Wall clock time and date at job start Wed Apr 1 2020 00:58:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 H 1.09004 * 109.47716 * 56.96632 * 3 2 1 5 5 O 1.42898 * 109.46998 * 296.96472 * 3 2 1 6 6 C 1.42902 * 114.00057 * 150.44515 * 5 3 2 7 7 C 1.50707 * 109.47370 * 176.96426 * 3 2 1 8 8 O 1.21281 * 119.99709 * 119.99684 * 7 3 2 9 9 N 1.34778 * 119.99784 * 300.00064 * 7 3 2 10 10 C 1.46498 * 120.00217 * 359.97438 * 9 7 3 11 11 C 1.46499 * 119.99798 * 179.97438 * 9 7 3 12 12 C 1.53116 * 109.52256 * 239.68145 * 11 9 7 13 13 C 1.53043 * 109.27891 * 182.44035 * 12 11 9 14 14 N 1.46849 * 109.51921 * 59.18210 * 13 12 11 15 15 C 1.46898 * 110.99435 * 174.16269 * 14 13 12 16 16 C 1.50699 * 109.47354 * 294.20405 * 15 14 13 17 17 O 1.21297 * 119.99584 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00410 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00229 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00155 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00212 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46913 * 60.00144 * 23 21 19 25 25 H 1.48495 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47090 * 300.00778 * 23 21 19 27 27 C 1.46849 * 111.19824 * 298.25485 * 14 13 12 28 28 C 1.53043 * 109.52096 * 61.74507 * 27 14 13 29 29 H 1.08995 * 109.47525 * 176.15380 * 1 2 3 30 30 H 1.09004 * 109.47312 * 296.15553 * 1 2 3 31 31 H 1.09002 * 109.46964 * 56.15406 * 1 2 3 32 32 H 1.09003 * 109.47490 * 239.99599 * 2 1 3 33 33 H 1.09006 * 109.46790 * 120.00293 * 2 1 3 34 34 H 1.08999 * 109.47571 * 64.38513 * 6 5 3 35 35 H 1.09002 * 109.47239 * 184.38945 * 6 5 3 36 36 H 1.09002 * 109.47024 * 304.38335 * 6 5 3 37 37 H 1.09003 * 109.46959 * 89.99706 * 10 9 7 38 38 H 1.09001 * 109.47360 * 210.00215 * 10 9 7 39 39 H 1.09007 * 109.47080 * 330.00456 * 10 9 7 40 40 H 1.08997 * 109.52340 * 359.87391 * 11 9 7 41 41 H 1.08992 * 109.50632 * 302.38170 * 12 11 9 42 42 H 1.09004 * 109.50269 * 62.49986 * 12 11 9 43 43 H 1.08996 * 109.46000 * 299.16151 * 13 12 11 44 44 H 1.08999 * 109.45018 * 179.19069 * 13 12 11 45 45 H 1.09002 * 109.47419 * 54.20967 * 15 14 13 46 46 H 1.09010 * 109.46859 * 174.20623 * 15 14 13 47 47 H 0.97005 * 119.99507 * 0.02562 * 18 16 15 48 48 H 0.96996 * 120.00205 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.46352 * 301.72974 * 27 14 13 50 50 H 1.09000 * 109.45468 * 181.75745 * 27 14 13 51 51 H 1.08998 * 109.49999 * 180.88265 * 28 27 14 52 52 H 1.08994 * 109.50228 * 60.76562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6330 1.9718 0.8615 5 8 1.6228 2.0951 -1.2008 6 6 1.4308 3.5042 -1.0599 7 6 3.5452 1.4431 0.0752 8 8 4.1964 1.9523 -0.8121 9 7 4.1675 0.8777 1.1286 10 6 3.3807 0.2630 2.2007 11 6 5.6306 0.8779 1.2015 12 6 6.1402 -0.5648 1.2607 13 6 7.6644 -0.5572 1.3981 14 7 8.0434 0.1653 2.6191 15 6 9.4902 0.0744 2.8568 16 6 9.8622 -1.3562 3.1501 17 8 9.0063 -2.2156 3.1597 18 7 11.1459 -1.6807 3.4018 19 6 11.4844 -2.9823 3.6681 20 1 10.7224 -3.7477 3.6759 21 6 12.8078 -3.3169 3.9270 22 7 13.7351 -2.3857 3.9171 23 14 13.2690 -5.0902 4.2907 24 1 12.9030 -5.9443 3.1322 25 1 14.7315 -5.1822 4.5303 26 1 12.5388 -5.5540 5.4977 27 6 7.6060 1.5660 2.5647 28 6 6.0800 1.6217 2.4622 29 1 -0.3634 -1.0253 -0.0689 30 1 -0.3634 0.4530 0.9225 31 1 -0.3633 0.5724 -0.8535 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3834 3.9791 -0.8256 35 1 1.0406 3.9127 -1.9921 36 1 0.7216 3.6954 -0.2545 37 1 3.2105 -0.7885 1.9693 38 1 3.9236 0.3446 3.1424 39 1 2.4227 0.7755 2.2880 40 1 6.0392 1.3736 0.3209 41 1 5.7000 -1.0713 2.1196 42 1 5.8598 -1.0876 0.3462 43 1 8.1045 -0.0628 0.5321 44 1 8.0289 -1.5828 1.4550 45 1 10.0261 0.4148 1.9708 46 1 9.7587 0.7013 3.7072 47 1 11.8303 -0.9933 3.3945 48 1 14.6589 -2.6193 4.0983 49 1 8.0465 2.0505 1.6932 50 1 7.9283 2.0824 3.4689 51 1 5.7568 2.6611 2.4060 52 1 5.6389 1.1497 3.3400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490402473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:15 Heat of formation + Delta-G solvation = -105.446742 kcal Electronic energy + Delta-G solvation = -30880.329392 eV Core-core repulsion = 26687.368708 eV Total energy + Delta-G solvation = -4192.960683 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.76931 -39.19166 -38.06727 -37.24977 -35.81294 -34.13150 -33.78404 -32.00905 -31.18784 -30.72346 -28.40137 -27.64508 -26.90418 -26.20414 -24.47495 -23.11674 -22.84768 -22.05774 -19.98431 -19.37440 -19.17775 -17.85398 -17.78825 -17.09266 -16.41135 -16.04163 -15.65137 -15.43912 -15.26044 -14.89715 -14.73031 -14.54114 -14.31515 -13.97869 -13.85097 -13.76423 -13.46656 -13.33889 -13.15493 -13.05428 -12.80800 -12.68156 -12.30266 -12.25630 -11.88495 -11.83971 -11.58028 -11.47217 -11.35678 -11.18136 -11.13074 -11.06889 -10.99605 -10.77664 -10.58056 -10.45151 -10.41258 -10.20774 -9.46952 -9.41779 -8.80231 -8.42532 -7.97025 -7.83179 -6.40930 -3.81754 2.34568 2.66341 3.20245 3.26031 3.30181 3.42100 3.90975 3.99539 4.12518 4.24903 4.43182 4.47063 4.71553 4.77935 4.84898 4.87930 4.93493 5.05076 5.07158 5.09806 5.13316 5.18415 5.26036 5.28053 5.33544 5.38310 5.40869 5.49781 5.52792 5.60849 5.67264 5.69394 5.69885 5.81660 5.85194 5.90157 5.98825 6.02576 6.10830 6.26276 6.32061 6.39670 6.51275 6.67761 7.15588 7.31111 7.42974 7.55588 7.96261 8.06981 8.62650 9.18712 9.55407 10.07193 10.76720 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.001984 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.965234 B =14107.216715 C =14677.905363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.131 4.131 3 C 0.077 3.923 4 H 0.085 0.915 5 O -0.357 6.357 6 C 0.029 3.971 7 C 0.489 3.511 8 O -0.528 6.528 9 N -0.606 5.606 10 C 0.069 3.931 11 C 0.136 3.864 12 C -0.117 4.117 13 C 0.055 3.945 14 N -0.515 5.515 15 C 0.046 3.954 16 C 0.444 3.556 17 O -0.578 6.578 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.274 1.274 25 H -0.285 1.285 26 H -0.274 1.274 27 C 0.057 3.943 28 C -0.120 4.120 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.093 0.907 34 H 0.046 0.954 35 H 0.089 0.911 36 H 0.041 0.959 37 H 0.064 0.936 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.065 0.935 43 H 0.023 0.977 44 H 0.108 0.892 45 H 0.047 0.953 46 H 0.088 0.912 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.031 0.969 50 H 0.077 0.923 51 H 0.065 0.935 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.551 11.354 -4.299 26.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.168 4.168 3 C 0.015 3.985 4 H 0.103 0.897 5 O -0.274 6.274 6 C -0.067 4.067 7 C 0.276 3.724 8 O -0.404 6.404 9 N -0.341 5.341 10 C -0.074 4.074 11 C 0.033 3.967 12 C -0.155 4.155 13 C -0.073 4.073 14 N -0.240 5.240 15 C -0.085 4.085 16 C 0.229 3.771 17 O -0.462 6.462 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.071 4.071 28 C -0.159 4.159 29 H 0.079 0.921 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.099 0.901 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.084 0.916 43 H 0.041 0.959 44 H 0.126 0.874 45 H 0.065 0.935 46 H 0.107 0.893 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.050 0.950 50 H 0.096 0.904 51 H 0.084 0.916 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -23.854 10.722 -4.535 26.543 hybrid contribution 1.299 0.216 -0.134 1.323 sum -22.555 10.938 -4.669 25.498 Atomic orbital electron populations 1.21709 0.94376 1.02258 1.02224 1.21884 0.97425 0.92999 1.04533 1.22092 0.90506 0.96395 0.89475 0.89693 1.87978 1.86913 1.20632 1.31862 1.22863 1.00138 0.81385 1.02332 1.21448 0.91095 0.78182 0.81629 1.90700 1.67111 1.44825 1.37729 1.47978 1.06995 1.57489 1.21620 1.22021 0.95865 0.98205 0.91295 1.21274 0.78395 0.97425 0.99559 1.21866 0.96191 0.95095 1.02396 1.22218 0.94226 1.01788 0.89059 1.61541 1.13774 1.11263 1.37410 1.21834 0.88056 0.97572 1.01050 1.19740 0.83445 0.89390 0.84488 1.90476 1.48724 1.50323 1.56688 1.41868 1.06621 1.10033 1.61563 1.19637 0.93500 0.85181 1.44494 0.87976 1.25261 0.95429 0.99807 0.97493 1.69604 1.01886 1.33305 1.49546 0.85920 0.77152 0.82019 0.79129 1.19942 1.21012 1.19907 1.22050 0.94551 0.89723 1.00808 1.21893 0.95879 0.99952 0.98151 0.92121 0.92801 0.91795 0.90454 0.88891 0.93558 0.89259 0.94047 0.91721 0.90086 0.91180 0.88546 0.90485 0.91627 0.95857 0.87420 0.93470 0.89332 0.77495 0.91841 0.95039 0.90417 0.91625 0.90515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.84 37.16 0.37 -0.51 16 2 C -0.13 -0.96 5.30 -26.74 -0.14 -1.11 16 3 C 0.08 0.69 1.74 -27.88 -0.05 0.65 16 4 H 0.09 0.57 6.99 -51.93 -0.36 0.20 16 5 O -0.36 -3.85 9.28 -55.14 -0.51 -4.36 16 6 C 0.03 0.24 10.82 101.05 1.09 1.33 16 7 C 0.49 5.92 7.11 -10.98 -0.08 5.84 16 8 O -0.53 -8.62 15.79 -14.35 -0.23 -8.84 16 9 N -0.61 -6.36 2.77 -173.79 -0.48 -6.84 16 10 C 0.07 0.49 7.81 59.85 0.47 0.96 16 11 C 0.14 1.68 2.59 -67.81 -0.18 1.50 16 12 C -0.12 -1.59 5.41 -26.65 -0.14 -1.73 16 13 C 0.06 0.90 5.11 -3.83 -0.02 0.88 16 14 N -0.52 -8.41 4.40 -236.10 -1.04 -9.45 16 15 C 0.05 0.82 5.45 -4.98 -0.03 0.79 16 16 C 0.44 10.33 7.46 -10.99 -0.08 10.24 16 17 O -0.58 -15.18 13.90 5.54 0.08 -15.10 16 18 N -0.56 -14.19 5.29 -10.96 -0.06 -14.25 16 19 C -0.30 -8.26 9.68 -14.94 -0.14 -8.40 16 20 H 0.10 2.95 7.16 -52.48 -0.38 2.57 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 22 N -0.90 -24.50 13.05 55.50 0.72 -23.77 16 23 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 27 C 0.06 0.74 5.46 -3.83 -0.02 0.72 16 28 C -0.12 -1.35 5.40 -26.65 -0.14 -1.49 16 29 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.44 7.66 -51.93 -0.40 0.04 16 32 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.09 0.55 4.48 -51.93 -0.23 0.32 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.04 0.24 7.99 -51.93 -0.41 -0.18 16 37 H 0.06 0.42 6.89 -51.93 -0.36 0.06 16 38 H 0.08 0.57 6.39 -51.93 -0.33 0.24 16 39 H 0.07 0.34 6.04 -51.93 -0.31 0.02 16 40 H 0.10 1.40 6.90 -51.93 -0.36 1.04 16 41 H 0.08 1.06 7.59 -51.93 -0.39 0.67 16 42 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 43 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 44 H 0.11 2.14 5.78 -51.93 -0.30 1.84 16 45 H 0.05 0.78 8.12 -51.93 -0.42 0.36 16 46 H 0.09 1.41 7.99 -51.92 -0.41 1.00 16 47 H 0.39 9.46 7.90 -40.82 -0.32 9.14 16 48 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 49 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 50 H 0.08 0.91 8.01 -51.93 -0.42 0.49 16 51 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 52 H 0.08 0.84 6.58 -51.93 -0.34 0.50 16 LS Contribution 404.07 15.07 6.09 6.09 Total: -1.00 -33.64 404.07 -8.34 -41.98 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -8.70 Total: 8.43 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 0.80 Total: 10.14 kcal Atomic # 7 Polarization: -53.46 SS G_CDS: -0.85 Total: -54.31 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -0.66 Total: -28.31 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.64 -8.34 -41.98 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490402473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.467 kcal (2) G-P(sol) polarization free energy of solvation -33.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds