Wall clock time and date at job start Wed Apr 1 2020 00:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52989 * 109.47407 * 2 1 4 4 H 1.09004 * 115.56709 * 29.30779 * 3 2 1 5 5 C 1.53000 * 117.50008 * 243.62046 * 3 2 1 6 6 C 1.52997 * 60.00347 * 252.51154 * 5 3 2 7 7 H 1.08997 * 117.50044 * 107.48590 * 6 5 3 8 8 C 1.50698 * 117.51636 * 252.52170 * 6 5 3 9 9 O 1.21279 * 120.00572 * 68.62479 * 8 6 5 10 10 N 1.34779 * 119.99924 * 248.62494 * 8 6 5 11 11 C 1.46504 * 119.99728 * 359.97438 * 10 8 6 12 12 C 1.46498 * 120.00504 * 180.02562 * 10 8 6 13 13 C 1.53001 * 109.47348 * 89.99585 * 12 10 8 14 14 H 1.08998 * 109.47238 * 305.00543 * 13 12 10 15 15 O 1.42898 * 109.47133 * 65.00368 * 13 12 10 16 16 C 1.52995 * 109.47328 * 185.00234 * 13 12 10 17 17 N 1.46894 * 109.47407 * 180.02562 * 16 13 12 18 18 C 1.46900 * 111.00098 * 293.95685 * 17 16 13 19 19 C 1.46898 * 111.00477 * 170.00174 * 17 16 13 20 20 C 1.50699 * 109.47387 * 190.00148 * 19 17 16 21 21 O 1.21290 * 119.99839 * 0.02562 * 20 19 17 22 22 N 1.34775 * 120.00131 * 179.97438 * 20 19 17 23 23 C 1.37092 * 120.00532 * 180.02562 * 22 20 19 24 24 H 1.07999 * 119.99635 * 359.97438 * 23 22 20 25 25 C 1.38949 * 120.00538 * 179.97438 * 23 22 20 26 26 N 1.31407 * 119.99814 * 0.02562 * 25 23 22 27 27 Si 1.86797 * 120.00213 * 179.97438 * 25 23 22 28 28 H 1.48497 * 109.47280 * 90.00126 * 27 25 23 29 29 H 1.48503 * 109.47151 * 210.00128 * 27 25 23 30 30 H 1.48503 * 109.46846 * 329.99980 * 27 25 23 31 31 H 1.09004 * 109.46886 * 300.00550 * 1 2 3 32 32 H 1.09000 * 109.46731 * 60.00047 * 1 2 3 33 33 H 1.08990 * 109.47578 * 179.97438 * 1 2 3 34 34 H 1.09004 * 109.46886 * 239.99450 * 2 1 3 35 35 H 1.09002 * 109.46769 * 120.00487 * 2 1 3 36 36 H 1.09002 * 117.49696 * 0.02562 * 5 3 2 37 37 H 1.09002 * 117.50343 * 145.02258 * 5 3 2 38 38 H 1.09000 * 109.47109 * 90.00118 * 11 10 8 39 39 H 1.09009 * 109.47012 * 210.00323 * 11 10 8 40 40 H 1.09004 * 109.47102 * 329.99622 * 11 10 8 41 41 H 1.08998 * 109.47116 * 210.00100 * 12 10 8 42 42 H 1.09004 * 109.46760 * 329.99683 * 12 10 8 43 43 H 0.96699 * 114.00006 * 59.99317 * 15 13 12 44 44 H 1.08998 * 109.47213 * 300.00324 * 16 13 12 45 45 H 1.09004 * 109.46768 * 60.00111 * 16 13 12 46 46 H 1.08997 * 109.47304 * 59.99538 * 18 17 16 47 47 H 1.09005 * 109.47117 * 179.97438 * 18 17 16 48 48 H 1.09001 * 109.46935 * 299.99486 * 18 17 16 49 49 H 1.09007 * 109.46718 * 310.00347 * 19 17 16 50 50 H 1.08999 * 109.46971 * 69.99969 * 19 17 16 51 51 H 0.97011 * 119.99719 * 0.02562 * 22 20 19 52 52 H 0.97000 * 120.00558 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.3885 2.1717 0.4813 5 6 2.8441 1.9074 -1.2158 6 6 3.5503 1.6577 0.1183 7 1 4.1804 0.7717 0.1961 8 6 4.0230 2.8615 0.8918 9 8 3.2161 3.6160 1.3922 10 7 5.3426 3.0997 1.0276 11 6 6.3174 2.1879 0.4236 12 6 5.8023 4.2696 1.7801 13 6 5.9794 3.8919 3.2521 14 1 5.0502 3.4679 3.6328 15 8 7.0277 2.9284 3.3739 16 6 6.3384 5.1409 4.0595 17 7 6.5090 4.7782 5.4727 18 6 5.2372 4.3360 6.0600 19 6 7.0821 5.8940 6.2372 20 6 7.4698 5.4143 7.6122 21 8 7.2871 4.2566 7.9244 22 7 8.0204 6.2714 8.4946 23 6 8.3735 5.8349 9.7453 24 1 8.2101 4.8043 10.0236 25 6 8.9417 6.7184 10.6548 26 7 9.1401 7.9725 10.3163 27 14 9.4222 6.1238 12.3592 28 1 10.8243 5.6353 12.3360 29 1 9.3045 7.2448 13.3260 30 1 8.5196 5.0185 12.7705 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0275 -0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8933 -0.5139 0.8900 36 1 3.0093 1.1858 -2.0159 37 1 2.7216 2.9426 -1.5344 38 1 6.5471 2.5203 -0.5887 39 1 7.2295 2.1839 1.0206 40 1 5.9009 1.1812 0.3899 41 1 6.7551 4.6106 1.3752 42 1 5.0651 5.0682 1.6960 43 1 7.8858 3.2383 3.0535 44 1 7.2676 5.5649 3.6789 45 1 5.5387 5.8758 3.9666 46 1 4.8699 3.4650 5.5175 47 1 5.3922 4.0732 7.1065 48 1 4.5061 5.1415 5.9918 49 1 7.9652 6.2719 5.7218 50 1 6.3440 6.6912 6.3252 51 1 8.1669 7.1972 8.2447 52 1 9.5364 8.5895 10.9513 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001486349273.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:25:12 Heat of formation + Delta-G solvation = -116.672608 kcal Electronic energy + Delta-G solvation = -29893.948235 eV Core-core repulsion = 25700.500761 eV Total energy + Delta-G solvation = -4193.447474 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.34265 -40.43594 -39.23994 -38.01937 -37.04668 -36.06150 -35.75416 -33.28084 -32.99036 -31.74175 -29.50524 -28.30806 -27.42140 -26.79790 -25.25249 -24.64513 -23.46541 -22.12751 -21.43117 -20.98198 -20.01651 -19.84392 -18.36082 -18.07782 -17.41410 -17.07179 -16.87173 -16.75259 -16.49671 -16.23819 -16.00764 -15.55965 -15.48471 -15.14516 -15.08444 -14.97858 -14.71192 -14.28805 -13.81703 -13.77035 -13.54323 -13.46450 -13.41100 -13.18031 -13.05214 -12.99595 -12.79729 -12.72350 -12.58115 -12.53770 -12.41364 -12.18313 -12.12626 -11.94181 -11.88791 -11.46191 -11.36851 -11.21621 -10.95818 -10.76367 -10.27762 -9.99567 -9.56495 -9.19406 -8.46219 -5.94686 1.37701 1.41073 1.42511 1.53899 1.94374 2.06154 2.28613 2.71182 2.84505 3.20398 3.37463 3.44628 3.60901 3.74899 3.76976 3.81761 4.00547 4.06865 4.10663 4.25696 4.28246 4.29040 4.36787 4.38954 4.47838 4.50434 4.52360 4.54686 4.62301 4.65514 4.71609 4.76141 4.79187 4.91162 4.92421 4.99431 5.07328 5.13109 5.14195 5.21313 5.27644 5.41237 5.46892 5.50339 5.86382 6.03811 6.16592 6.34241 6.61754 6.96999 7.12924 7.13890 7.57185 8.13956 8.71193 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.023325 B = 0.001749 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.118489 B =16001.080257 C =16501.357007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.090 4.090 3 C -0.131 4.131 4 H 0.088 0.912 5 C -0.127 4.127 6 C -0.197 4.197 7 H 0.146 0.854 8 C 0.530 3.470 9 O -0.590 6.590 10 N -0.603 5.603 11 C 0.075 3.925 12 C 0.089 3.911 13 C 0.110 3.890 14 H 0.065 0.935 15 O -0.557 6.557 16 C 0.026 3.974 17 N -0.524 5.524 18 C 0.032 3.968 19 C 0.058 3.942 20 C 0.441 3.559 21 O -0.615 6.615 22 N -0.574 5.574 23 C -0.333 4.333 24 H 0.077 0.923 25 C -0.013 4.013 26 N -0.920 5.920 27 Si 0.992 3.008 28 H -0.270 1.270 29 H -0.270 1.270 30 H -0.275 1.275 31 H 0.043 0.957 32 H 0.059 0.941 33 H 0.066 0.934 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.133 0.867 37 H 0.089 0.911 38 H 0.075 0.925 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.118 0.882 42 H 0.078 0.922 43 H 0.384 0.616 44 H 0.106 0.894 45 H 0.047 0.953 46 H 0.062 0.938 47 H 0.056 0.944 48 H 0.024 0.976 49 H 0.117 0.883 50 H 0.064 0.936 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.141 -9.714 -29.178 31.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.127 4.127 3 C -0.149 4.149 4 H 0.106 0.894 5 C -0.164 4.164 6 C -0.217 4.217 7 H 0.163 0.837 8 C 0.320 3.680 9 O -0.471 6.471 10 N -0.333 5.333 11 C -0.066 4.066 12 C -0.034 4.034 13 C 0.049 3.951 14 H 0.083 0.917 15 O -0.363 6.363 16 C -0.103 4.103 17 N -0.248 5.248 18 C -0.117 4.117 19 C -0.073 4.073 20 C 0.228 3.772 21 O -0.501 6.501 22 N -0.212 5.212 23 C -0.462 4.462 24 H 0.095 0.905 25 C -0.212 4.212 26 N -0.561 5.561 27 Si 0.816 3.184 28 H -0.195 1.195 29 H -0.195 1.195 30 H -0.200 1.200 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.085 0.915 34 H 0.104 0.896 35 H 0.081 0.919 36 H 0.152 0.848 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.104 0.896 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.097 0.903 43 H 0.233 0.767 44 H 0.125 0.875 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.075 0.925 48 H 0.043 0.957 49 H 0.135 0.865 50 H 0.081 0.919 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.714 -10.678 -28.344 31.517 hybrid contribution 0.093 1.555 1.064 1.886 sum -8.621 -9.124 -27.280 30.030 Atomic orbital electron populations 1.21747 0.95112 1.02227 1.01718 1.21147 0.96363 0.92335 1.02882 1.22479 0.91053 0.99339 1.02069 0.89357 1.23165 0.99855 1.03315 0.90046 1.22400 0.97979 0.98441 1.02895 0.83660 1.20322 0.82152 0.86001 0.79529 1.90671 1.54938 1.50461 1.51055 1.47749 1.05809 1.27112 1.52651 1.22090 0.92499 0.93322 0.98702 1.22150 1.02403 0.88195 0.90695 1.22074 0.90741 0.88792 0.93478 0.91729 1.86640 1.20853 1.41385 1.87435 1.22897 1.02776 0.97021 0.87564 1.61433 1.26542 1.34949 1.01854 1.22341 0.89227 0.99215 1.00875 1.21772 1.01357 0.92472 0.91744 1.20793 0.82434 0.86187 0.87782 1.90475 1.59598 1.19931 1.80074 1.41923 1.55069 1.11886 1.12330 1.19643 1.39319 0.96962 0.90308 0.90499 1.26014 0.96694 0.95109 1.03410 1.69666 1.44335 1.04085 1.38031 0.84937 0.78664 0.77831 0.76946 1.19535 1.19493 1.20005 0.93802 0.92177 0.91493 0.89612 0.91855 0.84850 0.89287 0.90640 0.89620 0.90133 0.86385 0.90335 0.76688 0.87550 0.93496 0.91881 0.92521 0.95722 0.86546 0.91855 0.77009 0.91322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.71 9.87 71.98 0.71 -1.00 16 2 C -0.09 -1.02 6.21 30.59 0.19 -0.83 16 3 C -0.13 -2.05 5.25 -10.80 -0.06 -2.10 16 4 H 0.09 1.91 7.60 -2.38 -0.02 1.89 16 5 C -0.13 -1.44 9.88 30.59 0.30 -1.14 16 6 C -0.20 -2.98 5.01 -11.54 -0.06 -3.04 16 7 H 0.15 1.55 6.44 -2.39 -0.02 1.54 16 8 C 0.53 11.87 7.46 87.66 0.65 12.52 16 9 O -0.59 -18.50 15.84 -3.03 -0.05 -18.55 16 10 N -0.60 -10.41 2.84 -846.73 -2.40 -12.81 16 11 C 0.08 0.72 10.08 127.77 1.29 2.01 16 12 C 0.09 1.53 5.06 86.38 0.44 1.97 16 13 C 0.11 2.53 3.08 30.59 0.09 2.63 16 14 H 0.06 1.97 6.55 -2.39 -0.02 1.96 16 15 O -0.56 -13.09 12.02 -148.98 -1.79 -14.88 16 16 C 0.03 0.61 4.62 86.30 0.40 1.01 16 17 N -0.52 -17.83 4.37 -927.07 -4.05 -21.88 16 18 C 0.03 1.17 8.96 127.69 1.14 2.31 16 19 C 0.06 2.05 5.45 85.56 0.47 2.51 16 20 C 0.44 21.63 7.47 87.66 0.66 22.29 16 21 O -0.61 -35.26 13.91 -3.06 -0.04 -35.31 16 22 N -0.57 -30.09 5.29 -306.99 -1.62 -31.72 16 23 C -0.33 -19.28 9.68 84.04 0.81 -18.47 16 24 H 0.08 4.77 7.16 -2.91 -0.02 4.75 16 25 C -0.01 -0.68 5.50 84.93 0.47 -0.22 16 26 N -0.92 -50.12 13.05 21.66 0.28 -49.84 16 27 Si 0.99 43.67 29.55 68.60 2.03 45.70 16 28 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 29 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 30 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 31 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.09 0.63 7.88 -2.39 -0.02 0.61 16 35 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.13 0.73 8.03 -2.39 -0.02 0.72 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.08 0.44 8.14 -2.39 -0.02 0.42 16 39 H 0.09 0.74 7.10 -2.38 -0.02 0.73 16 40 H 0.08 0.64 6.00 -2.38 -0.01 0.63 16 41 H 0.12 1.17 8.07 -2.39 -0.02 1.16 16 42 H 0.08 1.59 7.42 -2.38 -0.02 1.58 16 43 H 0.38 5.84 9.04 -74.06 -0.67 5.17 16 44 H 0.11 1.90 7.93 -2.39 -0.02 1.88 16 45 H 0.05 1.08 8.12 -2.38 -0.02 1.06 16 46 H 0.06 2.25 6.47 -2.39 -0.02 2.23 16 47 H 0.06 2.54 5.83 -2.38 -0.01 2.53 16 48 H 0.02 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.12 3.46 7.93 -2.38 -0.02 3.45 16 50 H 0.06 2.06 8.12 -2.39 -0.02 2.04 16 51 H 0.40 19.59 7.90 -92.70 -0.73 18.86 16 52 H 0.28 14.13 8.31 -92.71 -0.77 13.36 16 Total: -1.00 -80.00 420.67 -0.61 -80.60 By element: Atomic # 1 Polarization: 38.69 SS G_CDS: -0.47 Total: 38.22 kcal Atomic # 6 Polarization: 12.95 SS G_CDS: 7.51 Total: 20.46 kcal Atomic # 7 Polarization: -108.46 SS G_CDS: -7.79 Total: -116.25 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -1.88 Total: -68.74 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 2.03 Total: 45.70 kcal Total: -80.00 -0.61 -80.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001486349273.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.069 kcal (2) G-P(sol) polarization free energy of solvation -79.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds