H 0.118 0.882 5 C -0.148 4.148 6 C -0.192 4.192 7 H 0.125 0.875 8 C 0.543 3.457 9 O -0.540 6.540 10 N -0.604 5.604 11 C 0.081 3.919 12 C 0.084 3.916 13 C 0.099 3.901 14 H 0.101 0.899 15 O -0.539 6.539 16 C 0.024 3.976 17 N -0.506 5.506 18 C 0.022 3.978 19 C 0.045 3.955 20 C 0.445 3.555 21 O -0.574 6.574 22 N -0.566 5.566 23 C -0.297 4.297 24 H 0.103 0.897 25 C 0.021 3.979 26 N -0.903 5.903 27 Si 0.930 3.070 28 H -0.278 1.278 29 H -0.284 1.284 30 H -0.270 1.270 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.104 0.896 37 H 0.097 0.903 38 H 0.053 0.947 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.082 0.918 42 H 0.091 0.909 43 H 0.367 0.633 44 H 0.076 0.924 45 H 0.040 0.960 46 H 0.060 0.940 47 H 0.096 0.904 48 H 0.012 0.988 49 H 0.086 0.914 50 H 0.046 0.954 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.449 -9.579 -26.995 30.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.133 4.133 3 C -0.136 4.136 4 H 0.136 0.864 5 C -0.185 4.185 6 C -0.212 4.212 7 H 0.143 0.857 8 C 0.331 3.669 9 O -0.417 6.417 10 N -0.336 5.336 11 C -0.062 4.062 12 C -0.040 4.040 13 C 0.038 3.962 14 H 0.119 0.881 15 O -0.343 6.343 16 C -0.106 4.106 17 N -0.230 5.230 18 C -0.125 4.125 19 C -0.086 4.086 20 C 0.231 3.769 21 O -0.458 6.458 22 N -0.203 5.203 23 C -0.427 4.427 24 H 0.121 0.879 25 C -0.180 4.180 26 N -0.545 5.545 27 Si 0.757 3.243 28 H -0.204 1.204 29 H -0.210 1.210 30 H -0.195 1.195 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.122 0.878 37 H 0.116 0.884 38 H 0.072 0.928 39 H 0.098 0.902 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.110 0.890 43 H 0.213 0.787 44 H 0.094 0.906 45 H 0.058 0.942 46 H 0.079 0.921 47 H 0.114 0.886 48 H 0.031 0.969 49 H 0.104 0.896 50 H 0.064 0.936 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.062 -10.555 -26.118 29.913 hybrid contribution 0.499 1.530 0.425 1.665 sum -9.563 -9.025 -25.692 28.861 Atomic orbital electron populations 1.21740 0.95088 1.01717 1.02190 1.21159 0.96385 0.93521 1.02197 1.22500 0.91401 0.98854 1.00864 0.86417 1.23086 1.02105 1.03064 0.90261 1.22344 0.97778 0.99031 1.02091 0.85708 1.19702 0.81823 0.85616 0.79762 1.90701 1.53562 1.48603 1.48859 1.47593 1.05758 1.26870 1.53399 1.21855 0.93165 0.93435 0.97721 1.22216 1.01107 0.88399 0.92250 1.22308 0.92215 0.89614 0.92046 0.88104 1.86675 1.19769 1.40844 1.87027 1.22781 1.00929 0.96360 0.90511 1.61488 1.26963 1.34769 0.99740 1.22555 0.88250 0.98531 1.03200 1.21883 0.99632 0.92043 0.95049 1.19731 0.84227 0.86951 0.86040 1.90496 1.58469 1.18038 1.78793 1.41866 1.54443 1.11466 1.12545 1.19699 1.37052 0.97529 0.88409 0.87938 1.25247 0.97475 0.95071 1.00207 1.69610 1.44582 1.03514 1.36776 0.85861 0.78981 0.78158 0.81299 1.20431 1.20987 1.19455 0.92395 0.92566 0.92558 0.91677 0.91287 0.87812 0.88406 0.92803 0.90219 0.90977 0.89963 0.89028 0.78656 0.90571 0.94224 0.92140 0.88582 0.96916 0.89560 0.93629 0.77551 0.91948 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.87 37.16 0.37 -0.51 16 2 C -0.10 -0.59 6.21 -26.73 -0.17 -0.76 16 3 C -0.12 -0.93 5.25 -90.62 -0.48 -1.41 16 4 H 0.12 1.17 7.60 -51.93 -0.39 0.77 16 5 C -0.15 -0.97 9.88 -26.73 -0.26 -1.23 16 6 C -0.19 -1.56 5.01 -91.77 -0.46 -2.02 16 7 H 0.13 0.81 6.44 -51.93 -0.33 0.47 16 8 C 0.54 6.11 7.46 -10.99 -0.08 6.02 16 9 O -0.54 -8.08 15.84 5.56 0.09 -7.99 16 10 N -0.60 -5.65 2.84 -181.56 -0.52 -6.17 16 11 C 0.08 0.50 10.08 59.85 0.60 1.11 16 12 C 0.08 0.79 5.06 -4.04 -0.02 0.77 16 13 C 0.10 1.19 3.08 -26.73 -0.08 1.11 16 14 H 0.10 1.50 6.55 -51.93 -0.34 1.16 16 15 O -0.54 -6.76 12.02 -35.23 -0.42 -7.18 16 16 C 0.02 0.30 4.62 -3.83 -0.02 0.29 16 17 N -0.51 -8.82 4.37 -244.38 -1.07 -9.88 16 18 C 0.02 0.40 8.96 60.06 0.54 0.94 16 19 C 0.05 0.84 5.45 -4.98 -0.03 0.81 16 20 C 0.45 10.78 7.47 -10.99 -0.08 10.69 16 21 O -0.57 -15.91 13.91 5.55 0.08 -15.83 16 22 N -0.57 -14.61 5.29 -10.97 -0.06 -14.66 16 23 C -0.30 -8.42 9.68 -14.94 -0.14 -8.56 16 24 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 25 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 26 N -0.90 -24.83 13.05 55.50 0.72 -24.11 16 27 Si 0.93 21.35 29.55 -169.99 -5.02 16.33 16 28 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 29 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 30 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.33 7.88 -51.93 -0.41 -0.08 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.47 8.03 -51.93 -0.42 0.05 16 37 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 39 H 0.08 0.47 7.10 -51.92 -0.37 0.10 16 40 H 0.07 0.39 6.00 -51.93 -0.31 0.08 16 41 H 0.08 0.56 8.07 -51.93 -0.42 0.14 16 42 H 0.09 0.97 7.42 -51.93 -0.39 0.58 16 43 H 0.37 3.29 9.04 45.56 0.41 3.70 16 44 H 0.08 0.83 7.93 -51.93 -0.41 0.42 16 45 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 46 H 0.06 1.03 6.47 -51.93 -0.34 0.70 16 47 H 0.10 2.06 5.83 -51.93 -0.30 1.76 16 48 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 49 H 0.09 1.41 7.93 -51.93 -0.41 1.00 16 50 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 51 H 0.39 9.64 7.90 -40.82 -0.32 9.32 16 52 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 420.67 15.07 6.34 6.34 Total: -1.00 -35.21 420.67 -8.33 -43.55 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -8.07 Total: 11.89 kcal Atomic # 6 Polarization: 8.14 SS G_CDS: -0.41 Total: 7.73 kcal Atomic # 7 Polarization: -53.91 SS G_CDS: -0.92 Total: -54.83 kcal Atomic # 8 Polarization: -30.75 SS G_CDS: -0.26 Total: -31.01 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.21 -8.33 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486349273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.913 kcal (2) G-P(sol) polarization free energy of solvation -35.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds