Wall clock time and date at job start Wed Apr 1 2020 01:06:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47623 * 2 1 4 4 N 1.46506 * 109.47256 * 239.99718 * 2 1 3 5 5 C 1.34415 * 124.34522 * 59.70165 * 4 2 1 6 6 O 1.21284 * 124.94619 * 359.57300 * 5 4 2 7 7 C 1.51286 * 110.11148 * 179.43678 * 5 4 2 8 8 C 1.54628 * 104.25745 * 344.14666 * 7 5 4 9 9 C 1.46762 * 124.35118 * 240.00414 * 4 2 1 10 10 H 1.09002 * 110.24646 * 78.01742 * 9 4 2 11 11 C 1.50703 * 110.24498 * 316.01933 * 9 4 2 12 12 O 1.21288 * 119.99889 * 359.97438 * 11 9 4 13 13 N 1.34780 * 119.99790 * 180.02562 * 11 9 4 14 14 C 1.46492 * 120.00102 * 359.97438 * 13 11 9 15 15 C 1.46500 * 119.99768 * 179.97438 * 13 11 9 16 16 C 1.53000 * 109.47243 * 89.99606 * 15 13 11 17 17 H 1.08996 * 109.46965 * 60.00031 * 16 15 13 18 18 O 1.42899 * 109.47021 * 299.99852 * 16 15 13 19 19 C 1.53002 * 109.47033 * 180.02562 * 16 15 13 20 20 N 1.46499 * 109.46792 * 184.99894 * 19 16 15 21 21 C 1.46495 * 120.00336 * 269.99600 * 20 19 16 22 22 C 1.36940 * 120.00018 * 90.00384 * 20 19 16 23 23 H 1.07999 * 119.99897 * 22.67511 * 22 20 19 24 24 C 1.38810 * 120.00093 * 202.68145 * 22 20 19 25 25 N 1.31619 * 120.00200 * 11.48177 * 24 22 20 26 26 Si 1.86803 * 119.99949 * 191.49078 * 24 22 20 27 27 H 1.48499 * 109.47200 * 59.99750 * 26 24 22 28 28 H 1.48498 * 109.46953 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46860 * 299.99542 * 26 24 22 30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46936 * 300.00251 * 1 2 3 32 32 H 1.09003 * 109.46394 * 60.00141 * 1 2 3 33 33 H 1.09002 * 109.46736 * 120.00280 * 2 1 3 34 34 H 1.09002 * 109.46797 * 300.00122 * 3 2 1 35 35 H 1.09001 * 109.46684 * 59.99480 * 3 2 1 36 36 H 1.08998 * 109.47441 * 180.02562 * 3 2 1 37 37 H 1.09000 * 110.64474 * 225.35997 * 7 5 4 38 38 H 1.09001 * 110.38440 * 102.80618 * 7 5 4 39 39 H 1.09000 * 110.97213 * 266.45986 * 8 7 5 40 40 H 1.09007 * 110.96963 * 142.69752 * 8 7 5 41 41 H 1.08995 * 109.47393 * 90.00307 * 14 13 11 42 42 H 1.09005 * 109.47049 * 210.00238 * 14 13 11 43 43 H 1.09005 * 109.47429 * 330.00299 * 14 13 11 44 44 H 1.08993 * 109.47005 * 209.99730 * 15 13 11 45 45 H 1.09005 * 109.47323 * 329.99536 * 15 13 11 46 46 H 0.96701 * 114.00127 * 299.99857 * 18 16 15 47 47 H 1.09003 * 109.46908 * 304.99741 * 19 16 15 48 48 H 1.08997 * 109.47313 * 65.00254 * 19 16 15 49 49 H 1.08999 * 109.46919 * 93.93533 * 21 20 19 50 50 H 1.08997 * 109.47399 * 213.93845 * 21 20 19 51 51 H 1.09004 * 109.46978 * 333.93525 * 21 20 19 52 52 H 0.96999 * 120.00270 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.7433 -0.3117 -2.4561 6 8 1.0547 0.6390 -2.7610 7 6 2.4204 -1.2417 -3.4386 8 6 3.4724 -1.9924 -2.5896 9 6 2.8656 -1.8889 -1.1727 10 1 2.2645 -2.7716 -0.9544 11 6 3.9589 -1.7345 -0.1470 12 8 4.0339 -0.7185 0.5111 13 7 4.8539 -2.7251 0.0381 14 6 4.7636 -3.9520 -0.7572 15 6 5.9170 -2.5748 1.0348 16 6 5.4309 -3.1088 2.3836 17 1 5.1717 -4.1629 2.2850 18 8 4.2795 -2.3722 2.8005 19 6 6.5410 -2.9513 3.4246 20 7 6.1204 -3.5697 4.6843 21 6 5.4046 -2.7766 5.6866 22 6 6.3966 -4.8892 4.9250 23 1 7.2061 -5.3757 4.4012 24 6 5.6360 -5.6014 5.8421 25 7 4.5187 -5.0874 6.3108 26 14 6.1983 -7.2895 6.4112 27 1 7.5289 -7.1752 7.0605 28 1 5.2185 -7.8356 7.3842 29 1 6.2948 -8.1994 5.2415 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 2.9057 -0.6745 -4.2329 38 1 1.6982 -1.9423 -3.8578 39 1 4.4402 -1.4932 -2.6368 40 1 3.5562 -3.0330 -2.9030 41 1 5.3512 -3.8386 -1.6682 42 1 5.1502 -4.7902 -0.1774 43 1 3.7220 -4.1403 -1.0179 44 1 6.7952 -3.1367 0.7168 45 1 6.1763 -1.5207 1.1334 46 1 4.4371 -1.4243 2.9090 47 1 7.4476 -3.4384 3.0655 48 1 6.7381 -1.8918 3.5881 49 1 4.3305 -2.9013 5.5491 50 1 5.6847 -3.1138 6.6846 51 1 5.6659 -1.7246 5.5719 52 1 3.9874 -5.5849 6.9520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001507683424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:02 Heat of formation + Delta-G solvation = -82.410842 kcal Electronic energy + Delta-G solvation = -32297.610905 eV Core-core repulsion = 28105.649134 eV Total energy + Delta-G solvation = -4191.961772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.27624 -39.42803 -37.31455 -36.22831 -35.70434 -34.90061 -34.42440 -31.36604 -30.25753 -30.08996 -28.27183 -27.13522 -27.01712 -25.82077 -25.23730 -22.92516 -22.47637 -21.86587 -20.51605 -19.76504 -18.69740 -17.72995 -16.98335 -16.77424 -16.24044 -15.89593 -15.77281 -15.30088 -14.76871 -14.71530 -14.47313 -14.25930 -14.02028 -13.82666 -13.72707 -13.51246 -13.39313 -13.22881 -12.98724 -12.80704 -12.72280 -12.34042 -12.16409 -12.01285 -11.88287 -11.74511 -11.53789 -11.43747 -11.21535 -11.10421 -11.00859 -10.85846 -10.71571 -10.42901 -10.27791 -10.01537 -10.00395 -9.92345 -9.62871 -9.59568 -8.78475 -8.59901 -8.39901 -6.67903 -5.69830 -3.16285 2.39757 2.53772 2.67002 3.08251 3.36483 3.42561 3.43412 3.98042 4.04204 4.28262 4.49031 4.57417 4.65918 4.93190 4.98675 5.03483 5.05642 5.13094 5.24114 5.25313 5.31338 5.34981 5.41890 5.46830 5.49227 5.54509 5.58076 5.68726 5.73858 5.75084 5.84831 5.86566 5.99179 6.02585 6.09294 6.15602 6.36832 6.48470 6.55770 6.57060 6.80297 6.85320 7.03031 7.33522 7.45013 7.77181 7.91186 8.02560 8.15931 8.40620 8.44664 9.25277 9.88886 10.38629 11.34106 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.002816 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.527375 B = 9939.079963 C =10495.019090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.159 3.841 3 C -0.157 4.157 4 N -0.591 5.591 5 C 0.519 3.481 6 O -0.529 6.529 7 C -0.156 4.156 8 C -0.122 4.122 9 C 0.112 3.888 10 H 0.105 0.895 11 C 0.514 3.486 12 O -0.521 6.521 13 N -0.602 5.602 14 C 0.073 3.927 15 C 0.081 3.919 16 C 0.072 3.928 17 H 0.094 0.906 18 O -0.542 6.542 19 C 0.126 3.874 20 N -0.592 5.592 21 C 0.170 3.830 22 C -0.261 4.261 23 H 0.066 0.934 24 C 0.004 3.996 25 N -0.901 5.901 26 Si 0.903 3.097 27 H -0.285 1.285 28 H -0.291 1.291 29 H -0.284 1.284 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.059 0.941 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.103 0.897 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.100 0.900 41 H 0.057 0.943 42 H 0.077 0.923 43 H 0.069 0.931 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.361 0.639 47 H 0.049 0.951 48 H 0.039 0.961 49 H 0.034 0.966 50 H 0.040 0.960 51 H -0.008 1.008 52 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.652 5.465 -19.647 20.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.057 3.943 3 C -0.215 4.215 4 N -0.324 5.324 5 C 0.306 3.694 6 O -0.406 6.406 7 C -0.196 4.196 8 C -0.160 4.160 9 C 0.004 3.996 10 H 0.122 0.878 11 C 0.300 3.700 12 O -0.396 6.396 13 N -0.335 5.335 14 C -0.070 4.070 15 C -0.042 4.042 16 C 0.009 3.991 17 H 0.112 0.888 18 O -0.346 6.346 19 C -0.003 4.003 20 N -0.314 5.314 21 C 0.025 3.975 22 C -0.390 4.390 23 H 0.084 0.916 24 C -0.195 4.195 25 N -0.545 5.545 26 Si 0.733 3.267 27 H -0.211 1.211 28 H -0.216 1.216 29 H -0.210 1.210 30 H 0.072 0.928 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.118 0.882 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.105 0.895 40 H 0.118 0.882 41 H 0.076 0.924 42 H 0.096 0.904 43 H 0.088 0.912 44 H 0.099 0.901 45 H 0.100 0.900 46 H 0.207 0.793 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.053 0.947 50 H 0.058 0.942 51 H 0.010 0.990 52 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -2.399 5.895 -19.217 20.244 hybrid contribution 0.541 -0.842 0.391 1.075 sum -1.858 5.053 -18.826 19.581 Atomic orbital electron populations 1.22229 0.95374 1.02035 1.03019 1.20994 0.92974 0.93679 0.86630 1.22057 1.02357 0.95102 1.01940 1.48193 1.49508 1.27951 1.06780 1.20761 0.80413 0.84603 0.83599 1.90696 1.39593 1.29023 1.81274 1.22391 0.99201 0.99441 0.98573 1.22683 0.99123 1.02781 0.91458 1.21620 0.91935 0.90086 0.95948 0.87762 1.20364 0.82523 0.83395 0.83680 1.90666 1.72730 1.28690 1.47564 1.47683 1.30185 1.16893 1.38744 1.21931 1.02296 0.87200 0.95589 1.22480 0.89189 1.02863 0.89685 1.23231 0.89065 0.96394 0.90460 0.88781 1.86616 1.35003 1.22673 1.90258 1.21441 0.94930 0.96331 0.87636 1.43822 1.66776 1.08367 1.12392 1.20759 0.96386 0.88411 0.91921 1.19131 1.10558 0.86726 1.22614 0.91611 1.25053 0.95497 0.97825 1.01100 1.70083 1.13248 1.37850 1.33308 0.86368 0.77729 0.84218 0.78346 1.21118 1.21648 1.21025 0.92801 0.91413 0.91386 0.88165 0.92197 0.92008 0.91456 0.87838 0.87596 0.89514 0.88190 0.92407 0.90401 0.91196 0.90088 0.90046 0.79288 0.93318 0.94222 0.94743 0.94173 0.98959 0.93751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.01 9.19 37.16 0.34 -1.67 16 2 C 0.16 2.05 2.38 -67.93 -0.16 1.89 16 3 C -0.16 -2.06 9.03 37.16 0.34 -1.73 16 4 N -0.59 -6.95 2.58 -158.67 -0.41 -7.36 16 5 C 0.52 6.19 7.41 -10.86 -0.08 6.11 16 6 O -0.53 -8.10 15.12 5.55 0.08 -8.02 16 7 C -0.16 -1.13 6.86 -26.74 -0.18 -1.31 16 8 C -0.12 -0.77 5.47 -25.10 -0.14 -0.91 16 9 C 0.11 1.08 2.79 -68.16 -0.19 0.89 16 10 H 0.10 0.89 7.32 -51.93 -0.38 0.51 16 11 C 0.51 6.34 6.24 -10.98 -0.07 6.27 16 12 O -0.52 -7.91 11.31 -3.17 -0.04 -7.94 16 13 N -0.60 -6.76 2.83 -181.57 -0.51 -7.27 16 14 C 0.07 0.56 9.02 59.84 0.54 1.10 16 15 C 0.08 1.04 5.15 -4.04 -0.02 1.02 16 16 C 0.07 1.25 3.48 -26.73 -0.09 1.16 16 17 H 0.09 1.90 8.14 -51.93 -0.42 1.48 16 18 O -0.54 -10.56 11.70 -43.95 -0.51 -11.08 16 19 C 0.13 2.42 5.37 -4.04 -0.02 2.40 16 20 N -0.59 -14.68 2.89 -181.12 -0.52 -15.20 16 21 C 0.17 4.27 8.61 59.84 0.52 4.79 16 22 C -0.26 -7.04 9.67 -15.06 -0.15 -7.18 16 23 H 0.07 1.71 7.85 -52.49 -0.41 1.30 16 24 C 0.00 0.12 5.12 -17.43 -0.09 0.03 16 25 N -0.90 -26.43 10.61 55.49 0.59 -25.84 16 26 Si 0.90 21.58 29.57 -169.99 -5.03 16.55 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 29 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 30 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.07 0.89 6.75 -51.93 -0.35 0.54 16 33 H 0.10 1.46 6.57 -51.93 -0.34 1.12 16 34 H 0.06 0.84 6.82 -51.93 -0.35 0.49 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.97 7.04 -51.93 -0.37 0.61 16 37 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.11 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.09 0.58 7.91 -51.93 -0.41 0.17 16 40 H 0.10 0.34 7.16 -51.93 -0.37 -0.03 16 41 H 0.06 0.30 7.91 -51.93 -0.41 -0.11 16 42 H 0.08 0.65 8.07 -51.93 -0.42 0.23 16 43 H 0.07 0.43 5.97 -51.93 -0.31 0.12 16 44 H 0.08 0.87 8.07 -51.93 -0.42 0.46 16 45 H 0.08 1.09 7.42 -51.93 -0.39 0.70 16 46 H 0.36 6.47 8.45 45.56 0.38 6.85 16 47 H 0.05 0.88 8.03 -51.93 -0.42 0.46 16 48 H 0.04 0.71 7.86 -51.93 -0.41 0.30 16 49 H 0.03 0.96 7.43 -51.93 -0.39 0.57 16 50 H 0.04 1.08 7.20 -51.93 -0.37 0.71 16 51 H -0.01 -0.18 7.85 -51.93 -0.41 -0.59 16 52 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 402.57 15.07 6.07 6.07 Total: -1.00 -34.51 402.57 -7.95 -42.46 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.21 Total: 4.79 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 0.54 Total: 12.85 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: -0.86 Total: -55.68 kcal Atomic # 8 Polarization: -26.57 SS G_CDS: -0.47 Total: -27.04 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.03 Total: 16.55 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.51 -7.95 -42.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507683424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.949 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds