Wall clock time and date at job start Wed Apr 1 2020 00:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52993 * 109.47332 * 2 1 4 4 H 1.09004 * 109.47716 * 56.96632 * 3 2 1 5 5 O 1.42898 * 109.46998 * 296.96472 * 3 2 1 6 6 C 1.42902 * 114.00057 * 150.44515 * 5 3 2 7 7 C 1.50707 * 109.47370 * 176.96426 * 3 2 1 8 8 O 1.21281 * 119.99709 * 119.99684 * 7 3 2 9 9 N 1.34778 * 119.99784 * 300.00064 * 7 3 2 10 10 C 1.46498 * 120.00217 * 359.97438 * 9 7 3 11 11 C 1.46499 * 119.99798 * 179.97438 * 9 7 3 12 12 C 1.53116 * 109.52256 * 239.68145 * 11 9 7 13 13 C 1.53043 * 109.27891 * 182.44035 * 12 11 9 14 14 N 1.46849 * 109.51921 * 59.18210 * 13 12 11 15 15 C 1.46898 * 110.99435 * 174.16269 * 14 13 12 16 16 C 1.50699 * 109.47354 * 294.20405 * 15 14 13 17 17 O 1.21297 * 119.99584 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00410 * 180.02562 * 16 15 14 19 19 C 1.37095 * 120.00229 * 180.02562 * 18 16 15 20 20 H 1.08003 * 119.99991 * 0.02562 * 19 18 16 21 21 C 1.38945 * 120.00155 * 179.97438 * 19 18 16 22 22 N 1.31415 * 120.00212 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 120.00292 * 179.97438 * 21 19 18 24 24 H 1.48510 * 109.46913 * 60.00144 * 23 21 19 25 25 H 1.48495 * 109.47422 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47090 * 300.00778 * 23 21 19 27 27 C 1.46849 * 111.19824 * 298.25485 * 14 13 12 28 28 C 1.53043 * 109.52096 * 61.74507 * 27 14 13 29 29 H 1.08995 * 109.47525 * 176.15380 * 1 2 3 30 30 H 1.09004 * 109.47312 * 296.15553 * 1 2 3 31 31 H 1.09002 * 109.46964 * 56.15406 * 1 2 3 32 32 H 1.09003 * 109.47490 * 239.99599 * 2 1 3 33 33 H 1.09006 * 109.46790 * 120.00293 * 2 1 3 34 34 H 1.08999 * 109.47571 * 64.38513 * 6 5 3 35 35 H 1.09002 * 109.47239 * 184.38945 * 6 5 3 36 36 H 1.09002 * 109.47024 * 304.38335 * 6 5 3 37 37 H 1.09003 * 109.46959 * 89.99706 * 10 9 7 38 38 H 1.09001 * 109.47360 * 210.00215 * 10 9 7 39 39 H 1.09007 * 109.47080 * 330.00456 * 10 9 7 40 40 H 1.08997 * 109.52340 * 359.87391 * 11 9 7 41 41 H 1.08992 * 109.50632 * 302.38170 * 12 11 9 42 42 H 1.09004 * 109.50269 * 62.49986 * 12 11 9 43 43 H 1.08996 * 109.46000 * 299.16151 * 13 12 11 44 44 H 1.08999 * 109.45018 * 179.19069 * 13 12 11 45 45 H 1.09002 * 109.47419 * 54.20967 * 15 14 13 46 46 H 1.09010 * 109.46859 * 174.20623 * 15 14 13 47 47 H 0.97005 * 119.99507 * 0.02562 * 18 16 15 48 48 H 0.96996 * 120.00205 * 179.97438 * 22 21 19 49 49 H 1.09007 * 109.46352 * 301.72974 * 27 14 13 50 50 H 1.09000 * 109.45468 * 181.75745 * 27 14 13 51 51 H 1.08998 * 109.49999 * 180.88265 * 28 27 14 52 52 H 1.08994 * 109.50228 * 60.76562 * 28 27 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6330 1.9718 0.8615 5 8 1.6228 2.0951 -1.2008 6 6 1.4308 3.5042 -1.0599 7 6 3.5452 1.4431 0.0752 8 8 4.1964 1.9523 -0.8121 9 7 4.1675 0.8777 1.1286 10 6 3.3807 0.2630 2.2007 11 6 5.6306 0.8779 1.2015 12 6 6.1402 -0.5648 1.2607 13 6 7.6644 -0.5572 1.3981 14 7 8.0434 0.1653 2.6191 15 6 9.4902 0.0744 2.8568 16 6 9.8622 -1.3562 3.1501 17 8 9.0063 -2.2156 3.1597 18 7 11.1459 -1.6807 3.4018 19 6 11.4844 -2.9823 3.6681 20 1 10.7224 -3.7477 3.6759 21 6 12.8078 -3.3169 3.9270 22 7 13.7351 -2.3857 3.9171 23 14 13.2690 -5.0902 4.2907 24 1 12.9030 -5.9443 3.1322 25 1 14.7315 -5.1822 4.5303 26 1 12.5388 -5.5540 5.4977 27 6 7.6060 1.5660 2.5647 28 6 6.0800 1.6217 2.4622 29 1 -0.3634 -1.0253 -0.0689 30 1 -0.3634 0.4530 0.9225 31 1 -0.3633 0.5724 -0.8535 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 2.3834 3.9791 -0.8256 35 1 1.0406 3.9127 -1.9921 36 1 0.7216 3.6954 -0.2545 37 1 3.2105 -0.7885 1.9693 38 1 3.9236 0.3446 3.1424 39 1 2.4227 0.7755 2.2880 40 1 6.0392 1.3736 0.3209 41 1 5.7000 -1.0713 2.1196 42 1 5.8598 -1.0876 0.3462 43 1 8.1045 -0.0628 0.5321 44 1 8.0289 -1.5828 1.4550 45 1 10.0261 0.4148 1.9708 46 1 9.7587 0.7013 3.7072 47 1 11.8303 -0.9933 3.3945 48 1 14.6589 -2.6193 4.0983 49 1 8.0465 2.0505 1.6932 50 1 7.9283 2.0824 3.4689 51 1 5.7568 2.6611 2.4060 52 1 5.6389 1.1497 3.3400 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001490402473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:58:14 Heat of formation + Delta-G solvation = -129.256908 kcal Electronic energy + Delta-G solvation = -30881.361878 eV Core-core repulsion = 26687.368708 eV Total energy + Delta-G solvation = -4193.993170 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.67018 -40.56623 -39.38500 -38.32550 -36.85216 -35.88941 -34.74772 -33.33988 -32.89692 -31.85011 -29.29974 -28.60736 -27.80966 -27.10919 -26.14592 -24.25283 -23.93861 -22.77226 -21.07126 -20.90292 -20.31516 -19.85877 -18.58152 -17.93762 -17.70717 -17.27732 -16.71627 -16.56089 -16.40918 -16.25130 -15.95169 -15.73184 -15.41383 -15.35791 -15.05261 -14.88207 -14.49033 -14.43565 -14.25430 -13.94406 -13.78793 -13.48927 -13.41188 -13.27402 -13.15798 -12.93965 -12.87145 -12.71799 -12.46363 -12.42694 -12.31471 -12.20197 -12.11684 -11.91586 -11.77874 -11.61962 -11.57955 -11.52828 -11.37436 -10.32583 -10.20986 -9.98603 -9.67668 -9.22718 -8.44885 -5.93326 1.40343 1.41978 1.46108 1.52856 1.83885 2.07312 2.29059 2.74366 2.78050 3.21843 3.37004 3.39130 3.74394 3.82277 3.86627 3.88091 4.00715 4.17375 4.22560 4.27718 4.34833 4.36130 4.41615 4.46242 4.47096 4.51870 4.54062 4.55982 4.61453 4.63731 4.71625 4.77913 4.81829 4.90994 4.93462 4.97286 5.06604 5.10190 5.13386 5.18277 5.29730 5.42102 5.44722 5.47871 5.88655 6.00426 6.07583 6.21602 6.35834 6.62429 7.08086 7.14597 7.58564 8.14165 8.72283 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.025849 B = 0.001984 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.965234 B =14107.216715 C =14677.905363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.080 3.920 4 H 0.118 0.882 5 O -0.382 6.382 6 C 0.025 3.975 7 C 0.483 3.517 8 O -0.581 6.581 9 N -0.601 5.601 10 C 0.059 3.941 11 C 0.142 3.858 12 C -0.105 4.105 13 C 0.059 3.941 14 N -0.526 5.526 15 C 0.057 3.943 16 C 0.442 3.558 17 O -0.611 6.611 18 N -0.576 5.576 19 C -0.330 4.330 20 H 0.080 0.920 21 C -0.015 4.015 22 N -0.922 5.922 23 Si 0.993 3.007 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C 0.056 3.944 28 C -0.110 4.110 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.110 0.890 34 H 0.029 0.971 35 H 0.098 0.902 36 H 0.069 0.931 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.100 0.900 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.060 0.940 43 H 0.023 0.977 44 H 0.068 0.932 45 H 0.062 0.938 46 H 0.114 0.886 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.034 0.966 50 H 0.097 0.903 51 H 0.082 0.918 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.238 12.169 -2.866 28.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.019 3.981 4 H 0.135 0.865 5 O -0.300 6.300 6 C -0.071 4.071 7 C 0.272 3.728 8 O -0.460 6.460 9 N -0.334 5.334 10 C -0.082 4.082 11 C 0.038 3.962 12 C -0.144 4.144 13 C -0.070 4.070 14 N -0.251 5.251 15 C -0.075 4.075 16 C 0.230 3.770 17 O -0.497 6.497 18 N -0.213 5.213 19 C -0.460 4.460 20 H 0.098 0.902 21 C -0.215 4.215 22 N -0.563 5.563 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.196 1.196 27 C -0.071 4.071 28 C -0.149 4.149 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.047 0.953 35 H 0.116 0.884 36 H 0.087 0.913 37 H 0.091 0.909 38 H 0.104 0.896 39 H 0.119 0.881 40 H 0.090 0.910 41 H 0.096 0.904 42 H 0.079 0.921 43 H 0.041 0.959 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.132 0.868 47 H 0.229 0.771 48 H 0.086 0.914 49 H 0.052 0.948 50 H 0.115 0.885 51 H 0.100 0.900 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -25.562 11.551 -3.078 28.219 hybrid contribution 1.779 -0.017 -0.604 1.879 sum -23.783 11.534 -3.682 26.688 Atomic orbital electron populations 1.21682 0.92945 1.02734 1.02741 1.21921 0.98564 0.91826 1.04262 1.22266 0.88125 0.97605 0.90140 0.86505 1.87954 1.86796 1.21969 1.33242 1.22999 0.99970 0.80114 1.03971 1.22149 0.92460 0.77236 0.80977 1.90673 1.68394 1.47265 1.39679 1.48014 1.06338 1.56945 1.22112 1.22332 0.96833 0.98889 0.90157 1.21030 0.79829 0.96029 0.99278 1.21724 0.94255 0.96290 1.02125 1.22056 0.96021 0.99557 0.89346 1.61536 1.12712 1.13615 1.37249 1.21731 0.89407 0.93686 1.02634 1.20734 0.82390 0.91508 0.82411 1.90455 1.49520 1.52186 1.57531 1.41942 1.07506 1.09418 1.62440 1.19612 0.93737 0.86074 1.46559 0.90214 1.26041 0.94897 1.03780 0.96760 1.69670 1.02199 1.34867 1.49533 0.84992 0.77344 0.77194 0.78831 1.19825 1.19639 1.19593 1.22179 0.95629 0.87452 1.01880 1.21831 0.94677 1.00785 0.97569 0.91463 0.90805 0.92965 0.92759 0.87182 0.95270 0.88364 0.91255 0.90917 0.89575 0.88125 0.91014 0.90405 0.92098 0.95921 0.91400 0.92053 0.86789 0.77106 0.91388 0.94769 0.88508 0.89973 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.84 71.98 0.71 -0.63 16 2 C -0.13 -1.65 5.30 30.59 0.16 -1.49 16 3 C 0.08 1.29 1.74 29.85 0.05 1.35 16 4 H 0.12 1.12 6.99 -2.39 -0.02 1.11 16 5 O -0.38 -7.91 9.28 -129.94 -1.21 -9.12 16 6 C 0.03 0.38 10.82 113.37 1.23 1.60 16 7 C 0.48 11.32 7.11 87.66 0.62 11.94 16 8 O -0.58 -19.40 15.79 16.00 0.25 -19.15 16 9 N -0.60 -11.71 2.77 -822.14 -2.28 -13.99 16 10 C 0.06 0.66 7.81 127.77 1.00 1.66 16 11 C 0.14 3.39 2.59 45.07 0.12 3.50 16 12 C -0.11 -2.87 5.41 30.65 0.17 -2.70 16 13 C 0.06 1.96 5.11 86.33 0.44 2.40 16 14 N -0.53 -16.73 4.40 -900.88 -3.96 -20.69 16 15 C 0.06 1.96 5.45 85.56 0.47 2.43 16 16 C 0.44 20.93 7.46 87.66 0.65 21.58 16 17 O -0.61 -33.09 13.90 -3.08 -0.04 -33.14 16 18 N -0.58 -29.55 5.29 -306.99 -1.62 -31.17 16 19 C -0.33 -18.72 9.68 84.04 0.81 -17.90 16 20 H 0.08 4.79 7.16 -2.91 -0.02 4.77 16 21 C -0.02 -0.82 5.50 84.92 0.47 -0.35 16 22 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 23 Si 0.99 43.04 29.55 68.60 2.03 45.07 16 24 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 27 C 0.06 1.33 5.46 86.33 0.47 1.80 16 28 C -0.11 -2.23 5.40 30.65 0.17 -2.06 16 29 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.05 0.62 7.66 -2.39 -0.02 0.60 16 32 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.11 0.99 4.48 -2.38 -0.01 0.98 16 34 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.61 7.99 -2.39 -0.02 0.60 16 37 H 0.07 0.74 6.89 -2.39 -0.02 0.72 16 38 H 0.09 0.93 6.39 -2.39 -0.02 0.92 16 39 H 0.10 0.53 6.04 -2.38 -0.01 0.52 16 40 H 0.07 2.11 6.90 -2.39 -0.02 2.09 16 41 H 0.08 2.11 7.59 -2.39 -0.02 2.09 16 42 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 43 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 2.83 5.78 -2.39 -0.01 2.81 16 45 H 0.06 1.98 8.12 -2.39 -0.02 1.96 16 46 H 0.11 3.40 7.99 -2.38 -0.02 3.38 16 47 H 0.40 19.36 7.90 -92.70 -0.73 18.62 16 48 H 0.28 14.11 8.31 -92.71 -0.77 13.34 16 49 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 50 H 0.10 1.95 8.01 -2.39 -0.02 1.93 16 51 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 52 H 0.09 1.62 6.58 -2.39 -0.02 1.61 16 Total: -1.00 -76.02 404.07 1.17 -74.84 By element: Atomic # 1 Polarization: 33.72 SS G_CDS: 0.19 Total: 33.91 kcal Atomic # 6 Polarization: 15.59 SS G_CDS: 7.53 Total: 23.12 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -7.58 Total: -115.54 kcal Atomic # 8 Polarization: -60.40 SS G_CDS: -1.00 Total: -61.40 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -76.02 1.17 -74.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490402473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.417 kcal (2) G-P(sol) polarization free energy of solvation -76.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds