Wall clock time and date at job start Wed Apr 1 2020 00:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47610 * 2 1 4 4 H 1.09001 * 110.72098 * 302.62668 * 3 2 1 5 5 C 1.54939 * 110.66951 * 179.53459 * 3 2 1 6 6 H 1.09002 * 110.72114 * 322.50895 * 5 3 2 7 7 N 1.46502 * 110.87748 * 85.72008 * 5 3 2 8 8 C 1.34770 * 120.00199 * 200.04802 * 7 5 3 9 9 O 1.21282 * 119.99983 * 359.97438 * 8 7 5 10 10 C 1.50701 * 120.00368 * 180.02562 * 8 7 5 11 11 O 1.42895 * 109.47296 * 179.97438 * 10 8 7 12 12 C 1.42901 * 114.00285 * 179.97438 * 11 10 8 13 13 C 1.52999 * 109.47315 * 149.99691 * 12 11 10 14 14 C 1.53000 * 109.47130 * 270.00143 * 12 11 10 15 15 C 1.54596 * 102.91943 * 204.14981 * 5 3 2 16 16 C 1.53986 * 105.14012 * 21.95804 * 15 5 3 17 17 N 1.47900 * 107.06303 * 1.22120 * 16 15 5 18 18 C 1.46899 * 111.00414 * 214.15590 * 17 16 15 19 19 C 1.50691 * 109.47189 * 302.97109 * 18 17 16 20 20 O 1.21295 * 119.99952 * 354.33986 * 19 18 17 21 21 N 1.34777 * 120.00163 * 174.34275 * 19 18 17 22 22 C 1.37097 * 120.00059 * 180.02562 * 21 19 18 23 23 H 1.07995 * 120.00309 * 359.97438 * 22 21 19 24 24 C 1.38951 * 119.99983 * 179.97438 * 22 21 19 25 25 N 1.31411 * 119.99848 * 0.02562 * 24 22 21 26 26 Si 1.86797 * 120.00098 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47001 * 90.00492 * 26 24 22 28 28 H 1.48503 * 109.47099 * 209.99870 * 26 24 22 29 29 H 1.48493 * 109.47216 * 329.99895 * 26 24 22 30 30 H 1.08999 * 109.46708 * 40.50234 * 1 2 3 31 31 H 1.08999 * 109.47719 * 160.50562 * 1 2 3 32 32 H 1.09003 * 109.47097 * 280.50521 * 1 2 3 33 33 H 1.09000 * 109.46994 * 239.99580 * 2 1 3 34 34 H 1.09002 * 109.47166 * 120.00492 * 2 1 3 35 35 H 0.96998 * 120.00017 * 20.04300 * 7 5 3 36 36 H 1.09000 * 109.46855 * 299.99561 * 10 8 7 37 37 H 1.09002 * 109.47402 * 59.99129 * 10 8 7 38 38 H 1.08999 * 109.46660 * 29.99739 * 12 11 10 39 39 H 1.08999 * 109.47218 * 60.00389 * 13 12 11 40 40 H 1.09002 * 109.46827 * 179.97438 * 13 12 11 41 41 H 1.08999 * 109.47088 * 300.00011 * 13 12 11 42 42 H 1.08997 * 109.47239 * 59.99589 * 14 12 11 43 43 H 1.08994 * 109.47281 * 179.97438 * 14 12 11 44 44 H 1.09000 * 109.46551 * 299.99620 * 14 12 11 45 45 H 1.09001 * 110.30674 * 263.03821 * 15 5 3 46 46 H 1.09001 * 110.38595 * 140.91647 * 15 5 3 47 47 H 1.09007 * 109.91803 * 241.87271 * 16 15 5 48 48 H 1.09002 * 110.08265 * 120.66982 * 16 15 5 49 49 H 1.08997 * 109.46816 * 182.96966 * 18 17 16 50 50 H 1.08999 * 109.46549 * 62.97079 * 18 17 16 51 51 H 0.96998 * 119.99761 * 359.97438 * 21 19 18 52 52 H 0.97001 * 120.00530 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6504 1.9893 -0.8586 5 6 3.5891 1.4747 0.0118 6 1 3.9867 0.6757 0.6375 7 7 4.1236 1.3798 -1.3489 8 6 5.3982 0.9888 -1.5465 9 8 6.1028 0.7161 -0.5978 10 6 5.9482 0.8917 -2.9462 11 8 7.3096 0.4604 -2.8941 12 6 7.9288 0.3345 -4.1758 13 6 9.4278 0.6130 -4.0476 14 6 7.7173 -1.0846 -4.7072 15 6 3.9013 2.8582 0.6269 16 6 2.6332 3.2457 1.4098 17 7 1.6762 2.1272 1.2668 18 6 0.2932 2.6202 1.2204 19 6 0.0047 3.4247 2.4615 20 8 0.8295 3.4878 3.3487 21 7 -1.1697 4.0741 2.5859 22 6 -1.4319 4.8064 3.7149 23 1 -0.6975 4.8626 4.5047 24 6 -2.6425 5.4763 3.8428 25 7 -3.5363 5.4075 2.8820 26 14 -3.0000 6.4735 5.3814 27 1 -2.5324 7.8694 5.1862 28 1 -4.4619 6.4733 5.6428 29 1 -2.2903 5.8708 6.5380 30 1 -0.3633 0.7814 -0.6675 31 1 -0.3634 -0.9687 -0.3429 32 1 -0.3633 0.1874 1.0105 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 3.5602 1.5982 -2.1077 36 1 5.3609 0.1735 -3.5183 37 1 5.8951 1.8689 -3.4261 38 1 7.4839 1.0511 -4.8662 39 1 9.8727 -0.1035 -3.3572 40 1 9.9002 0.5165 -5.0252 41 1 9.5784 1.6240 -3.6691 42 1 6.6495 -1.2829 -4.7985 43 1 8.1893 -1.1805 -5.6850 44 1 8.1623 -1.8011 -4.0167 45 1 4.0975 3.5865 -0.1600 46 1 4.7557 2.7903 1.3003 47 1 2.2038 4.1571 0.9937 48 1 2.8743 3.3959 2.4622 49 1 -0.3924 1.7745 1.1681 50 1 0.1614 3.2498 0.3405 51 1 -1.8291 4.0239 1.8763 52 1 -4.3816 5.8748 2.9714 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001489105746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:29:35 Heat of formation + Delta-G solvation = -140.059783 kcal Electronic energy + Delta-G solvation = -30293.919013 eV Core-core repulsion = 26099.457395 eV Total energy + Delta-G solvation = -4194.461618 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.44660 -40.50897 -39.43696 -38.74585 -36.05211 -35.47487 -34.27022 -33.71075 -33.29377 -32.24720 -29.34724 -28.73955 -28.08607 -27.44643 -25.93802 -23.84441 -22.51398 -22.22374 -21.74949 -21.21960 -20.74908 -19.83795 -18.30740 -18.17530 -17.59592 -17.42624 -17.00855 -16.63929 -16.47684 -16.18816 -15.74142 -15.67476 -15.48420 -15.36397 -14.80553 -14.57430 -14.41431 -13.99223 -13.96422 -13.87840 -13.81443 -13.55789 -13.47164 -13.46049 -13.04918 -12.97970 -12.87555 -12.65218 -12.49080 -12.40598 -12.33999 -12.25117 -12.12997 -11.83219 -11.64413 -11.61589 -11.54668 -11.39918 -10.87686 -10.62022 -10.27016 -10.09679 -10.00089 -9.34208 -8.46602 -5.94763 1.37085 1.41151 1.53528 1.56895 1.73346 2.05731 2.28789 2.77330 3.07725 3.20153 3.27327 3.39270 3.74304 3.76972 3.99374 4.03624 4.09755 4.12204 4.20196 4.23395 4.28609 4.31172 4.34076 4.36670 4.43328 4.44500 4.56039 4.64117 4.72242 4.77023 4.83852 4.88294 4.93458 4.95962 4.98058 5.05198 5.15508 5.20195 5.30852 5.33452 5.35263 5.40899 5.41662 5.48936 5.84123 5.96696 6.10949 6.18904 6.56519 6.61315 7.13617 7.24269 7.56625 8.13121 8.70729 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.026362 B = 0.001871 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1061.868854 B =14963.008302 C =15494.308451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.103 4.103 3 C 0.066 3.934 4 H 0.083 0.917 5 C 0.159 3.841 6 H 0.080 0.920 7 N -0.702 5.702 8 C 0.510 3.490 9 O -0.574 6.574 10 C 0.047 3.953 11 O -0.396 6.396 12 C 0.073 3.927 13 C -0.152 4.152 14 C -0.174 4.174 15 C -0.133 4.133 16 C 0.054 3.946 17 N -0.503 5.503 18 C 0.040 3.960 19 C 0.437 3.563 20 O -0.617 6.617 21 N -0.573 5.573 22 C -0.332 4.332 23 H 0.077 0.923 24 C -0.011 4.011 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.271 1.271 28 H -0.270 1.270 29 H -0.276 1.276 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.090 0.910 34 H 0.055 0.945 35 H 0.420 0.580 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.086 0.914 39 H 0.049 0.951 40 H 0.093 0.907 41 H 0.055 0.945 42 H 0.063 0.937 43 H 0.084 0.916 44 H 0.048 0.952 45 H 0.085 0.915 46 H 0.060 0.940 47 H 0.033 0.967 48 H 0.058 0.942 49 H 0.125 0.875 50 H 0.070 0.930 51 H 0.396 0.604 52 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.398 -10.515 -23.483 29.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.141 4.141 3 C -0.042 4.042 4 H 0.101 0.899 5 C 0.053 3.947 6 H 0.098 0.902 7 N -0.356 5.356 8 C 0.297 3.703 9 O -0.452 6.452 10 C -0.032 4.032 11 O -0.315 6.315 12 C 0.016 3.984 13 C -0.209 4.209 14 C -0.232 4.232 15 C -0.173 4.173 16 C -0.074 4.074 17 N -0.229 5.229 18 C -0.091 4.091 19 C 0.225 3.775 20 O -0.503 6.503 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.095 0.905 24 C -0.211 4.211 25 N -0.560 5.560 26 Si 0.815 3.185 27 H -0.197 1.197 28 H -0.194 1.194 29 H -0.200 1.200 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.258 0.742 36 H 0.128 0.872 37 H 0.127 0.873 38 H 0.103 0.897 39 H 0.068 0.932 40 H 0.111 0.889 41 H 0.074 0.926 42 H 0.082 0.918 43 H 0.103 0.897 44 H 0.067 0.933 45 H 0.103 0.897 46 H 0.079 0.921 47 H 0.052 0.948 48 H 0.077 0.923 49 H 0.143 0.857 50 H 0.088 0.912 51 H 0.230 0.770 52 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.383 -10.984 -21.628 28.724 hybrid contribution -1.073 1.397 -0.093 1.764 sum 14.309 -9.588 -21.721 27.722 Atomic orbital electron populations 1.21978 0.95360 1.02697 1.01353 1.21437 0.96345 0.93579 1.02704 1.23144 0.92674 0.96937 0.91481 0.89895 1.21555 0.92791 0.96916 0.83460 0.90218 1.45635 1.12471 1.68818 1.08680 1.20980 0.81686 0.75774 0.91814 1.90741 1.59172 1.49871 1.45373 1.22369 0.84980 1.03198 0.92676 1.88045 1.24272 1.88583 1.30642 1.22400 0.94357 0.97678 0.83980 1.21901 0.93810 1.01922 1.03253 1.22305 1.02698 0.96296 1.01858 1.22773 0.97094 0.97600 0.99784 1.22612 0.92085 0.92256 1.00484 1.64403 1.00880 1.24177 1.33393 1.22363 0.92605 0.99672 0.94436 1.20825 0.82699 0.83617 0.90370 1.90500 1.48123 1.67002 1.44685 1.41904 1.15866 1.44233 1.19063 1.19629 1.02046 1.26747 0.97785 0.90545 1.25982 0.94828 0.98671 1.01607 1.69660 1.08310 1.43938 1.34051 0.84963 0.77698 0.78254 0.77630 1.19689 1.19439 1.20047 0.91637 0.91214 0.93728 0.89127 0.92612 0.74198 0.87187 0.87266 0.89653 0.93171 0.88860 0.92620 0.91816 0.89670 0.93279 0.89664 0.92073 0.94818 0.92349 0.85743 0.91226 0.76994 0.91309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.97 8.35 71.98 0.60 -2.37 16 2 C -0.10 -1.98 5.69 30.59 0.17 -1.81 16 3 C 0.07 1.44 2.08 45.26 0.09 1.54 16 4 H 0.08 1.42 7.78 -2.39 -0.02 1.40 16 5 C 0.16 3.69 2.78 46.20 0.13 3.82 16 6 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 7 N -0.70 -11.20 5.15 -436.84 -2.25 -13.45 16 8 C 0.51 10.67 7.90 87.66 0.69 11.36 16 9 O -0.57 -18.95 16.22 16.00 0.26 -18.69 16 10 C 0.05 0.59 6.23 71.24 0.44 1.04 16 11 O -0.40 -7.65 9.52 -129.94 -1.24 -8.89 16 12 C 0.07 0.84 3.34 30.59 0.10 0.94 16 13 C -0.15 -1.74 9.56 71.98 0.69 -1.05 16 14 C -0.17 -1.62 9.53 71.98 0.69 -0.94 16 15 C -0.13 -3.62 6.67 31.47 0.21 -3.41 16 16 C 0.05 1.85 5.31 86.44 0.46 2.31 16 17 N -0.50 -16.18 4.84 -862.82 -4.17 -20.36 16 18 C 0.04 1.36 4.71 85.55 0.40 1.76 16 19 C 0.44 20.86 7.35 87.65 0.64 21.51 16 20 O -0.62 -34.48 13.94 -3.08 -0.04 -34.52 16 21 N -0.57 -29.33 5.29 -306.99 -1.62 -30.96 16 22 C -0.33 -18.95 9.68 84.04 0.81 -18.14 16 23 H 0.08 4.68 7.16 -2.91 -0.02 4.66 16 24 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 25 N -0.92 -49.17 13.05 21.66 0.28 -48.89 16 26 Si 0.99 43.16 29.55 68.60 2.03 45.18 16 27 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 28 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 29 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 30 H 0.06 1.09 7.62 -2.39 -0.02 1.07 16 31 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.04 1.07 6.28 -2.39 -0.01 1.05 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.42 3.27 8.54 -92.71 -0.79 2.47 16 36 H 0.11 0.69 7.87 -2.39 -0.02 0.67 16 37 H 0.11 0.72 8.09 -2.39 -0.02 0.70 16 38 H 0.09 0.56 7.79 -2.39 -0.02 0.54 16 39 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.09 0.60 8.14 -2.39 -0.02 0.58 16 41 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.06 0.50 7.87 -2.39 -0.02 0.48 16 43 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 44 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 45 H 0.08 1.98 8.05 -2.39 -0.02 1.96 16 46 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 47 H 0.03 1.18 7.69 -2.38 -0.02 1.16 16 48 H 0.06 2.48 6.94 -2.39 -0.02 2.47 16 49 H 0.13 3.79 4.40 -2.39 -0.01 3.78 16 50 H 0.07 2.04 7.99 -2.39 -0.02 2.03 16 51 H 0.40 19.11 7.90 -92.71 -0.73 18.37 16 52 H 0.28 13.90 8.31 -92.71 -0.77 13.13 16 Total: -1.00 -79.28 414.71 -0.75 -80.03 By element: Atomic # 1 Polarization: 34.70 SS G_CDS: -0.60 Total: 34.10 kcal Atomic # 6 Polarization: 9.83 SS G_CDS: 6.61 Total: 16.43 kcal Atomic # 7 Polarization: -105.89 SS G_CDS: -7.76 Total: -113.65 kcal Atomic # 8 Polarization: -61.08 SS G_CDS: -1.02 Total: -62.10 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 2.03 Total: 45.18 kcal Total: -79.28 -0.75 -80.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001489105746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.033 kcal (2) G-P(sol) polarization free energy of solvation -79.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds