Wall clock time and date at job start Wed Apr 1 2020 00:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47349 * 2 1 4 4 H 1.08994 * 109.46942 * 305.50188 * 3 2 1 5 5 O 1.42898 * 109.46726 * 65.49983 * 3 2 1 6 6 C 1.42903 * 113.99832 * 209.43978 * 5 3 2 7 7 C 1.50697 * 109.47293 * 185.49695 * 3 2 1 8 8 O 1.21277 * 120.00153 * 245.00311 * 7 3 2 9 9 N 1.34777 * 119.99821 * 64.99937 * 7 3 2 10 10 C 1.46924 * 120.62956 * 359.72681 * 9 7 3 11 11 C 1.53629 * 108.54324 * 126.36690 * 10 9 7 12 12 C 1.53035 * 109.24346 * 54.85494 * 11 10 9 13 13 N 1.46905 * 109.44944 * 178.49913 * 12 11 10 14 14 C 1.46900 * 110.99914 * 59.01243 * 13 12 11 15 15 C 1.46897 * 110.99964 * 295.06073 * 13 12 11 16 16 C 1.50699 * 109.47276 * 189.99941 * 15 13 12 17 17 O 1.21290 * 119.99640 * 359.97438 * 16 15 13 18 18 N 1.34772 * 119.99736 * 179.97438 * 16 15 13 19 19 C 1.37102 * 119.99760 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99824 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99783 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46818 * 60.00333 * 23 21 19 25 25 H 1.48499 * 109.47185 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47423 * 300.00187 * 23 21 19 27 27 C 1.53046 * 109.53618 * 298.50956 * 12 11 10 28 28 C 1.46928 * 120.62889 * 179.97438 * 9 7 3 29 29 H 1.08997 * 109.47247 * 294.79258 * 1 2 3 30 30 H 1.09002 * 109.47109 * 54.79563 * 1 2 3 31 31 H 1.09001 * 109.47127 * 174.78837 * 1 2 3 32 32 H 1.09005 * 109.47299 * 240.00184 * 2 1 3 33 33 H 1.09000 * 109.47267 * 120.00176 * 2 1 3 34 34 H 1.08998 * 109.47175 * 60.44920 * 6 5 3 35 35 H 1.09002 * 109.47106 * 180.44692 * 6 5 3 36 36 H 1.09001 * 109.46794 * 300.44507 * 6 5 3 37 37 H 1.08999 * 109.58039 * 246.19283 * 10 9 7 38 38 H 1.08997 * 109.59270 * 6.62016 * 10 9 7 39 39 H 1.09001 * 109.63029 * 294.85806 * 11 10 9 40 40 H 1.09007 * 109.42880 * 174.72309 * 11 10 9 41 41 H 1.08999 * 109.46402 * 58.52891 * 12 11 10 42 42 H 1.08998 * 109.47691 * 60.00027 * 14 13 12 43 43 H 1.09002 * 109.47236 * 180.02562 * 14 13 12 44 44 H 1.09010 * 109.47280 * 300.00065 * 14 13 12 45 45 H 1.09007 * 109.46889 * 310.00001 * 15 13 12 46 46 H 1.09005 * 109.47448 * 69.99450 * 15 13 12 47 47 H 0.96996 * 120.00313 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99681 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.49557 * 301.41661 * 27 12 11 50 50 H 1.08999 * 109.49772 * 181.32100 * 27 12 11 51 51 H 1.08996 * 109.58814 * 353.38079 * 28 9 7 52 52 H 1.09006 * 109.58562 * 113.66331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9839 -0.8366 5 8 1.6720 2.0778 1.2260 6 6 1.4774 3.4890 1.1137 7 6 3.5408 1.4447 -0.1361 8 8 4.2314 1.8587 0.7708 9 7 4.1157 0.9864 -1.2657 10 6 3.2926 0.4760 -2.3706 11 6 3.6852 1.2197 -3.6563 12 6 5.1928 1.0801 -3.8794 13 7 5.5676 1.7593 -5.1269 14 6 5.2086 3.1830 -5.0795 15 6 4.9564 1.1008 -6.2891 16 6 5.5505 1.6627 -7.5549 17 8 6.3992 2.5271 -7.4948 18 7 5.1388 1.2046 -8.7537 19 6 5.6789 1.7162 -9.9053 20 1 6.4346 2.4859 -9.8518 21 6 5.2540 1.2444 -11.1413 22 7 4.3341 0.3081 -11.2063 23 14 5.9894 1.9419 -12.7103 24 1 7.4549 1.7021 -12.7192 25 1 5.3713 1.2764 -13.8852 26 1 5.7263 3.4020 -12.7739 27 6 5.9446 1.7151 -2.7074 28 6 5.5775 0.9826 -1.4134 29 1 -0.3633 0.4309 0.9329 30 1 -0.3633 0.5925 -0.8397 31 1 -0.3633 -1.0234 -0.0933 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6767 3.6899 0.4019 35 1 1.2083 3.8973 2.0879 36 1 2.3987 3.9563 0.7659 37 1 3.4697 -0.5923 -2.4947 38 1 2.2391 0.6511 -2.1527 39 1 3.4275 2.2747 -3.5623 40 1 3.1506 0.7881 -4.5025 41 1 5.4534 0.0239 -3.9486 42 1 5.7299 3.6619 -4.2506 43 1 5.4966 3.6618 -6.0154 44 1 4.1323 3.2818 -4.9374 45 1 5.1488 0.0288 -6.2420 46 1 3.8808 1.2775 -6.2829 47 1 4.4603 0.5131 -8.8017 48 1 4.0378 -0.0215 -12.0692 49 1 5.6656 2.7654 -2.6224 50 1 7.0183 1.6361 -2.8782 51 1 6.0319 1.4921 -0.5637 52 1 5.9376 -0.0452 -1.4585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506956359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:27 Heat of formation + Delta-G solvation = -103.167539 kcal Electronic energy + Delta-G solvation = -31107.336873 eV Core-core repulsion = 26914.475023 eV Total energy + Delta-G solvation = -4192.861850 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -40.91075 -39.28718 -38.13543 -37.39463 -35.78411 -34.18068 -33.84121 -31.70614 -31.24935 -31.10452 -28.41031 -27.84761 -26.59640 -25.80193 -24.64465 -23.67562 -23.01986 -22.03111 -20.45772 -19.24114 -19.10621 -17.91780 -17.84908 -17.12788 -16.43372 -16.15490 -15.63908 -15.28574 -15.15590 -14.89078 -14.82803 -14.69700 -14.41846 -14.19623 -13.92189 -13.86813 -13.70526 -13.55239 -13.27139 -12.92203 -12.63307 -12.45020 -12.35050 -12.29580 -11.93431 -11.88133 -11.60441 -11.51474 -11.41552 -11.26622 -11.21364 -11.18536 -10.95833 -10.86647 -10.80522 -10.48177 -10.45871 -10.23011 -9.50807 -9.48337 -8.95073 -8.46490 -7.99394 -7.83455 -6.43786 -3.84514 2.29692 2.59010 3.18365 3.24216 3.28492 3.36960 3.87739 3.92581 4.04926 4.21618 4.37523 4.42068 4.51170 4.64905 4.70501 4.82679 4.92592 4.96107 5.00346 5.06744 5.07612 5.10560 5.18245 5.21692 5.27266 5.33003 5.38523 5.41851 5.49249 5.51162 5.60653 5.64381 5.69184 5.70954 5.80309 5.85177 5.85654 5.94441 6.03201 6.13590 6.26186 6.28545 6.54931 6.63178 7.08535 7.25592 7.37157 7.53176 7.89276 8.04381 8.59942 9.16305 9.52453 10.04521 10.73908 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.002108 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.165264 B =13280.626971 C =13848.215288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C 0.075 3.925 4 H 0.086 0.914 5 O -0.356 6.356 6 C 0.029 3.971 7 C 0.492 3.508 8 O -0.528 6.528 9 N -0.609 5.609 10 C 0.105 3.895 11 C -0.174 4.174 12 C 0.085 3.915 13 N -0.510 5.510 14 C 0.018 3.982 15 C 0.045 3.955 16 C 0.443 3.557 17 O -0.577 6.577 18 N -0.565 5.565 19 C -0.299 4.299 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.903 5.903 23 Si 0.930 3.070 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.274 1.274 27 C -0.125 4.125 28 C 0.112 3.888 29 H 0.063 0.937 30 H 0.055 0.945 31 H 0.061 0.939 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.045 0.955 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.072 0.928 40 H 0.080 0.920 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.094 0.906 44 H 0.016 0.984 45 H 0.087 0.913 46 H 0.048 0.952 47 H 0.392 0.608 48 H 0.272 0.728 49 H 0.068 0.932 50 H 0.087 0.913 51 H 0.093 0.907 52 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.327 -1.865 21.109 23.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C 0.013 3.987 4 H 0.103 0.897 5 O -0.273 6.273 6 C -0.068 4.068 7 C 0.279 3.721 8 O -0.404 6.404 9 N -0.344 5.344 10 C -0.018 4.018 11 C -0.214 4.214 12 C -0.024 4.024 13 N -0.232 5.232 14 C -0.130 4.130 15 C -0.086 4.086 16 C 0.229 3.771 17 O -0.461 6.461 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.199 1.199 25 H -0.210 1.210 26 H -0.199 1.199 27 C -0.163 4.163 28 C -0.010 4.010 29 H 0.082 0.918 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.061 0.939 35 H 0.108 0.892 36 H 0.063 0.937 37 H 0.094 0.906 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.079 0.921 43 H 0.113 0.887 44 H 0.034 0.966 45 H 0.105 0.895 46 H 0.066 0.934 47 H 0.225 0.775 48 H 0.082 0.918 49 H 0.087 0.913 50 H 0.105 0.895 51 H 0.111 0.889 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.975 -1.262 21.586 23.047 hybrid contribution -0.988 0.086 -1.198 1.555 sum -8.962 -1.176 20.389 22.302 Atomic orbital electron populations 1.21726 0.94183 1.02172 1.02567 1.21784 0.97541 0.92863 1.04060 1.22122 0.90848 0.96596 0.89129 0.89671 1.87978 1.88395 1.20841 1.30125 1.22867 0.99865 0.81178 1.02848 1.21409 0.91370 0.77434 0.81892 1.90698 1.64493 1.46149 1.39050 1.48217 1.07490 1.62854 1.15885 1.22013 0.95124 0.98530 0.86143 1.22791 0.99416 1.01780 0.97442 1.21769 0.91563 0.99067 0.90001 1.61824 1.58346 1.02793 1.00197 1.22592 0.97077 0.88837 1.04464 1.21873 0.96585 0.99290 0.90885 1.19747 0.86548 0.86574 0.84254 1.90488 1.34891 1.34178 1.86582 1.41861 1.37353 1.36445 1.04472 1.19642 1.20565 1.19903 0.82716 0.87996 1.25253 0.96674 0.96539 0.99467 1.69603 1.29816 1.28377 1.26613 0.85924 0.79151 0.78954 0.80237 1.19876 1.20989 1.19942 1.21971 1.01678 1.00060 0.92621 1.21640 0.79350 1.01149 0.98883 0.91781 0.92631 0.92020 0.89441 0.90298 0.93896 0.89150 0.93670 0.90584 0.89512 0.90904 0.90101 0.89831 0.92086 0.88710 0.96573 0.89488 0.93421 0.77534 0.91835 0.91321 0.89460 0.88879 0.91190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.76 37.16 0.36 -0.50 16 2 C -0.12 -0.87 5.17 -26.73 -0.14 -1.01 16 3 C 0.07 0.67 1.68 -27.88 -0.05 0.62 16 4 H 0.09 0.62 7.10 -51.93 -0.37 0.25 16 5 O -0.36 -3.78 9.54 -55.09 -0.53 -4.30 16 6 C 0.03 0.24 10.80 101.05 1.09 1.33 16 7 C 0.49 5.63 7.07 -10.99 -0.08 5.55 16 8 O -0.53 -8.12 15.92 -14.30 -0.23 -8.35 16 9 N -0.61 -5.85 2.97 -172.53 -0.51 -6.36 16 10 C 0.11 0.78 4.92 -3.48 -0.02 0.76 16 11 C -0.17 -1.62 4.67 -26.39 -0.12 -1.75 16 12 C 0.09 0.97 2.19 -67.67 -0.15 0.82 16 13 N -0.51 -7.88 4.49 -236.27 -1.06 -8.94 16 14 C 0.02 0.28 8.46 60.06 0.51 0.79 16 15 C 0.04 0.75 4.89 -4.98 -0.02 0.73 16 16 C 0.44 10.12 7.47 -10.99 -0.08 10.04 16 17 O -0.58 -15.19 13.91 5.55 0.08 -15.12 16 18 N -0.56 -13.94 5.29 -10.96 -0.06 -14.00 16 19 C -0.30 -8.18 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.56 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.14 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 24 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.12 -1.34 5.11 -26.63 -0.14 -1.47 16 28 C 0.11 1.11 6.43 -3.73 -0.02 1.09 16 29 H 0.06 0.42 7.97 -51.93 -0.41 0.01 16 30 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.09 0.49 5.41 -51.93 -0.28 0.20 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.04 0.27 8.09 -51.93 -0.42 -0.15 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.50 4.73 -51.93 -0.25 0.26 16 39 H 0.07 0.74 6.47 -51.93 -0.34 0.41 16 40 H 0.08 0.74 6.69 -51.92 -0.35 0.39 16 41 H 0.08 0.91 8.03 -51.93 -0.42 0.49 16 42 H 0.06 0.86 6.36 -51.93 -0.33 0.53 16 43 H 0.09 1.83 5.82 -51.93 -0.30 1.53 16 44 H 0.02 0.22 6.31 -51.92 -0.33 -0.11 16 45 H 0.09 1.31 8.00 -51.93 -0.42 0.90 16 46 H 0.05 0.72 6.90 -51.93 -0.36 0.36 16 47 H 0.39 9.21 7.90 -40.82 -0.32 8.88 16 48 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 49 H 0.07 0.80 6.50 -51.93 -0.34 0.46 16 50 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 51 H 0.09 1.04 7.01 -51.93 -0.36 0.68 16 52 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 399.72 15.07 6.02 6.02 Total: -1.00 -33.42 399.72 -8.16 -41.58 By element: Atomic # 1 Polarization: 16.43 SS G_CDS: -8.48 Total: 7.95 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: 0.90 Total: 9.16 kcal Atomic # 7 Polarization: -51.81 SS G_CDS: -0.91 Total: -52.71 kcal Atomic # 8 Polarization: -27.09 SS G_CDS: -0.68 Total: -27.77 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -33.42 -8.16 -41.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506956359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.591 kcal (2) G-P(sol) polarization free energy of solvation -33.418 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds