Wall clock time and date at job start Wed Apr 1 2020 00:50:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47349 * 2 1 4 4 H 1.08994 * 109.46942 * 305.50188 * 3 2 1 5 5 O 1.42898 * 109.46726 * 65.49983 * 3 2 1 6 6 C 1.42903 * 113.99832 * 209.43978 * 5 3 2 7 7 C 1.50697 * 109.47293 * 185.49695 * 3 2 1 8 8 O 1.21277 * 120.00153 * 245.00311 * 7 3 2 9 9 N 1.34777 * 119.99821 * 64.99937 * 7 3 2 10 10 C 1.46924 * 120.62956 * 359.72681 * 9 7 3 11 11 C 1.53629 * 108.54324 * 126.36690 * 10 9 7 12 12 C 1.53035 * 109.24346 * 54.85494 * 11 10 9 13 13 N 1.46905 * 109.44944 * 178.49913 * 12 11 10 14 14 C 1.46900 * 110.99914 * 59.01243 * 13 12 11 15 15 C 1.46897 * 110.99964 * 295.06073 * 13 12 11 16 16 C 1.50699 * 109.47276 * 189.99941 * 15 13 12 17 17 O 1.21290 * 119.99640 * 359.97438 * 16 15 13 18 18 N 1.34772 * 119.99736 * 179.97438 * 16 15 13 19 19 C 1.37102 * 119.99760 * 179.97438 * 18 16 15 20 20 H 1.08000 * 119.99824 * 0.02562 * 19 18 16 21 21 C 1.38952 * 120.00125 * 180.02562 * 19 18 16 22 22 N 1.31416 * 119.99783 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00016 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.46818 * 60.00333 * 23 21 19 25 25 H 1.48499 * 109.47185 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47423 * 300.00187 * 23 21 19 27 27 C 1.53046 * 109.53618 * 298.50956 * 12 11 10 28 28 C 1.46928 * 120.62889 * 179.97438 * 9 7 3 29 29 H 1.08997 * 109.47247 * 294.79258 * 1 2 3 30 30 H 1.09002 * 109.47109 * 54.79563 * 1 2 3 31 31 H 1.09001 * 109.47127 * 174.78837 * 1 2 3 32 32 H 1.09005 * 109.47299 * 240.00184 * 2 1 3 33 33 H 1.09000 * 109.47267 * 120.00176 * 2 1 3 34 34 H 1.08998 * 109.47175 * 60.44920 * 6 5 3 35 35 H 1.09002 * 109.47106 * 180.44692 * 6 5 3 36 36 H 1.09001 * 109.46794 * 300.44507 * 6 5 3 37 37 H 1.08999 * 109.58039 * 246.19283 * 10 9 7 38 38 H 1.08997 * 109.59270 * 6.62016 * 10 9 7 39 39 H 1.09001 * 109.63029 * 294.85806 * 11 10 9 40 40 H 1.09007 * 109.42880 * 174.72309 * 11 10 9 41 41 H 1.08999 * 109.46402 * 58.52891 * 12 11 10 42 42 H 1.08998 * 109.47691 * 60.00027 * 14 13 12 43 43 H 1.09002 * 109.47236 * 180.02562 * 14 13 12 44 44 H 1.09010 * 109.47280 * 300.00065 * 14 13 12 45 45 H 1.09007 * 109.46889 * 310.00001 * 15 13 12 46 46 H 1.09005 * 109.47448 * 69.99450 * 15 13 12 47 47 H 0.96996 * 120.00313 * 359.97438 * 18 16 15 48 48 H 0.97001 * 119.99681 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.49557 * 301.41661 * 27 12 11 50 50 H 1.08999 * 109.49772 * 181.32100 * 27 12 11 51 51 H 1.08996 * 109.58814 * 353.38079 * 28 9 7 52 52 H 1.09006 * 109.58562 * 113.66331 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5985 1.9839 -0.8366 5 8 1.6720 2.0778 1.2260 6 6 1.4774 3.4890 1.1137 7 6 3.5408 1.4447 -0.1361 8 8 4.2314 1.8587 0.7708 9 7 4.1157 0.9864 -1.2657 10 6 3.2926 0.4760 -2.3706 11 6 3.6852 1.2197 -3.6563 12 6 5.1928 1.0801 -3.8794 13 7 5.5676 1.7593 -5.1269 14 6 5.2086 3.1830 -5.0795 15 6 4.9564 1.1008 -6.2891 16 6 5.5505 1.6627 -7.5549 17 8 6.3992 2.5271 -7.4948 18 7 5.1388 1.2046 -8.7537 19 6 5.6789 1.7162 -9.9053 20 1 6.4346 2.4859 -9.8518 21 6 5.2540 1.2444 -11.1413 22 7 4.3341 0.3081 -11.2063 23 14 5.9894 1.9419 -12.7103 24 1 7.4549 1.7021 -12.7192 25 1 5.3713 1.2764 -13.8852 26 1 5.7263 3.4020 -12.7739 27 6 5.9446 1.7151 -2.7074 28 6 5.5775 0.9826 -1.4134 29 1 -0.3633 0.4309 0.9329 30 1 -0.3633 0.5925 -0.8397 31 1 -0.3633 -1.0234 -0.0933 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 0.6767 3.6899 0.4019 35 1 1.2083 3.8973 2.0879 36 1 2.3987 3.9563 0.7659 37 1 3.4697 -0.5923 -2.4947 38 1 2.2391 0.6511 -2.1527 39 1 3.4275 2.2747 -3.5623 40 1 3.1506 0.7881 -4.5025 41 1 5.4534 0.0239 -3.9486 42 1 5.7299 3.6619 -4.2506 43 1 5.4966 3.6618 -6.0154 44 1 4.1323 3.2818 -4.9374 45 1 5.1488 0.0288 -6.2420 46 1 3.8808 1.2775 -6.2829 47 1 4.4603 0.5131 -8.8017 48 1 4.0378 -0.0215 -12.0692 49 1 5.6656 2.7654 -2.6224 50 1 7.0183 1.6361 -2.8782 51 1 6.0319 1.4921 -0.5637 52 1 5.9376 -0.0452 -1.4585 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506956359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:50:26 Heat of formation + Delta-G solvation = -127.123151 kcal Electronic energy + Delta-G solvation = -31108.375666 eV Core-core repulsion = 26914.475023 eV Total energy + Delta-G solvation = -4193.900643 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.73294 -40.54510 -39.42163 -38.37179 -36.86923 -35.84261 -34.74697 -33.26093 -32.54444 -31.93860 -29.48351 -28.83452 -27.41011 -27.02356 -26.09969 -24.47562 -24.00738 -22.71552 -21.39903 -20.83566 -20.05342 -19.79470 -18.68584 -17.87896 -17.84380 -17.01831 -16.63089 -16.54333 -16.40863 -16.19391 -15.83489 -15.67468 -15.61006 -15.14636 -15.13458 -15.02855 -14.62652 -14.52251 -14.27950 -13.92252 -13.72491 -13.47635 -13.38698 -13.17661 -13.04515 -12.93767 -12.81922 -12.70291 -12.48234 -12.42306 -12.36165 -12.14100 -12.11259 -11.97422 -11.82329 -11.69544 -11.54612 -11.47448 -11.35890 -10.31304 -10.23855 -9.97037 -9.75581 -9.07540 -8.44340 -5.92264 1.40477 1.42517 1.46774 1.52778 1.84713 2.09800 2.29813 2.73311 2.79232 3.22946 3.34508 3.44663 3.71694 3.82363 3.85929 3.88566 3.98168 4.10694 4.24895 4.30290 4.33228 4.35147 4.39832 4.44559 4.46894 4.53528 4.55261 4.56913 4.60326 4.68392 4.77087 4.78282 4.78978 4.86946 4.88974 4.98466 5.09252 5.09676 5.17111 5.20987 5.32267 5.43320 5.43633 5.49478 5.93021 5.97276 6.11098 6.26876 6.33332 6.64474 7.07267 7.16436 7.60788 8.17435 8.72737 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.020810 B = 0.002108 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1345.165264 B =13280.626971 C =13848.215288 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.075 3.925 4 H 0.107 0.893 5 O -0.379 6.379 6 C 0.026 3.974 7 C 0.486 3.514 8 O -0.578 6.578 9 N -0.604 5.604 10 C 0.105 3.895 11 C -0.169 4.169 12 C 0.087 3.913 13 N -0.530 5.530 14 C 0.027 3.973 15 C 0.059 3.941 16 C 0.440 3.560 17 O -0.617 6.617 18 N -0.575 5.575 19 C -0.331 4.331 20 H 0.076 0.924 21 C -0.012 4.012 22 N -0.920 5.920 23 Si 0.989 3.011 24 H -0.274 1.274 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.117 4.117 28 C 0.117 3.883 29 H 0.051 0.949 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.107 0.893 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.028 0.972 37 H 0.100 0.900 38 H 0.109 0.891 39 H 0.063 0.937 40 H 0.092 0.908 41 H 0.097 0.903 42 H 0.069 0.931 43 H 0.051 0.949 44 H 0.034 0.966 45 H 0.111 0.889 46 H 0.073 0.927 47 H 0.397 0.603 48 H 0.277 0.723 49 H 0.055 0.945 50 H 0.080 0.920 51 H 0.074 0.926 52 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.172 -3.348 20.987 24.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.158 4.158 3 C 0.013 3.987 4 H 0.125 0.875 5 O -0.296 6.296 6 C -0.071 4.071 7 C 0.275 3.725 8 O -0.457 6.457 9 N -0.338 5.338 10 C -0.017 4.017 11 C -0.208 4.208 12 C -0.021 4.021 13 N -0.253 5.253 14 C -0.121 4.121 15 C -0.071 4.071 16 C 0.227 3.773 17 O -0.503 6.503 18 N -0.213 5.213 19 C -0.461 4.461 20 H 0.094 0.906 21 C -0.212 4.212 22 N -0.561 5.561 23 Si 0.813 3.187 24 H -0.199 1.199 25 H -0.195 1.195 26 H -0.198 1.198 27 C -0.155 4.155 28 C -0.006 4.006 29 H 0.070 0.930 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.125 0.875 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.118 0.882 36 H 0.047 0.953 37 H 0.118 0.882 38 H 0.127 0.873 39 H 0.082 0.918 40 H 0.110 0.890 41 H 0.115 0.885 42 H 0.087 0.913 43 H 0.070 0.930 44 H 0.052 0.948 45 H 0.129 0.871 46 H 0.090 0.910 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.074 0.926 50 H 0.098 0.902 51 H 0.093 0.907 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -9.849 -2.773 21.458 23.773 hybrid contribution -0.370 0.577 -1.100 1.296 sum -10.219 -2.196 20.358 22.884 Atomic orbital electron populations 1.21709 0.93112 1.03045 1.02461 1.21820 0.98362 0.91394 1.04270 1.22321 0.89015 0.98008 0.89329 0.87532 1.87953 1.88344 1.21890 1.31444 1.22982 0.99765 0.80209 1.04096 1.21982 0.92426 0.76520 0.81593 1.90673 1.65725 1.48459 1.40891 1.48299 1.07510 1.62011 1.16029 1.22236 0.95911 0.99410 0.84142 1.22721 0.97533 1.01711 0.98865 1.21845 0.93260 0.99175 0.87841 1.61738 1.59351 1.02776 1.01458 1.22398 0.98239 0.89089 1.02371 1.21733 0.97330 1.00038 0.88047 1.20895 0.85430 0.85345 0.85594 1.90472 1.36598 1.35797 1.87459 1.41924 1.37819 1.36923 1.04607 1.19578 1.21333 1.20607 0.84545 0.90559 1.25972 0.96835 0.96632 1.01755 1.69656 1.30156 1.28706 1.27556 0.85045 0.78339 0.78317 0.76986 1.19887 1.19499 1.19844 1.21867 1.01260 0.99416 0.92980 1.21557 0.79836 1.01753 0.97486 0.92981 0.91437 0.90889 0.87526 0.91778 0.91646 0.88216 0.95345 0.88219 0.87270 0.91801 0.88984 0.88455 0.91267 0.93015 0.94752 0.87056 0.90956 0.76957 0.91350 0.92620 0.90183 0.90704 0.89368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.76 71.98 0.70 -0.56 16 2 C -0.12 -1.36 5.17 30.59 0.16 -1.20 16 3 C 0.07 1.18 1.68 29.85 0.05 1.23 16 4 H 0.11 1.21 7.10 -2.39 -0.02 1.19 16 5 O -0.38 -7.69 9.54 -129.99 -1.24 -8.93 16 6 C 0.03 0.40 10.80 113.37 1.22 1.62 16 7 C 0.49 10.58 7.07 87.66 0.62 11.20 16 8 O -0.58 -18.04 15.92 15.97 0.25 -17.79 16 9 N -0.60 -10.28 2.97 -818.14 -2.43 -12.71 16 10 C 0.11 1.13 4.92 86.51 0.43 1.55 16 11 C -0.17 -2.53 4.67 30.82 0.14 -2.38 16 12 C 0.09 1.74 2.19 44.94 0.10 1.84 16 13 N -0.53 -15.61 4.49 -901.42 -4.05 -19.65 16 14 C 0.03 0.83 8.46 127.69 1.08 1.91 16 15 C 0.06 1.87 4.89 85.56 0.42 2.28 16 16 C 0.44 20.15 7.47 87.66 0.66 20.80 16 17 O -0.62 -33.41 13.91 -3.06 -0.04 -33.45 16 18 N -0.57 -28.59 5.29 -306.99 -1.62 -30.21 16 19 C -0.33 -18.47 9.68 84.04 0.81 -17.66 16 20 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 21 C -0.01 -0.64 5.50 84.93 0.47 -0.17 16 22 N -0.92 -48.56 13.05 21.66 0.28 -48.27 16 23 Si 0.99 42.42 29.55 68.60 2.03 44.45 16 24 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 25 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 27 C -0.12 -2.36 5.11 30.66 0.16 -2.20 16 28 C 0.12 2.14 6.43 86.35 0.55 2.70 16 29 H 0.05 0.59 7.97 -2.39 -0.02 0.57 16 30 H 0.07 0.44 8.14 -2.39 -0.02 0.42 16 31 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.11 0.75 5.41 -2.38 -0.01 0.74 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.69 8.09 -2.39 -0.02 0.68 16 35 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.11 0.74 4.73 -2.39 -0.01 0.73 16 39 H 0.06 1.11 6.47 -2.39 -0.02 1.09 16 40 H 0.09 1.24 6.69 -2.38 -0.02 1.23 16 41 H 0.10 1.74 8.03 -2.39 -0.02 1.72 16 42 H 0.07 1.96 6.36 -2.39 -0.02 1.94 16 43 H 0.05 2.05 5.82 -2.39 -0.01 2.04 16 44 H 0.03 0.91 6.31 -2.38 -0.02 0.89 16 45 H 0.11 2.99 8.00 -2.38 -0.02 2.98 16 46 H 0.07 1.95 6.90 -2.38 -0.02 1.93 16 47 H 0.40 18.52 7.90 -92.71 -0.73 17.79 16 48 H 0.28 13.75 8.31 -92.71 -0.77 12.98 16 49 H 0.06 1.27 6.50 -2.38 -0.02 1.25 16 50 H 0.08 1.73 8.14 -2.39 -0.02 1.72 16 51 H 0.07 1.69 7.01 -2.39 -0.02 1.68 16 52 H 0.09 1.32 8.14 -2.38 -0.02 1.31 16 Total: -1.00 -75.40 399.72 0.95 -74.44 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: 0.20 Total: 31.16 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 7.57 Total: 20.96 kcal Atomic # 7 Polarization: -103.04 SS G_CDS: -7.81 Total: -110.85 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -1.03 Total: -60.16 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.45 kcal Total: -75.40 0.95 -74.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506956359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.680 kcal (2) G-P(sol) polarization free energy of solvation -75.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds