Wall clock time and date at job start Wed Apr 1 2020 00:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47610 * 2 1 4 4 H 1.09001 * 110.72098 * 302.62668 * 3 2 1 5 5 C 1.54939 * 110.66951 * 179.53459 * 3 2 1 6 6 H 1.09002 * 110.72114 * 322.50895 * 5 3 2 7 7 N 1.46502 * 110.87748 * 85.72008 * 5 3 2 8 8 C 1.34770 * 120.00199 * 200.04802 * 7 5 3 9 9 O 1.21282 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00368 * 180.02562 * 8 7 5 11 11 O 1.42895 * 109.47296 * 179.97438 * 10 8 7 12 12 C 1.42901 * 114.00285 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47315 * 149.99691 * 12 11 10 14 14 C 1.53000 * 109.47130 * 270.00143 * 12 11 10 15 15 C 1.54596 * 102.91943 * 204.14981 * 5 3 2 16 16 C 1.53986 * 105.14012 * 21.95804 * 15 5 3 17 17 N 1.47900 * 107.06303 * 1.22120 * 16 15 5 18 18 C 1.46899 * 111.00414 * 214.15590 * 17 16 15 19 19 C 1.50691 * 109.47189 * 302.97109 * 18 17 16 20 20 O 1.21295 * 119.99952 * 354.33986 * 19 18 17 21 21 N 1.34777 * 120.00163 * 174.34275 * 19 18 17 22 22 C 1.37097 * 120.00059 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00309 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99983 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00098 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47001 * 90.00492 * 26 24 22 28 28 H 1.48503 * 109.47099 * 209.99870 * 26 24 22 29 29 H 1.48493 * 109.47216 * 329.99895 * 26 24 22 30 30 H 1.08999 * 109.46708 * 40.50234 * 1 2 3 31 31 H 1.08999 * 109.47719 * 160.50562 * 1 2 3 32 32 H 1.09003 * 109.47097 * 280.50521 * 1 2 3 33 33 H 1.09000 * 109.46994 * 239.99580 * 2 1 3 34 34 H 1.09002 * 109.47166 * 120.00492 * 2 1 3 35 35 H 0.96998 * 120.00017 * 20.04300 * 7 5 3 36 36 H 1.09000 * 109.46855 * 299.99561 * 10 8 7 37 37 H 1.09002 * 109.47402 * 59.99129 * 10 8 7 38 38 H 1.08999 * 109.46660 * 29.99739 * 12 11 10 39 39 H 1.08999 * 109.47218 * 60.00389 * 13 12 11 40 40 H 1.09002 * 109.46827 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47088 * 300.00011 * 13 12 11 42 42 H 1.08997 * 109.47239 * 59.99589 * 14 12 11 43 43 H 1.08994 * 109.47281 * 179.97438 * 14 12 11 44 44 H 1.09000 * 109.46551 * 299.99620 * 14 12 11 45 45 H 1.09001 * 110.30674 * 263.03821 * 15 5 3 46 46 H 1.09001 * 110.38595 * 140.91647 * 15 5 3 47 47 H 1.09007 * 109.91803 * 241.87271 * 16 15 5 48 48 H 1.09002 * 110.08265 * 120.66982 * 16 15 5 49 49 H 1.08997 * 109.46816 * 182.96966 * 18 17 16 50 50 H 1.08999 * 109.46549 * 62.97079 * 18 17 16 51 51 H 0.96998 * 119.99761 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00530 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6504 1.9893 -0.8586 5 6 3.5891 1.4747 0.0118 6 1 3.9867 0.6757 0.6375 7 7 4.1236 1.3798 -1.3489 8 6 5.3982 0.9888 -1.5465 9 8 6.1028 0.7161 -0.5978 10 6 5.9482 0.8917 -2.9462 11 8 7.3096 0.4604 -2.8941 12 6 7.9288 0.3345 -4.1758 13 6 9.4278 0.6130 -4.0476 14 6 7.7173 -1.0846 -4.7072 15 6 3.9013 2.8582 0.6269 16 6 2.6332 3.2457 1.4098 17 7 1.6762 2.1272 1.2668 18 6 0.2932 2.6202 1.2204 19 6 0.0047 3.4247 2.4615 20 8 0.8295 3.4878 3.3487 21 7 -1.1697 4.0741 2.5859 22 6 -1.4319 4.8064 3.7149 23 1 -0.6975 4.8626 4.5047 24 6 -2.6425 5.4763 3.8428 25 7 -3.5363 5.4075 2.8820 26 14 -3.0000 6.4735 5.3814 27 1 -2.5324 7.8694 5.1862 28 1 -4.4619 6.4733 5.6428 29 1 -2.2903 5.8708 6.5380 30 1 -0.3633 0.7814 -0.6675 31 1 -0.3634 -0.9687 -0.3429 32 1 -0.3633 0.1874 1.0105 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5602 1.5982 -2.1077 36 1 5.3609 0.1735 -3.5183 37 1 5.8951 1.8689 -3.4261 38 1 7.4839 1.0511 -4.8662 39 1 9.8727 -0.1035 -3.3572 40 1 9.9002 0.5165 -5.0252 41 1 9.5784 1.6240 -3.6691 42 1 6.6495 -1.2829 -4.7985 43 1 8.1893 -1.1805 -5.6850 44 1 8.1623 -1.8011 -4.0167 45 1 4.0975 3.5865 -0.1600 46 1 4.7557 2.7903 1.3003 47 1 2.2038 4.1571 0.9937 48 1 2.8743 3.3959 2.4622 49 1 -0.3924 1.7745 1.1681 50 1 0.1614 3.2498 0.3405 51 1 -1.8291 4.0239 1.8763 52 1 -4.3816 5.8748 2.9714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001489105746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:36 Heat of formation + Delta-G solvation = -114.112365 kcal Electronic energy + Delta-G solvation = -30292.793848 eV Core-core repulsion = 26099.457395 eV Total energy + Delta-G solvation = -4193.336453 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.40309 -39.33842 -38.30465 -37.52344 -34.58467 -33.91264 -33.25365 -33.14276 -31.39573 -30.92821 -28.48110 -27.70796 -27.47517 -26.08686 -24.27780 -22.71151 -21.76332 -21.46846 -20.73572 -20.02245 -19.08849 -17.87882 -17.44217 -17.43241 -16.54579 -16.31238 -15.79206 -15.49095 -15.22173 -14.88898 -14.63752 -14.34375 -14.13414 -13.97449 -13.86121 -13.45142 -13.27589 -13.07836 -12.96006 -12.91254 -12.89064 -12.60469 -12.40070 -12.29605 -12.21969 -11.87051 -11.58090 -11.46673 -11.28326 -11.19409 -11.14702 -11.06357 -10.86702 -10.54228 -10.40178 -10.32574 -10.22157 -10.08107 -9.94494 -9.49418 -9.20928 -8.40919 -8.02184 -7.93376 -6.42194 -3.82815 2.41127 2.48989 3.17477 3.26284 3.32432 3.56710 3.90648 4.06054 4.23097 4.35691 4.43317 4.54372 4.60670 4.65330 4.69987 4.73715 4.82805 5.03500 5.11532 5.16818 5.20740 5.23150 5.25747 5.27149 5.36021 5.38187 5.39485 5.41726 5.60611 5.68973 5.75125 5.76602 5.79519 5.80560 5.93812 5.99765 6.03523 6.18152 6.23400 6.27526 6.37391 6.38904 6.60939 6.71492 7.18434 7.21992 7.30160 7.54970 8.03074 8.05871 8.61360 9.17931 9.53861 10.05766 10.75555 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026362 B = 0.001871 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.868854 B =14963.008302 C =15494.308451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.106 4.106 3 C 0.058 3.942 4 H 0.055 0.945 5 C 0.149 3.851 6 H 0.104 0.896 7 N -0.721 5.721 8 C 0.514 3.486 9 O -0.514 6.514 10 C 0.044 3.956 11 O -0.357 6.357 12 C 0.079 3.921 13 C -0.150 4.150 14 C -0.176 4.176 15 C -0.143 4.143 16 C 0.048 3.952 17 N -0.482 5.482 18 C 0.025 3.975 19 C 0.442 3.558 20 O -0.578 6.578 21 N -0.564 5.564 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.930 3.070 27 H -0.279 1.279 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.399 0.601 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.077 0.923 47 H 0.041 0.959 48 H 0.101 0.899 49 H 0.105 0.895 50 H 0.045 0.955 51 H 0.391 0.609 52 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.189 -10.275 -20.064 27.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.144 4.144 3 C -0.051 4.051 4 H 0.073 0.927 5 C 0.044 3.956 6 H 0.122 0.878 7 N -0.375 5.375 8 C 0.298 3.702 9 O -0.388 6.388 10 C -0.036 4.036 11 O -0.275 6.275 12 C 0.021 3.979 13 C -0.207 4.207 14 C -0.234 4.234 15 C -0.182 4.182 16 C -0.080 4.080 17 N -0.207 5.207 18 C -0.106 4.106 19 C 0.227 3.773 20 O -0.462 6.462 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.093 0.907 35 H 0.233 0.767 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.096 0.904 47 H 0.059 0.941 48 H 0.119 0.881 49 H 0.123 0.877 50 H 0.063 0.937 51 H 0.224 0.776 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 16.211 -10.742 -18.138 26.593 hybrid contribution -1.371 1.359 -1.144 2.244 sum 14.840 -9.383 -19.282 26.078 Atomic orbital electron populations 1.22003 0.95685 1.01220 1.02567 1.21428 0.96165 0.94593 1.02213 1.23070 0.93061 0.96355 0.92643 0.92721 1.21890 0.92612 0.98850 0.82207 0.87791 1.45881 1.12618 1.69719 1.09261 1.20215 0.81898 0.77254 0.90792 1.90757 1.57619 1.47161 1.43224 1.22229 0.85577 1.00642 0.95132 1.88080 1.22950 1.88135 1.28357 1.22181 0.94469 0.96479 0.84766 1.21855 0.93502 1.02942 1.02425 1.22316 1.02209 0.97393 1.01475 1.22887 0.99359 0.96081 0.99881 1.22839 0.90473 0.92050 1.02599 1.64487 1.01685 1.24385 1.30101 1.22472 0.91400 0.99627 0.97110 1.19746 0.84010 0.84488 0.89058 1.90514 1.47113 1.65911 1.42613 1.41854 1.15032 1.43784 1.19458 1.19699 1.01608 1.24516 0.96946 0.87914 1.25250 0.95526 0.98317 0.98839 1.69609 1.08065 1.43759 1.32954 0.85863 0.77410 0.79678 0.81382 1.20470 1.20935 1.19400 0.92827 0.92938 0.91264 0.91987 0.90686 0.76727 0.90385 0.90337 0.92056 0.91536 0.91128 0.91827 0.92491 0.91497 0.91503 0.91577 0.90445 0.94087 0.88064 0.87734 0.93689 0.77555 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.71 8.35 37.16 0.31 -1.40 16 2 C -0.11 -1.16 5.69 -26.73 -0.15 -1.31 16 3 C 0.06 0.70 2.08 -65.79 -0.14 0.56 16 4 H 0.05 0.59 7.78 -51.93 -0.40 0.19 16 5 C 0.15 1.81 2.78 -66.07 -0.18 1.63 16 6 H 0.10 1.48 7.61 -51.93 -0.39 1.09 16 7 N -0.72 -6.73 5.15 -52.00 -0.27 -6.99 16 8 C 0.51 5.80 7.90 -10.99 -0.09 5.71 16 9 O -0.51 -8.39 16.22 -14.35 -0.23 -8.62 16 10 C 0.04 0.35 6.23 36.01 0.22 0.57 16 11 O -0.36 -3.71 9.52 -55.14 -0.52 -4.23 16 12 C 0.08 0.54 3.34 -26.73 -0.09 0.45 16 13 C -0.15 -0.94 9.56 37.16 0.36 -0.59 16 14 C -0.18 -1.02 9.53 37.16 0.35 -0.66 16 15 C -0.14 -1.94 6.67 -25.38 -0.17 -2.11 16 16 C 0.05 0.80 5.31 -2.76 -0.01 0.79 16 17 N -0.48 -7.81 4.84 -224.07 -1.08 -8.89 16 18 C 0.03 0.44 4.71 -4.98 -0.02 0.41 16 19 C 0.44 10.28 7.35 -10.99 -0.08 10.20 16 20 O -0.58 -15.39 13.94 5.54 0.08 -15.31 16 21 N -0.56 -14.15 5.29 -10.97 -0.06 -14.21 16 22 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.36 13.05 55.50 0.72 -23.64 16 26 Si 0.93 21.03 29.55 -169.99 -5.02 16.01 16 27 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 30 H 0.05 0.55 7.62 -51.93 -0.40 0.15 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.07 0.88 6.28 -51.93 -0.33 0.56 16 33 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.40 2.44 8.54 -40.82 -0.35 2.10 16 36 H 0.08 0.42 7.87 -51.93 -0.41 0.01 16 37 H 0.08 0.43 8.09 -51.93 -0.42 0.01 16 38 H 0.06 0.31 7.79 -51.93 -0.40 -0.09 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 41 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.31 7.87 -51.93 -0.41 -0.10 16 43 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.07 0.81 8.05 -51.93 -0.42 0.40 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 47 H 0.04 0.71 7.69 -51.93 -0.40 0.31 16 48 H 0.10 2.00 6.94 -51.93 -0.36 1.64 16 49 H 0.10 1.67 4.40 -51.93 -0.23 1.44 16 50 H 0.05 0.72 7.99 -51.93 -0.41 0.30 16 51 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 52 H 0.27 6.93 8.31 -40.82 -0.34 6.60 16 LS Contribution 414.71 15.07 6.25 6.25 Total: -1.00 -34.20 414.71 -9.04 -43.25 By element: Atomic # 1 Polarization: 19.01 SS G_CDS: -8.97 Total: 10.04 kcal Atomic # 6 Polarization: 6.29 SS G_CDS: 0.07 Total: 6.35 kcal Atomic # 7 Polarization: -53.05 SS G_CDS: -0.69 Total: -53.74 kcal Atomic # 8 Polarization: -27.48 SS G_CDS: -0.68 Total: -28.16 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -34.20 -9.04 -43.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489105746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.867 kcal (2) G-P(sol) polarization free energy of solvation -34.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds