Wall clock time and date at job start Wed Apr 1 2020 00:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47137 * 2 1 4 4 H 1.09003 * 109.47286 * 305.89817 * 3 2 1 5 5 O 1.42904 * 109.46859 * 65.89933 * 3 2 1 6 6 C 1.42899 * 113.99900 * 262.14246 * 5 3 2 7 7 C 1.50696 * 109.46935 * 185.90071 * 3 2 1 8 8 O 1.21289 * 119.99896 * 253.00668 * 7 3 2 9 9 N 1.34767 * 120.00386 * 73.00531 * 7 3 2 10 10 C 1.47430 * 125.64699 * 354.72955 * 9 7 3 11 11 C 1.54917 * 104.82940 * 204.09188 * 10 9 7 12 12 C 1.55154 * 101.58281 * 322.98505 * 11 10 9 13 13 C 1.47023 * 125.65401 * 174.41773 * 9 7 3 14 14 H 1.09005 * 109.88065 * 59.55751 * 13 9 7 15 15 C 1.52997 * 109.87995 * 298.40095 * 13 9 7 16 16 N 1.46901 * 109.47643 * 54.99572 * 15 13 9 17 17 C 1.46899 * 110.99793 * 66.04643 * 16 15 13 18 18 C 1.46900 * 110.99804 * 190.00310 * 16 15 13 19 19 C 1.50700 * 109.46767 * 169.99808 * 18 16 15 20 20 O 1.21295 * 120.00065 * 0.02562 * 19 18 16 21 21 N 1.34779 * 120.00300 * 179.97438 * 19 18 16 22 22 C 1.37093 * 120.00372 * 180.02562 * 21 19 18 23 23 H 1.08004 * 120.00183 * 0.02562 * 22 21 19 24 24 C 1.38952 * 120.00002 * 180.02562 * 22 21 19 25 25 N 1.31411 * 120.00060 * 359.97438 * 24 22 21 26 26 Si 1.86798 * 119.99831 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.47222 * 60.00012 * 26 24 22 28 28 H 1.48498 * 109.47223 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47309 * 299.99726 * 26 24 22 30 30 H 1.09003 * 109.46817 * 299.39162 * 1 2 3 31 31 H 1.09006 * 109.47459 * 59.38368 * 1 2 3 32 32 H 1.08996 * 109.47469 * 179.39335 * 1 2 3 33 33 H 1.08996 * 109.46539 * 240.00457 * 2 1 3 34 34 H 1.08994 * 109.47041 * 120.00712 * 2 1 3 35 35 H 1.09000 * 109.47445 * 65.40901 * 6 5 3 36 36 H 1.09000 * 109.46712 * 185.41128 * 6 5 3 37 37 H 1.09001 * 109.47244 * 305.40917 * 6 5 3 38 38 H 1.09000 * 110.36620 * 322.92690 * 10 9 7 39 39 H 1.08992 * 110.36737 * 85.25109 * 10 9 7 40 40 H 1.09000 * 111.00585 * 81.06300 * 11 10 9 41 41 H 1.09005 * 110.99825 * 204.87818 * 11 10 9 42 42 H 1.08997 * 110.71571 * 153.86444 * 12 11 10 43 43 H 1.08999 * 110.72311 * 276.96965 * 12 11 10 44 44 H 1.09002 * 109.46999 * 174.99897 * 15 13 9 45 45 H 1.09004 * 109.47138 * 294.99098 * 15 13 9 46 46 H 1.08990 * 109.46985 * 60.00318 * 17 16 15 47 47 H 1.09007 * 109.46571 * 180.02562 * 17 16 15 48 48 H 1.09001 * 109.46997 * 299.99899 * 17 16 15 49 49 H 1.08997 * 109.47328 * 289.99276 * 18 16 15 50 50 H 1.08997 * 109.47523 * 49.99795 * 18 16 15 51 51 H 0.97005 * 119.99435 * 0.02562 * 21 19 18 52 52 H 0.96997 * 119.99970 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.5931 1.9860 -0.8325 5 8 1.6801 2.0750 1.2299 6 6 0.4998 2.8762 1.1477 7 6 3.5399 1.4450 -0.1461 8 8 4.2414 1.7184 0.8049 9 7 4.1019 1.1434 -1.3333 10 6 3.3793 0.6885 -2.5351 11 6 4.4343 -0.0883 -3.3618 12 6 5.7117 0.7549 -3.1076 13 6 5.5363 1.2198 -1.6464 14 1 6.0966 0.5632 -0.9807 15 6 6.0262 2.6611 -1.4937 16 7 5.6991 3.1495 -0.1474 17 6 6.4526 2.4140 0.8769 18 6 5.9372 4.5951 -0.0396 19 6 5.3659 5.1027 1.2592 20 8 4.8151 4.3356 2.0204 21 7 5.4679 6.4089 1.5756 22 6 4.9487 6.8706 2.7574 23 1 4.4582 6.1876 3.4352 24 6 5.0534 8.2173 3.0832 25 7 5.6506 9.0483 2.2588 26 14 4.3453 8.8465 4.6931 27 1 5.0024 8.1505 5.8285 28 1 4.5853 10.3079 4.8020 29 1 2.8846 8.5814 4.7286 30 1 -0.3633 0.5044 0.8954 31 1 -0.3634 0.5234 -0.8844 32 1 -0.3634 -1.0275 -0.0109 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 -0.3594 2.2376 0.9425 36 1 0.3477 3.3971 2.0931 37 1 0.6106 3.6052 0.3450 38 1 2.5562 0.0305 -2.2565 39 1 3.0081 1.5430 -3.1008 40 1 4.5552 -1.1040 -2.9852 41 1 4.1739 -0.0946 -4.4203 42 1 6.6063 0.1414 -3.2148 43 1 5.7494 1.6106 -3.7817 44 1 7.1058 2.6954 -1.6403 45 1 5.5385 3.2914 -2.2374 46 1 7.5210 2.5464 0.7071 47 1 6.1911 2.7953 1.8640 48 1 6.2042 1.3542 0.8196 49 1 7.0094 4.7897 -0.0656 50 1 5.4549 5.1059 -0.8730 51 1 5.9088 7.0222 0.9669 52 1 5.7241 9.9883 2.4864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505422692.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:51:10 Heat of formation + Delta-G solvation = -94.474639 kcal Electronic energy + Delta-G solvation = -32770.293865 eV Core-core repulsion = 28577.808967 eV Total energy + Delta-G solvation = -4192.484897 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.35507 -40.16864 -39.28949 -37.68602 -37.31563 -35.76275 -34.35453 -33.21301 -32.26116 -31.35650 -29.26586 -29.09731 -27.34420 -26.60818 -26.33979 -24.38370 -22.96185 -22.34208 -21.81591 -20.85412 -19.82851 -19.79483 -18.34112 -17.85511 -17.49584 -17.29085 -16.58654 -16.53851 -16.44893 -16.15098 -15.94728 -15.48994 -15.30231 -14.98855 -14.91678 -14.67684 -14.28424 -14.08343 -13.95111 -13.72231 -13.52913 -13.38044 -13.28058 -13.20629 -13.01733 -12.75513 -12.67307 -12.53268 -12.44510 -12.40432 -12.26185 -12.21960 -12.11322 -11.97473 -11.84646 -11.63899 -11.40984 -11.37578 -10.67853 -10.14023 -9.93665 -9.86405 -9.40083 -8.77614 -8.43262 -5.90767 1.37998 1.38594 1.49989 1.95160 2.14488 2.15596 2.29795 2.87275 3.09818 3.22819 3.50035 3.64143 3.77755 3.88709 3.91796 3.94273 4.09767 4.20479 4.28674 4.33652 4.35180 4.36545 4.40478 4.48048 4.52553 4.54577 4.61867 4.64128 4.68578 4.73967 4.76724 4.80533 4.90406 4.93561 5.04575 5.10840 5.16924 5.18090 5.20814 5.38383 5.39618 5.43226 5.44086 5.68984 5.96980 6.20964 6.24365 6.43439 6.67728 6.87538 7.19265 7.63015 7.75405 8.23580 8.74735 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.012167 B = 0.003658 C = 0.002993 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2300.668041 B = 7652.765517 C = 9352.817042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.131 4.131 3 C 0.079 3.921 4 H 0.089 0.911 5 O -0.391 6.391 6 C 0.027 3.973 7 C 0.503 3.497 8 O -0.493 6.493 9 N -0.616 5.616 10 C 0.084 3.916 11 C -0.119 4.119 12 C -0.117 4.117 13 C 0.142 3.858 14 H 0.054 0.946 15 C 0.041 3.959 16 N -0.506 5.506 17 C 0.074 3.926 18 C 0.056 3.944 19 C 0.440 3.560 20 O -0.587 6.587 21 N -0.583 5.583 22 C -0.326 4.326 23 H 0.072 0.928 24 C -0.015 4.015 25 N -0.925 5.925 26 Si 0.991 3.009 27 H -0.275 1.275 28 H -0.267 1.267 29 H -0.273 1.273 30 H 0.050 0.950 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.100 0.900 34 H 0.053 0.947 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.038 0.962 38 H 0.090 0.910 39 H 0.071 0.929 40 H 0.079 0.921 41 H 0.109 0.891 42 H 0.095 0.905 43 H 0.088 0.912 44 H 0.048 0.952 45 H 0.080 0.920 46 H -0.001 1.001 47 H 0.039 0.961 48 H 0.068 0.932 49 H 0.054 0.946 50 H 0.098 0.902 51 H 0.392 0.608 52 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.113 -19.299 -18.661 27.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.169 4.169 3 C 0.018 3.982 4 H 0.107 0.893 5 O -0.309 6.309 6 C -0.069 4.069 7 C 0.290 3.710 8 O -0.364 6.364 9 N -0.354 5.354 10 C -0.038 4.038 11 C -0.157 4.157 12 C -0.155 4.155 13 C 0.038 3.962 14 H 0.072 0.928 15 C -0.088 4.088 16 N -0.230 5.230 17 C -0.073 4.073 18 C -0.075 4.075 19 C 0.226 3.774 20 O -0.470 6.470 21 N -0.223 5.223 22 C -0.456 4.456 23 H 0.090 0.910 24 C -0.214 4.214 25 N -0.567 5.567 26 Si 0.814 3.186 27 H -0.200 1.200 28 H -0.191 1.191 29 H -0.198 1.198 30 H 0.069 0.931 31 H 0.090 0.910 32 H 0.094 0.906 33 H 0.118 0.882 34 H 0.072 0.928 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.057 0.943 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.098 0.902 41 H 0.127 0.873 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.066 0.934 45 H 0.098 0.902 46 H 0.018 0.982 47 H 0.058 0.942 48 H 0.086 0.914 49 H 0.072 0.928 50 H 0.116 0.884 51 H 0.225 0.775 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.514 -19.549 -17.233 26.862 hybrid contribution 0.793 1.461 0.669 1.792 sum -5.721 -18.088 -16.564 25.185 Atomic orbital electron populations 1.21878 0.93425 1.03221 1.02313 1.22002 0.98145 0.93459 1.03286 1.22105 0.92045 0.96023 0.88035 0.89344 1.88065 1.45602 1.65449 1.31785 1.23062 0.87233 0.94283 1.02319 1.20466 0.90158 0.77623 0.82779 1.90912 1.62758 1.43653 1.39067 1.48353 1.07601 1.68547 1.10940 1.22722 0.96524 0.98900 0.85613 1.22754 0.93005 0.98547 1.01397 1.22658 0.99953 1.00974 0.91915 1.21650 0.82229 0.94358 0.97976 0.92777 1.22778 0.98999 0.96986 0.89987 1.61788 1.57497 1.00320 1.03381 1.21985 0.90751 0.98943 0.95668 1.21727 0.98896 0.91319 0.95599 1.20829 0.84318 0.82355 0.89868 1.90588 1.47123 1.55968 1.53316 1.41927 1.53027 1.07585 1.19739 1.19546 1.35058 0.93337 0.97622 0.90998 1.25977 0.97580 0.95321 1.02504 1.69674 1.44000 1.04867 1.38148 0.85032 0.78581 0.77381 0.77560 1.20007 1.19144 1.19802 0.93138 0.91016 0.90595 0.88156 0.92840 0.90575 0.90770 0.94318 0.89217 0.91056 0.90250 0.87250 0.88599 0.89336 0.93424 0.90181 0.98244 0.94247 0.91370 0.92809 0.88405 0.77455 0.91461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 9.10 71.98 0.66 -1.68 16 2 C -0.13 -2.68 5.47 30.60 0.17 -2.51 16 3 C 0.08 2.25 2.07 29.85 0.06 2.32 16 4 H 0.09 2.13 7.50 -2.39 -0.02 2.12 16 5 O -0.39 -14.66 9.74 -130.27 -1.27 -15.93 16 6 C 0.03 0.79 10.47 113.37 1.19 1.97 16 7 C 0.50 16.91 6.56 87.66 0.57 17.49 16 8 O -0.49 -22.12 10.20 17.39 0.18 -21.95 16 9 N -0.62 -14.72 3.06 -788.02 -2.41 -17.13 16 10 C 0.08 1.13 6.48 86.86 0.56 1.69 16 11 C -0.12 -0.99 7.09 31.99 0.23 -0.76 16 12 C -0.12 -1.34 6.48 31.79 0.21 -1.13 16 13 C 0.14 3.12 2.86 45.34 0.13 3.25 16 14 H 0.05 1.38 6.89 -2.38 -0.02 1.36 16 15 C 0.04 1.09 4.58 86.30 0.40 1.48 16 16 N -0.51 -19.28 2.04 -927.06 -1.89 -21.17 16 17 C 0.07 3.07 6.93 127.69 0.88 3.95 16 18 C 0.06 2.29 5.45 85.56 0.47 2.76 16 19 C 0.44 23.68 7.48 87.66 0.66 24.33 16 20 O -0.59 -36.61 13.44 -3.01 -0.04 -36.65 16 21 N -0.58 -32.95 5.29 -306.98 -1.62 -34.58 16 22 C -0.33 -20.03 9.68 84.04 0.81 -19.22 16 23 H 0.07 4.75 7.16 -2.91 -0.02 4.73 16 24 C -0.02 -0.86 5.50 84.93 0.47 -0.39 16 25 N -0.93 -52.90 13.05 21.66 0.28 -52.62 16 26 Si 0.99 45.92 29.55 68.60 2.03 47.95 16 27 H -0.27 -12.67 7.11 99.48 0.71 -11.96 16 28 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 29 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 30 H 0.05 0.93 5.87 -2.39 -0.01 0.91 16 31 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.10 1.49 5.37 -2.39 -0.01 1.47 16 34 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.08 1.62 5.55 -2.39 -0.01 1.60 16 36 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.04 1.10 7.98 -2.39 -0.02 1.08 16 38 H 0.09 0.95 5.15 -2.39 -0.01 0.94 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 41 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 42 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.09 0.87 7.77 -2.39 -0.02 0.85 16 44 H 0.05 1.14 8.12 -2.39 -0.02 1.12 16 45 H 0.08 1.95 7.82 -2.38 -0.02 1.93 16 46 H 0.00 -0.02 8.14 -2.39 -0.02 -0.04 16 47 H 0.04 2.04 5.81 -2.38 -0.01 2.03 16 48 H 0.07 2.74 5.23 -2.39 -0.01 2.73 16 49 H 0.05 2.03 8.12 -2.39 -0.02 2.01 16 50 H 0.10 3.58 7.93 -2.39 -0.02 3.56 16 51 H 0.39 21.08 7.90 -92.70 -0.73 20.34 16 52 H 0.28 14.75 8.31 -92.71 -0.77 13.98 16 Total: -1.00 -85.27 395.65 2.90 -82.37 By element: Atomic # 1 Polarization: 35.97 SS G_CDS: 0.20 Total: 36.17 kcal Atomic # 6 Polarization: 26.09 SS G_CDS: 7.45 Total: 33.54 kcal Atomic # 7 Polarization: -119.86 SS G_CDS: -5.64 Total: -125.51 kcal Atomic # 8 Polarization: -73.39 SS G_CDS: -1.13 Total: -74.52 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Total: -85.27 2.90 -82.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505422692.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.105 kcal (2) G-P(sol) polarization free energy of solvation -85.269 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds