Wall clock time and date at job start Wed Apr 1 2020 01:06:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47623 * 2 1 4 4 N 1.46506 * 109.47256 * 239.99718 * 2 1 3 5 5 C 1.34415 * 124.34522 * 59.70165 * 4 2 1 6 6 O 1.21284 * 124.94619 * 359.57300 * 5 4 2 7 7 C 1.51286 * 110.11148 * 179.43678 * 5 4 2 8 8 C 1.54628 * 104.25745 * 344.14666 * 7 5 4 9 9 C 1.46762 * 124.35118 * 240.00414 * 4 2 1 10 10 H 1.09002 * 110.24646 * 78.01742 * 9 4 2 11 11 C 1.50703 * 110.24498 * 316.01933 * 9 4 2 12 12 O 1.21288 * 119.99889 * 359.97438 * 11 9 4 13 13 N 1.34780 * 119.99790 * 180.02562 * 11 9 4 14 14 C 1.46492 * 120.00102 * 359.97438 * 13 11 9 15 15 C 1.46500 * 119.99768 * 179.97438 * 13 11 9 16 16 C 1.53000 * 109.47243 * 89.99606 * 15 13 11 17 17 H 1.08996 * 109.46965 * 60.00031 * 16 15 13 18 18 O 1.42899 * 109.47021 * 299.99852 * 16 15 13 19 19 C 1.53002 * 109.47033 * 180.02562 * 16 15 13 20 20 N 1.46499 * 109.46792 * 184.99894 * 19 16 15 21 21 C 1.46495 * 120.00336 * 269.99600 * 20 19 16 22 22 C 1.36940 * 120.00018 * 90.00384 * 20 19 16 23 23 H 1.07999 * 119.99897 * 22.67511 * 22 20 19 24 24 C 1.38810 * 120.00093 * 202.68145 * 22 20 19 25 25 N 1.31619 * 120.00200 * 11.48177 * 24 22 20 26 26 Si 1.86803 * 119.99949 * 191.49078 * 24 22 20 27 27 H 1.48499 * 109.47200 * 59.99750 * 26 24 22 28 28 H 1.48498 * 109.46953 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.46860 * 299.99542 * 26 24 22 30 30 H 1.08998 * 109.47234 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46936 * 300.00251 * 1 2 3 32 32 H 1.09003 * 109.46394 * 60.00141 * 1 2 3 33 33 H 1.09002 * 109.46736 * 120.00280 * 2 1 3 34 34 H 1.09002 * 109.46797 * 300.00122 * 3 2 1 35 35 H 1.09001 * 109.46684 * 59.99480 * 3 2 1 36 36 H 1.08998 * 109.47441 * 180.02562 * 3 2 1 37 37 H 1.09000 * 110.64474 * 225.35997 * 7 5 4 38 38 H 1.09001 * 110.38440 * 102.80618 * 7 5 4 39 39 H 1.09000 * 110.97213 * 266.45986 * 8 7 5 40 40 H 1.09007 * 110.96963 * 142.69752 * 8 7 5 41 41 H 1.08995 * 109.47393 * 90.00307 * 14 13 11 42 42 H 1.09005 * 109.47049 * 210.00238 * 14 13 11 43 43 H 1.09005 * 109.47429 * 330.00299 * 14 13 11 44 44 H 1.08993 * 109.47005 * 209.99730 * 15 13 11 45 45 H 1.09005 * 109.47323 * 329.99536 * 15 13 11 46 46 H 0.96701 * 114.00127 * 299.99857 * 18 16 15 47 47 H 1.09003 * 109.46908 * 304.99741 * 19 16 15 48 48 H 1.08997 * 109.47313 * 65.00254 * 19 16 15 49 49 H 1.08999 * 109.46919 * 93.93533 * 21 20 19 50 50 H 1.08997 * 109.47399 * 213.93845 * 21 20 19 51 51 H 1.09004 * 109.46978 * 333.93525 * 21 20 19 52 52 H 0.96999 * 120.00270 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0402 1.4424 0.0000 4 7 2.0184 -0.6907 -1.1962 5 6 1.7433 -0.3117 -2.4561 6 8 1.0547 0.6390 -2.7610 7 6 2.4204 -1.2417 -3.4386 8 6 3.4724 -1.9924 -2.5896 9 6 2.8656 -1.8889 -1.1727 10 1 2.2645 -2.7716 -0.9544 11 6 3.9589 -1.7345 -0.1470 12 8 4.0339 -0.7185 0.5111 13 7 4.8539 -2.7251 0.0381 14 6 4.7636 -3.9520 -0.7572 15 6 5.9170 -2.5748 1.0348 16 6 5.4309 -3.1088 2.3836 17 1 5.1717 -4.1629 2.2850 18 8 4.2795 -2.3722 2.8005 19 6 6.5410 -2.9513 3.4246 20 7 6.1204 -3.5697 4.6843 21 6 5.4046 -2.7766 5.6866 22 6 6.3966 -4.8892 4.9250 23 1 7.2061 -5.3757 4.4012 24 6 5.6360 -5.6014 5.8421 25 7 4.5187 -5.0874 6.3108 26 14 6.1983 -7.2895 6.4112 27 1 7.5289 -7.1752 7.0605 28 1 5.2185 -7.8356 7.3842 29 1 6.2948 -8.1994 5.2415 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 1.8933 -0.5139 0.8900 34 1 1.6768 1.9563 -0.8900 35 1 1.6767 1.9563 0.8900 36 1 3.1301 1.4424 -0.0005 37 1 2.9057 -0.6745 -4.2329 38 1 1.6982 -1.9423 -3.8578 39 1 4.4402 -1.4932 -2.6368 40 1 3.5562 -3.0330 -2.9030 41 1 5.3512 -3.8386 -1.6682 42 1 5.1502 -4.7902 -0.1774 43 1 3.7220 -4.1403 -1.0179 44 1 6.7952 -3.1367 0.7168 45 1 6.1763 -1.5207 1.1334 46 1 4.4371 -1.4243 2.9090 47 1 7.4476 -3.4384 3.0655 48 1 6.7381 -1.8918 3.5881 49 1 4.3305 -2.9013 5.5491 50 1 5.6847 -3.1138 6.6846 51 1 5.6659 -1.7246 5.5719 52 1 3.9874 -5.5849 6.9520 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001507683424.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 01:06:00 Heat of formation + Delta-G solvation = -106.876890 kcal Electronic energy + Delta-G solvation = -32298.671833 eV Core-core repulsion = 28105.649134 eV Total energy + Delta-G solvation = -4193.022699 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.12754 -40.41274 -38.72398 -37.27333 -36.76398 -36.33509 -35.59335 -33.26037 -31.45602 -30.99790 -29.33250 -28.14828 -28.00475 -27.75283 -26.52327 -23.99121 -23.39595 -23.10354 -22.16314 -20.71822 -19.59694 -18.77262 -18.52659 -17.81890 -17.52313 -16.97454 -16.72679 -16.61410 -16.30211 -15.99189 -15.75259 -15.43712 -15.21111 -14.89287 -14.78131 -14.72108 -14.50174 -14.37948 -14.07825 -13.78894 -13.60373 -13.55580 -13.19376 -13.05415 -13.02862 -12.85015 -12.75375 -12.67601 -12.57907 -12.47969 -12.22581 -12.14499 -12.08184 -12.01405 -11.97601 -11.93883 -11.75977 -11.16797 -10.90513 -10.56693 -10.54697 -9.70923 -9.50547 -8.65975 -7.78472 -5.26778 1.46814 1.49860 1.52915 1.56290 1.63915 1.83175 2.22694 2.53020 3.26508 3.33116 3.38980 3.60758 3.67210 3.80255 3.94835 4.01172 4.07929 4.15455 4.18641 4.30385 4.31837 4.37786 4.51125 4.55514 4.63298 4.67259 4.71696 4.73578 4.78113 4.84920 4.86263 4.87095 4.90142 4.96067 5.01722 5.05339 5.07021 5.15685 5.28884 5.32825 5.35152 5.56381 5.59896 5.65642 5.80031 6.16580 6.35097 6.47577 7.00284 7.13373 7.17582 7.26408 7.90798 8.36009 9.24620 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.017768 B = 0.002816 C = 0.002667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1575.527375 B = 9939.079963 C =10495.019090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.158 3.842 3 C -0.146 4.146 4 N -0.597 5.597 5 C 0.505 3.495 6 O -0.573 6.573 7 C -0.145 4.145 8 C -0.109 4.109 9 C 0.110 3.890 10 H 0.120 0.880 11 C 0.506 3.494 12 O -0.558 6.558 13 N -0.602 5.602 14 C 0.063 3.937 15 C 0.096 3.904 16 C 0.084 3.916 17 H 0.065 0.935 18 O -0.563 6.563 19 C 0.121 3.879 20 N -0.610 5.610 21 C 0.188 3.812 22 C -0.264 4.264 23 H 0.077 0.923 24 C -0.056 4.056 25 N -0.938 5.938 26 Si 0.969 3.031 27 H -0.279 1.279 28 H -0.300 1.300 29 H -0.271 1.271 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.116 0.884 38 H 0.132 0.868 39 H 0.086 0.914 40 H 0.141 0.859 41 H 0.092 0.908 42 H 0.070 0.930 43 H 0.087 0.913 44 H 0.109 0.891 45 H 0.077 0.923 46 H 0.366 0.634 47 H 0.066 0.934 48 H 0.055 0.945 49 H 0.000 1.000 50 H 0.011 0.989 51 H 0.020 0.980 52 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.188 3.890 -22.390 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.055 3.945 3 C -0.204 4.204 4 N -0.329 5.329 5 C 0.294 3.706 6 O -0.453 6.453 7 C -0.184 4.184 8 C -0.147 4.147 9 C 0.002 3.998 10 H 0.138 0.862 11 C 0.293 3.707 12 O -0.436 6.436 13 N -0.334 5.334 14 C -0.078 4.078 15 C -0.028 4.028 16 C 0.021 3.979 17 H 0.083 0.917 18 O -0.368 6.368 19 C -0.006 4.006 20 N -0.333 5.333 21 C 0.043 3.957 22 C -0.394 4.394 23 H 0.095 0.905 24 C -0.251 4.251 25 N -0.585 5.585 26 Si 0.797 3.203 27 H -0.205 1.205 28 H -0.226 1.226 29 H -0.196 1.196 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.074 0.926 33 H 0.100 0.900 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.134 0.866 38 H 0.150 0.850 39 H 0.104 0.896 40 H 0.159 0.841 41 H 0.111 0.889 42 H 0.089 0.911 43 H 0.106 0.894 44 H 0.127 0.873 45 H 0.096 0.904 46 H 0.213 0.787 47 H 0.084 0.916 48 H 0.073 0.927 49 H 0.019 0.981 50 H 0.030 0.970 51 H 0.039 0.961 52 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -0.886 4.288 -22.022 22.453 hybrid contribution 0.126 -0.287 1.236 1.275 sum -0.760 4.001 -20.786 21.182 Atomic orbital electron populations 1.22143 0.94728 1.02208 1.02736 1.20853 0.93448 0.93263 0.86900 1.21933 1.01169 0.95612 1.01640 1.48317 1.49614 1.28524 1.06480 1.21669 0.79910 0.84632 0.84343 1.90668 1.41582 1.31076 1.81950 1.22433 0.99563 0.98872 0.97554 1.22790 0.98301 1.05141 0.88417 1.21855 0.91093 0.89480 0.97335 0.86249 1.20908 0.82910 0.83067 0.83802 1.90655 1.73635 1.30292 1.49006 1.47740 1.29410 1.17917 1.38373 1.22252 1.04223 0.85157 0.96210 1.22144 0.90297 1.02674 0.87693 1.22933 0.87492 0.94899 0.92598 0.91666 1.86588 1.36295 1.23199 1.90736 1.21653 0.95939 0.96953 0.86061 1.44037 1.66693 1.07967 1.14567 1.20403 0.94448 0.89917 0.90921 1.19556 1.10276 0.87604 1.21935 0.90538 1.25849 0.95780 1.01594 1.01865 1.70286 1.14678 1.39252 1.34248 0.85322 0.76978 0.80126 0.77878 1.20480 1.22637 1.19634 0.92341 0.90667 0.92629 0.89964 0.93374 0.91320 0.92973 0.86618 0.85040 0.89561 0.84052 0.88927 0.91149 0.89431 0.87272 0.90447 0.78724 0.91555 0.92698 0.98136 0.97037 0.96109 0.94651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.88 9.19 71.98 0.66 -3.22 16 2 C 0.16 4.17 2.38 44.99 0.11 4.28 16 3 C -0.15 -4.00 9.03 71.98 0.65 -3.35 16 4 N -0.60 -13.58 2.58 -774.49 -2.00 -15.58 16 5 C 0.50 11.50 7.41 87.90 0.65 12.15 16 6 O -0.57 -17.66 15.12 -3.04 -0.05 -17.71 16 7 C -0.14 -1.59 6.86 30.59 0.21 -1.38 16 8 C -0.11 -0.90 5.47 31.65 0.17 -0.73 16 9 C 0.11 1.84 2.79 44.70 0.12 1.97 16 10 H 0.12 1.67 7.32 -2.39 -0.02 1.65 16 11 C 0.51 11.65 6.24 87.66 0.55 12.20 16 12 O -0.56 -16.86 11.31 5.28 0.06 -16.80 16 13 N -0.60 -11.98 2.83 -846.76 -2.39 -14.37 16 14 C 0.06 0.71 9.02 127.77 1.15 1.87 16 15 C 0.10 2.24 5.15 86.38 0.44 2.69 16 16 C 0.08 2.83 3.48 30.59 0.11 2.94 16 17 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 18 O -0.56 -22.17 11.70 -140.65 -1.65 -23.82 16 19 C 0.12 4.50 5.37 86.38 0.46 4.97 16 20 N -0.61 -30.22 2.89 -726.95 -2.10 -32.32 16 21 C 0.19 9.69 8.61 127.77 1.10 10.79 16 22 C -0.26 -14.16 9.67 84.03 0.81 -13.35 16 23 H 0.08 3.86 7.85 -2.91 -0.02 3.84 16 24 C -0.06 -3.13 5.12 84.86 0.43 -2.70 16 25 N -0.94 -56.69 10.61 21.65 0.23 -56.46 16 26 Si 0.97 44.56 29.57 68.60 2.03 46.59 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 28 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 29 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 30 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.07 1.65 8.14 -2.39 -0.02 1.64 16 32 H 0.05 1.49 6.75 -2.39 -0.02 1.48 16 33 H 0.08 2.48 6.57 -2.39 -0.02 2.46 16 34 H 0.05 1.42 6.82 -2.39 -0.02 1.40 16 35 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.05 1.57 7.04 -2.39 -0.02 1.55 16 37 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.09 0.80 7.91 -2.39 -0.02 0.78 16 40 H 0.14 0.06 7.16 -2.38 -0.02 0.04 16 41 H 0.09 0.45 7.91 -2.39 -0.02 0.43 16 42 H 0.07 0.94 8.07 -2.38 -0.02 0.92 16 43 H 0.09 0.69 5.97 -2.38 -0.01 0.67 16 44 H 0.11 1.96 8.07 -2.39 -0.02 1.94 16 45 H 0.08 1.92 7.42 -2.38 -0.02 1.91 16 46 H 0.37 13.35 8.45 -74.06 -0.63 12.72 16 47 H 0.07 2.24 8.03 -2.39 -0.02 2.22 16 48 H 0.05 1.87 7.86 -2.39 -0.02 1.86 16 49 H 0.00 0.02 7.43 -2.39 -0.02 0.00 16 50 H 0.01 0.61 7.20 -2.39 -0.02 0.60 16 51 H 0.02 0.92 7.85 -2.39 -0.02 0.90 16 52 H 0.24 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -79.41 402.57 2.06 -77.35 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: 0.29 Total: 24.01 kcal Atomic # 6 Polarization: 21.47 SS G_CDS: 7.64 Total: 29.11 kcal Atomic # 7 Polarization: -112.47 SS G_CDS: -6.26 Total: -118.73 kcal Atomic # 8 Polarization: -56.69 SS G_CDS: -1.63 Total: -58.33 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -79.41 2.06 -77.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001507683424.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.528 kcal (2) G-P(sol) polarization free energy of solvation -79.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds