Wall clock time and date at job start Wed Apr 1 2020 00:56:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 H 1.09008 * 109.46882 * 55.00145 * 3 2 1 5 5 O 1.42902 * 109.47360 * 295.00266 * 3 2 1 6 6 C 1.42897 * 114.00011 * 149.99452 * 5 3 2 7 7 C 1.50696 * 109.47439 * 175.00107 * 3 2 1 8 8 O 1.21280 * 120.00232 * 115.00026 * 7 3 2 9 9 N 1.34776 * 120.00133 * 295.00613 * 7 3 2 10 10 C 1.46496 * 120.00390 * 179.97438 * 9 7 3 11 11 C 1.53000 * 109.47631 * 154.99604 * 10 9 7 12 12 C 1.52997 * 109.47060 * 59.99933 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46898 * 109.47548 * 179.97438 * 13 12 11 15 15 C 1.46900 * 111.00190 * 275.00196 * 14 13 12 16 16 C 1.50698 * 109.47212 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99984 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00114 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00276 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00223 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00210 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99769 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47286 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47149 * 120.00053 * 23 21 19 26 26 H 1.48511 * 109.46832 * 239.99888 * 23 21 19 27 27 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 28 28 C 1.52997 * 109.47452 * 59.99536 * 27 13 12 29 29 H 1.09004 * 109.47140 * 299.99607 * 1 2 3 30 30 H 1.08995 * 109.47243 * 59.99705 * 1 2 3 31 31 H 1.09004 * 109.46588 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47276 * 240.00681 * 2 1 3 33 33 H 1.08998 * 109.47713 * 119.99721 * 2 1 3 34 34 H 1.08998 * 109.47277 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47873 * 300.00369 * 6 5 3 36 36 H 1.09007 * 109.47148 * 60.00473 * 6 5 3 37 37 H 0.97001 * 120.00215 * 359.97438 * 9 7 3 38 38 H 1.09004 * 109.47374 * 34.99626 * 10 9 7 39 39 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47194 * 300.00282 * 11 10 9 41 41 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 43 43 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 44 44 H 1.00903 * 110.99927 * 151.04503 * 14 13 12 45 45 H 1.09002 * 109.47391 * 299.99994 * 15 14 13 46 46 H 1.09005 * 109.46934 * 60.00097 * 15 14 13 47 47 H 0.97004 * 119.99984 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99755 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.46935 * 299.99411 * 27 13 12 50 50 H 1.09001 * 109.46812 * 179.97438 * 27 13 12 51 51 H 1.08993 * 109.47194 * 179.97438 * 28 27 13 52 52 H 1.09002 * 109.46695 * 59.99734 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 1.4556 3.4903 -1.1002 7 6 3.5418 1.4445 0.1238 8 8 4.2249 1.8613 -0.7875 9 7 4.1260 0.9829 1.2472 10 6 5.5860 0.9843 1.3674 11 6 5.9761 1.0269 2.8463 12 6 5.4068 -0.2012 3.5594 13 6 5.9723 -1.4705 2.9192 14 7 5.4263 -2.6496 3.6043 15 6 6.2154 -2.9766 4.7995 16 6 5.6262 -4.1882 5.4746 17 8 4.6456 -4.7267 5.0059 18 7 6.1894 -4.6740 6.5984 19 6 5.6537 -5.7766 7.2123 20 1 4.7800 -6.2557 6.7955 21 6 6.2340 -6.2772 8.3714 22 7 7.2967 -5.6940 8.8788 23 14 5.5044 -7.7800 9.2074 24 1 4.3198 -8.2457 8.4425 25 1 6.5204 -8.8621 9.2549 26 1 5.0928 -7.4263 10.5898 27 6 5.5824 -1.5131 1.4403 28 6 6.1516 -0.2850 0.7271 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1720 3.9005 -2.0694 35 1 0.6616 3.6808 -0.3782 36 1 2.3766 3.9646 -0.7608 37 1 3.5797 0.6498 1.9763 38 1 5.9916 1.8592 0.8594 39 1 7.0624 1.0284 2.9356 40 1 5.5731 1.9312 3.3024 41 1 5.6843 -0.1707 4.6131 42 1 4.3205 -0.2022 3.4701 43 1 7.0587 -1.4695 3.0086 44 1 5.3737 -3.4394 2.9785 45 1 7.2448 -3.1867 4.5090 46 1 6.1975 -2.1323 5.4888 47 1 6.9738 -4.2436 6.9730 48 1 7.7016 -6.0432 9.6881 49 1 4.4960 -1.5141 1.3509 50 1 5.9856 -2.4172 0.9842 51 1 5.8742 -0.3156 -0.3264 52 1 7.2379 -0.2840 0.8166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001566981943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:31 Heat of formation + Delta-G solvation = -137.151672 kcal Electronic energy + Delta-G solvation = -30475.100679 eV Core-core repulsion = 26280.765167 eV Total energy + Delta-G solvation = -4194.335512 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.70752 -39.14860 -38.17697 -37.40165 -35.26352 -34.13065 -33.84657 -32.50924 -31.23535 -31.03042 -29.35430 -27.98009 -26.46306 -25.88951 -24.03416 -22.83602 -22.62592 -21.57408 -20.93050 -19.45359 -19.09536 -18.00841 -17.88456 -17.26148 -16.38113 -15.97008 -15.71496 -15.35858 -15.24983 -15.11063 -14.74192 -14.51276 -14.38001 -14.21414 -13.91626 -13.88533 -13.76921 -13.43885 -12.88649 -12.78425 -12.76852 -12.42666 -12.31814 -12.09645 -12.06319 -11.86382 -11.64157 -11.53524 -11.47401 -11.30030 -11.12999 -11.09735 -10.88844 -10.81467 -10.56759 -10.35951 -10.30044 -10.21975 -9.53470 -9.51238 -9.23486 -8.45888 -8.08061 -7.97316 -6.43379 -3.84113 2.35810 2.81345 3.14977 3.25631 3.32862 3.44129 3.89455 4.04922 4.26021 4.32823 4.50316 4.51986 4.53428 4.60746 4.88160 4.91661 4.94618 4.97451 5.03970 5.08794 5.13942 5.18150 5.24382 5.29947 5.33184 5.35878 5.37465 5.40672 5.45595 5.65993 5.66459 5.74267 5.76027 5.81987 5.88585 5.95455 5.98596 5.99030 6.03122 6.14542 6.20399 6.29932 6.33463 6.65492 7.25165 7.27731 7.53905 7.66590 7.99877 8.05212 8.59752 9.16555 9.53018 10.04389 10.74440 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.001992 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.581314 B =14052.897780 C =15008.897411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.118 4.118 3 C 0.074 3.926 4 H 0.085 0.915 5 O -0.356 6.356 6 C 0.029 3.971 7 C 0.490 3.510 8 O -0.529 6.529 9 N -0.719 5.719 10 C 0.147 3.853 11 C -0.127 4.127 12 C -0.109 4.109 13 C 0.087 3.913 14 N -0.665 5.665 15 C 0.051 3.949 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.565 5.565 19 C -0.298 4.298 20 H 0.103 0.897 21 C 0.021 3.979 22 N -0.902 5.902 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.118 4.118 28 C -0.127 4.127 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.078 0.922 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.042 0.958 36 H 0.043 0.957 37 H 0.402 0.598 38 H 0.086 0.914 39 H 0.078 0.922 40 H 0.069 0.931 41 H 0.068 0.932 42 H 0.067 0.933 43 H 0.042 0.958 44 H 0.350 0.650 45 H 0.042 0.958 46 H 0.084 0.916 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.071 0.929 50 H 0.062 0.938 51 H 0.069 0.931 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.903 18.317 -15.083 24.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.155 4.155 3 C 0.012 3.988 4 H 0.103 0.897 5 O -0.273 6.273 6 C -0.067 4.067 7 C 0.275 3.725 8 O -0.404 6.404 9 N -0.374 5.374 10 C 0.042 3.958 11 C -0.166 4.166 12 C -0.147 4.147 13 C -0.023 4.023 14 N -0.298 5.298 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.428 4.428 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.543 5.543 23 Si 0.756 3.244 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.156 4.156 28 C -0.166 4.166 29 H 0.073 0.927 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.107 0.893 35 H 0.061 0.939 36 H 0.062 0.938 37 H 0.238 0.762 38 H 0.104 0.896 39 H 0.097 0.903 40 H 0.088 0.912 41 H 0.087 0.913 42 H 0.085 0.915 43 H 0.060 0.940 44 H 0.170 0.830 45 H 0.060 0.940 46 H 0.103 0.897 47 H 0.225 0.775 48 H 0.081 0.919 49 H 0.090 0.910 50 H 0.081 0.919 51 H 0.087 0.913 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.463 18.456 -15.726 25.094 hybrid contribution 0.924 -0.809 1.045 1.613 sum -5.539 17.647 -14.681 23.614 Atomic orbital electron populations 1.21723 0.94295 1.02406 1.02257 1.21607 0.97482 0.92540 1.03901 1.22155 0.90736 0.96686 0.89236 0.89689 1.87995 1.88053 1.20826 1.30418 1.22851 0.99689 0.81437 1.02733 1.21415 0.91266 0.77426 0.82368 1.90701 1.65086 1.46036 1.38610 1.46221 1.07840 1.64692 1.18643 1.20948 0.79785 0.98679 0.96366 1.21855 1.02017 0.98887 0.93795 1.21541 1.00786 0.92664 0.99718 1.21542 0.96700 0.91436 0.92656 1.60097 1.53163 1.07779 1.08756 1.21714 0.94710 0.98177 0.93567 1.19834 0.86896 0.86976 0.83674 1.90522 1.28039 1.62027 1.66162 1.41878 1.28210 1.27462 1.22570 1.19753 1.12183 1.04658 1.06213 0.87874 1.25270 0.96190 0.99473 0.97095 1.69620 1.21030 1.41270 1.22407 0.85802 0.78967 0.80676 0.78907 1.19212 1.20775 1.20748 1.21663 1.01981 0.97759 0.94215 1.21881 1.00501 0.94185 1.00024 0.92687 0.91880 0.91939 0.90333 0.89763 0.89270 0.93946 0.93789 0.76210 0.89618 0.90324 0.91181 0.91345 0.91453 0.93957 0.83023 0.93984 0.89738 0.77491 0.91933 0.90989 0.91913 0.91270 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.81 37.16 0.36 -0.67 16 2 C -0.12 -0.92 5.61 -26.73 -0.15 -1.07 16 3 C 0.07 0.63 2.51 -27.88 -0.07 0.56 16 4 H 0.09 0.54 7.79 -51.92 -0.40 0.14 16 5 O -0.36 -3.68 9.42 -55.09 -0.52 -4.20 16 6 C 0.03 0.22 10.81 101.05 1.09 1.31 16 7 C 0.49 5.18 7.10 -10.99 -0.08 5.10 16 8 O -0.53 -7.67 16.17 -14.30 -0.23 -7.90 16 9 N -0.72 -6.14 4.13 -53.81 -0.22 -6.36 16 10 C 0.15 1.29 2.78 -67.93 -0.19 1.11 16 11 C -0.13 -0.99 5.61 -26.73 -0.15 -1.14 16 12 C -0.11 -1.06 5.25 -26.73 -0.14 -1.20 16 13 C 0.09 0.98 2.49 -67.71 -0.17 0.81 16 14 N -0.67 -10.08 5.93 -107.99 -0.64 -10.72 16 15 C 0.05 0.87 5.96 -4.98 -0.03 0.84 16 16 C 0.44 10.23 7.82 -10.99 -0.09 10.14 16 17 O -0.58 -15.61 15.78 5.54 0.09 -15.53 16 18 N -0.56 -14.16 5.29 -10.96 -0.06 -14.22 16 19 C -0.30 -8.27 9.68 -14.93 -0.14 -8.42 16 20 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 21 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 22 N -0.90 -24.37 13.05 55.50 0.72 -23.65 16 23 Si 0.93 20.91 29.55 -169.99 -5.02 15.89 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 27 C -0.12 -1.20 5.04 -26.73 -0.13 -1.34 16 28 C -0.13 -1.19 5.60 -26.73 -0.15 -1.34 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.47 7.82 -51.93 -0.41 0.06 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 0.58 7.77 -51.93 -0.40 0.18 16 34 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.04 0.24 8.08 -51.93 -0.42 -0.18 16 36 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.40 2.87 6.57 -40.82 -0.27 2.60 16 38 H 0.09 0.85 7.58 -51.93 -0.39 0.46 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.07 0.73 7.45 -51.93 -0.39 0.34 16 42 H 0.07 0.66 6.51 -51.93 -0.34 0.32 16 43 H 0.04 0.48 7.80 -51.93 -0.40 0.07 16 44 H 0.35 5.61 8.05 -39.29 -0.32 5.30 16 45 H 0.04 0.66 8.05 -51.93 -0.42 0.24 16 46 H 0.08 1.33 7.44 -51.93 -0.39 0.94 16 47 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 48 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 49 H 0.07 0.76 7.60 -51.93 -0.39 0.36 16 50 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 51 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 52 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 LS Contribution 415.51 15.07 6.26 6.26 Total: -1.00 -33.45 415.51 -8.75 -42.20 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -9.00 Total: 13.06 kcal Atomic # 6 Polarization: 5.30 SS G_CDS: -0.13 Total: 5.17 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.20 Total: -54.95 kcal Atomic # 8 Polarization: -26.96 SS G_CDS: -0.66 Total: -27.63 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.45 -8.75 -42.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566981943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.948 kcal (2) G-P(sol) polarization free energy of solvation -33.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds