Wall clock time and date at job start Wed Apr 1 2020 00:51:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 H 1.09003 * 109.47286 * 305.89817 * 3 2 1 5 5 O 1.42904 * 109.46859 * 65.89933 * 3 2 1 6 6 C 1.42899 * 113.99900 * 262.14246 * 5 3 2 7 7 C 1.50696 * 109.46935 * 185.90071 * 3 2 1 8 8 O 1.21289 * 119.99896 * 253.00668 * 7 3 2 9 9 N 1.34767 * 120.00386 * 73.00531 * 7 3 2 10 10 C 1.47430 * 125.64699 * 354.72955 * 9 7 3 11 11 C 1.54917 * 104.82940 * 204.09188 * 10 9 7 12 12 C 1.55154 * 101.58281 * 322.98505 * 11 10 9 13 13 C 1.47023 * 125.65401 * 174.41773 * 9 7 3 14 14 H 1.09005 * 109.88065 * 59.55751 * 13 9 7 15 15 C 1.52997 * 109.87995 * 298.40095 * 13 9 7 16 16 N 1.46901 * 109.47643 * 54.99572 * 15 13 9 17 17 C 1.46899 * 110.99793 * 66.04643 * 16 15 13 18 18 C 1.46900 * 110.99804 * 190.00310 * 16 15 13 19 19 C 1.50700 * 109.46767 * 169.99808 * 18 16 15 20 20 O 1.21295 * 120.00065 * 0.02562 * 19 18 16 21 21 N 1.34779 * 120.00300 * 179.97438 * 19 18 16 22 22 C 1.37093 * 120.00372 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00183 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00002 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00060 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47222 * 60.00012 * 26 24 22 28 28 H 1.48498 * 109.47223 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47309 * 299.99726 * 26 24 22 30 30 H 1.09003 * 109.46817 * 299.39162 * 1 2 3 31 31 H 1.09006 * 109.47459 * 59.38368 * 1 2 3 32 32 H 1.08996 * 109.47469 * 179.39335 * 1 2 3 33 33 H 1.08996 * 109.46539 * 240.00457 * 2 1 3 34 34 H 1.08994 * 109.47041 * 120.00712 * 2 1 3 35 35 H 1.09000 * 109.47445 * 65.40901 * 6 5 3 36 36 H 1.09000 * 109.46712 * 185.41128 * 6 5 3 37 37 H 1.09001 * 109.47244 * 305.40917 * 6 5 3 38 38 H 1.09000 * 110.36620 * 322.92690 * 10 9 7 39 39 H 1.08992 * 110.36737 * 85.25109 * 10 9 7 40 40 H 1.09000 * 111.00585 * 81.06300 * 11 10 9 41 41 H 1.09005 * 110.99825 * 204.87818 * 11 10 9 42 42 H 1.08997 * 110.71571 * 153.86444 * 12 11 10 43 43 H 1.08999 * 110.72311 * 276.96965 * 12 11 10 44 44 H 1.09002 * 109.46999 * 174.99897 * 15 13 9 45 45 H 1.09004 * 109.47138 * 294.99098 * 15 13 9 46 46 H 1.08990 * 109.46985 * 60.00318 * 17 16 15 47 47 H 1.09007 * 109.46571 * 180.02562 * 17 16 15 48 48 H 1.09001 * 109.46997 * 299.99899 * 17 16 15 49 49 H 1.08997 * 109.47328 * 289.99276 * 18 16 15 50 50 H 1.08997 * 109.47523 * 49.99795 * 18 16 15 51 51 H 0.97005 * 119.99435 * 0.02562 * 21 19 18 52 52 H 0.96997 * 119.99970 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5931 1.9860 -0.8325 5 8 1.6801 2.0750 1.2299 6 6 0.4998 2.8762 1.1477 7 6 3.5399 1.4450 -0.1461 8 8 4.2414 1.7184 0.8049 9 7 4.1019 1.1434 -1.3333 10 6 3.3793 0.6885 -2.5351 11 6 4.4343 -0.0883 -3.3618 12 6 5.7117 0.7549 -3.1076 13 6 5.5363 1.2198 -1.6464 14 1 6.0966 0.5632 -0.9807 15 6 6.0262 2.6611 -1.4937 16 7 5.6991 3.1495 -0.1474 17 6 6.4526 2.4140 0.8769 18 6 5.9372 4.5951 -0.0396 19 6 5.3659 5.1027 1.2592 20 8 4.8151 4.3356 2.0204 21 7 5.4679 6.4089 1.5756 22 6 4.9487 6.8706 2.7574 23 1 4.4582 6.1876 3.4352 24 6 5.0534 8.2173 3.0832 25 7 5.6506 9.0483 2.2588 26 14 4.3453 8.8465 4.6931 27 1 5.0024 8.1505 5.8285 28 1 4.5853 10.3079 4.8020 29 1 2.8846 8.5814 4.7286 30 1 -0.3633 0.5044 0.8954 31 1 -0.3634 0.5234 -0.8844 32 1 -0.3634 -1.0275 -0.0109 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 -0.3594 2.2376 0.9425 36 1 0.3477 3.3971 2.0931 37 1 0.6106 3.6052 0.3450 38 1 2.5562 0.0305 -2.2565 39 1 3.0081 1.5430 -3.1008 40 1 4.5552 -1.1040 -2.9852 41 1 4.1739 -0.0946 -4.4203 42 1 6.6063 0.1414 -3.2148 43 1 5.7494 1.6106 -3.7817 44 1 7.1058 2.6954 -1.6403 45 1 5.5385 3.2914 -2.2374 46 1 7.5210 2.5464 0.7071 47 1 6.1911 2.7953 1.8640 48 1 6.2042 1.3542 0.8196 49 1 7.0094 4.7897 -0.0656 50 1 5.4549 5.1059 -0.8730 51 1 5.9088 7.0222 0.9669 52 1 5.7241 9.9883 2.4864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505422692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:11 Heat of formation + Delta-G solvation = -68.809678 kcal Electronic energy + Delta-G solvation = -32769.180948 eV Core-core repulsion = 28577.808967 eV Total energy + Delta-G solvation = -4191.371981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.29081 -38.45568 -37.98002 -36.51735 -35.79898 -33.63424 -33.36439 -31.38759 -31.03112 -30.32856 -28.19073 -27.49135 -26.02194 -25.52925 -24.50808 -23.29189 -21.93107 -21.37099 -20.87552 -18.90088 -18.75957 -17.64294 -17.22523 -16.66376 -16.36752 -15.81209 -15.44778 -15.06485 -14.83459 -14.55256 -14.32299 -14.25384 -13.94988 -13.76320 -13.46342 -13.37563 -13.30698 -13.05960 -12.80558 -12.55314 -12.40042 -12.29232 -11.84231 -11.76163 -11.69399 -11.46175 -11.32422 -11.27664 -11.22391 -11.12243 -11.05326 -10.92789 -10.72335 -10.61727 -10.54961 -10.32323 -10.04544 -9.54019 -9.26181 -8.64271 -8.40520 -7.98767 -7.74147 -7.36888 -6.24664 -3.63737 2.99029 3.28138 3.30700 3.34188 3.39806 4.05762 4.16552 4.20185 4.35349 4.40171 4.57747 4.65371 4.83640 4.84518 4.94431 5.04403 5.18936 5.23211 5.27835 5.31149 5.36893 5.41250 5.46166 5.51013 5.53866 5.55677 5.60857 5.63782 5.68418 5.71120 5.80141 5.88866 5.91504 5.95439 6.01598 6.02928 6.14529 6.15210 6.27615 6.36802 6.54200 6.58086 7.08979 7.33152 7.63491 7.71221 7.82200 7.91791 8.26403 8.84369 8.90796 9.38557 9.76592 10.32391 10.94022 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003658 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.668041 B = 7652.765517 C = 9352.817042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.141 4.141 3 C 0.082 3.918 4 H 0.072 0.928 5 O -0.344 6.344 6 C 0.028 3.972 7 C 0.515 3.485 8 O -0.431 6.431 9 N -0.618 5.618 10 C 0.093 3.907 11 C -0.131 4.131 12 C -0.127 4.127 13 C 0.148 3.852 14 H 0.071 0.929 15 C 0.042 3.958 16 N -0.492 5.492 17 C 0.052 3.948 18 C 0.044 3.956 19 C 0.446 3.554 20 O -0.548 6.548 21 N -0.576 5.576 22 C -0.289 4.289 23 H 0.101 0.899 24 C 0.018 3.982 25 N -0.909 5.909 26 Si 0.927 3.073 27 H -0.275 1.275 28 H -0.286 1.286 29 H -0.275 1.275 30 H 0.064 0.936 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.076 0.924 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.040 0.960 38 H 0.076 0.924 39 H 0.062 0.938 40 H 0.074 0.926 41 H 0.080 0.920 42 H 0.079 0.921 43 H 0.077 0.923 44 H 0.033 0.967 45 H 0.069 0.931 46 H -0.013 1.013 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.039 0.961 50 H 0.077 0.923 51 H 0.389 0.611 52 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.481 -18.429 -15.484 24.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.020 3.980 4 H 0.090 0.910 5 O -0.261 6.261 6 C -0.068 4.068 7 C 0.300 3.700 8 O -0.296 6.296 9 N -0.358 5.358 10 C -0.030 4.030 11 C -0.169 4.169 12 C -0.166 4.166 13 C 0.044 3.956 14 H 0.089 0.911 15 C -0.088 4.088 16 N -0.216 5.216 17 C -0.095 4.095 18 C -0.088 4.088 19 C 0.231 3.769 20 O -0.429 6.429 21 N -0.215 5.215 22 C -0.419 4.419 23 H 0.118 0.882 24 C -0.182 4.182 25 N -0.552 5.552 26 Si 0.755 3.245 27 H -0.201 1.201 28 H -0.212 1.212 29 H -0.201 1.201 30 H 0.083 0.917 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.059 0.941 38 H 0.094 0.906 39 H 0.080 0.920 40 H 0.093 0.907 41 H 0.099 0.901 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.051 0.949 45 H 0.087 0.913 46 H 0.006 0.994 47 H 0.110 0.890 48 H 0.084 0.916 49 H 0.057 0.943 50 H 0.096 0.904 51 H 0.221 0.779 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.884 -18.666 -13.967 24.044 hybrid contribution 0.586 1.237 -0.260 1.394 sum -5.298 -17.428 -14.227 23.113 Atomic orbital electron populations 1.21897 0.95252 1.01911 1.02167 1.22061 0.96668 0.95956 1.03230 1.21885 0.93167 0.94086 0.88876 0.90998 1.88129 1.44078 1.64599 1.29309 1.22976 0.86899 0.93893 1.03057 1.19900 0.89262 0.78436 0.82389 1.90934 1.61381 1.40524 1.36807 1.48305 1.06695 1.70017 1.10830 1.22399 0.95653 0.97949 0.87044 1.22740 0.94902 0.99068 1.00167 1.22665 0.98446 1.00122 0.95325 1.21499 0.82810 0.96092 0.95242 0.91078 1.22623 0.97787 0.95542 0.92832 1.61880 1.56911 1.01557 1.01249 1.22363 0.90295 0.99053 0.97772 1.21877 0.98398 0.89965 0.98557 1.19808 0.85451 0.83212 0.88436 1.90595 1.45648 1.55137 1.51510 1.41866 1.52667 1.06857 1.20104 1.19627 1.33029 0.92781 0.96457 0.88161 1.25189 0.97899 0.95874 0.99266 1.69611 1.44223 1.04420 1.36918 0.85969 0.79402 0.77227 0.81892 1.20064 1.21172 1.20085 0.91717 0.92843 0.92434 0.90665 0.90532 0.94104 0.89358 0.94123 0.90608 0.92020 0.90712 0.90126 0.90251 0.90481 0.94907 0.91282 0.99440 0.89001 0.91591 0.94330 0.90446 0.77871 0.92165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.10 37.16 0.34 -1.02 16 2 C -0.14 -1.52 5.47 -26.73 -0.15 -1.66 16 3 C 0.08 1.16 2.07 -27.88 -0.06 1.11 16 4 H 0.07 0.91 7.50 -51.93 -0.39 0.52 16 5 O -0.34 -6.13 9.74 -54.80 -0.53 -6.67 16 6 C 0.03 0.40 10.47 101.05 1.06 1.46 16 7 C 0.52 8.49 6.56 -10.99 -0.07 8.41 16 8 O -0.43 -9.11 10.20 -15.84 -0.16 -9.27 16 9 N -0.62 -7.79 3.06 -163.01 -0.50 -8.29 16 10 C 0.09 0.78 6.48 -2.52 -0.02 0.76 16 11 C -0.13 -0.83 7.09 -24.58 -0.17 -1.01 16 12 C -0.13 -0.97 6.48 -24.89 -0.16 -1.14 16 13 C 0.15 1.75 2.86 -66.95 -0.19 1.55 16 14 H 0.07 0.92 6.89 -51.93 -0.36 0.57 16 15 C 0.04 0.59 4.58 -3.82 -0.02 0.57 16 16 N -0.49 -9.25 2.04 -244.37 -0.50 -9.75 16 17 C 0.05 1.03 6.93 60.06 0.42 1.45 16 18 C 0.04 0.88 5.45 -4.98 -0.03 0.86 16 19 C 0.45 11.47 7.48 -10.98 -0.08 11.39 16 20 O -0.55 -15.99 13.44 5.48 0.07 -15.91 16 21 N -0.58 -15.65 5.29 -10.96 -0.06 -15.71 16 22 C -0.29 -8.52 9.68 -14.93 -0.14 -8.67 16 23 H 0.10 3.11 7.16 -52.48 -0.38 2.74 16 24 C 0.02 0.51 5.50 -17.47 -0.10 0.41 16 25 N -0.91 -25.98 13.05 55.50 0.72 -25.26 16 26 Si 0.93 22.20 29.55 -169.99 -5.02 17.17 16 27 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.25 16 29 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 30 H 0.06 0.63 5.87 -51.93 -0.31 0.33 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.08 0.65 5.37 -51.93 -0.28 0.37 16 34 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 35 H 0.04 0.44 5.55 -51.93 -0.29 0.15 16 36 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 37 H 0.04 0.56 7.98 -51.93 -0.41 0.15 16 38 H 0.08 0.54 5.15 -51.93 -0.27 0.28 16 39 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.08 0.56 7.77 -51.93 -0.40 0.15 16 44 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 45 H 0.07 0.93 7.82 -51.93 -0.41 0.52 16 46 H -0.01 -0.23 8.14 -51.93 -0.42 -0.65 16 47 H 0.09 2.22 5.81 -51.92 -0.30 1.92 16 48 H 0.07 1.25 5.23 -51.93 -0.27 0.98 16 49 H 0.04 0.74 8.12 -51.93 -0.42 0.31 16 50 H 0.08 1.44 7.93 -51.93 -0.41 1.03 16 51 H 0.39 10.16 7.90 -40.82 -0.32 9.84 16 52 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 395.65 15.07 5.96 5.96 Total: -1.00 -36.17 395.65 -7.97 -44.14 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -8.58 Total: 9.12 kcal Atomic # 6 Polarization: 13.84 SS G_CDS: 0.62 Total: 14.47 kcal Atomic # 7 Polarization: -58.67 SS G_CDS: -0.33 Total: -59.00 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.62 Total: -31.85 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -36.17 -7.97 -44.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505422692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.674 kcal (2) G-P(sol) polarization free energy of solvation -36.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.843 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds