Wall clock time and date at job start Wed Apr 1 2020 00:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.46851 * 2 1 4 4 H 1.09008 * 109.46882 * 55.00145 * 3 2 1 5 5 O 1.42902 * 109.47360 * 295.00266 * 3 2 1 6 6 C 1.42897 * 114.00011 * 149.99452 * 5 3 2 7 7 C 1.50696 * 109.47439 * 175.00107 * 3 2 1 8 8 O 1.21280 * 120.00232 * 115.00026 * 7 3 2 9 9 N 1.34776 * 120.00133 * 295.00613 * 7 3 2 10 10 C 1.46496 * 120.00390 * 179.97438 * 9 7 3 11 11 C 1.53000 * 109.47631 * 154.99604 * 10 9 7 12 12 C 1.52997 * 109.47060 * 59.99933 * 11 10 9 13 13 C 1.52999 * 109.47317 * 59.99960 * 12 11 10 14 14 N 1.46898 * 109.47548 * 179.97438 * 13 12 11 15 15 C 1.46900 * 111.00190 * 275.00196 * 14 13 12 16 16 C 1.50698 * 109.47212 * 179.97438 * 15 14 13 17 17 O 1.21295 * 119.99984 * 0.02562 * 16 15 14 18 18 N 1.34771 * 120.00114 * 179.97438 * 16 15 14 19 19 C 1.37095 * 120.00276 * 180.02562 * 18 16 15 20 20 H 1.08001 * 120.00223 * 359.97438 * 19 18 16 21 21 C 1.38956 * 120.00210 * 180.02562 * 19 18 16 22 22 N 1.31411 * 119.99769 * 359.97438 * 21 19 18 23 23 Si 1.86799 * 119.99897 * 180.02562 * 21 19 18 24 24 H 1.48504 * 109.47286 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.47149 * 120.00053 * 23 21 19 26 26 H 1.48511 * 109.46832 * 239.99888 * 23 21 19 27 27 C 1.53005 * 109.47159 * 300.00546 * 13 12 11 28 28 C 1.52997 * 109.47452 * 59.99536 * 27 13 12 29 29 H 1.09004 * 109.47140 * 299.99607 * 1 2 3 30 30 H 1.08995 * 109.47243 * 59.99705 * 1 2 3 31 31 H 1.09004 * 109.46588 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47276 * 240.00681 * 2 1 3 33 33 H 1.08998 * 109.47713 * 119.99721 * 2 1 3 34 34 H 1.08998 * 109.47277 * 179.97438 * 6 5 3 35 35 H 1.08997 * 109.47873 * 300.00369 * 6 5 3 36 36 H 1.09007 * 109.47148 * 60.00473 * 6 5 3 37 37 H 0.97001 * 120.00215 * 359.97438 * 9 7 3 38 38 H 1.09004 * 109.47374 * 34.99626 * 10 9 7 39 39 H 1.09002 * 109.47398 * 180.02562 * 11 10 9 40 40 H 1.09001 * 109.47194 * 300.00282 * 11 10 9 41 41 H 1.08996 * 109.47853 * 180.02562 * 12 11 10 42 42 H 1.09002 * 109.47153 * 300.00319 * 12 11 10 43 43 H 1.09002 * 109.46716 * 60.00091 * 13 12 11 44 44 H 1.00903 * 110.99927 * 151.04503 * 14 13 12 45 45 H 1.09002 * 109.47391 * 299.99994 * 15 14 13 46 46 H 1.09005 * 109.46934 * 60.00097 * 15 14 13 47 47 H 0.97004 * 119.99984 * 0.02562 * 18 16 15 48 48 H 0.96997 * 119.99755 * 179.97438 * 22 21 19 49 49 H 1.09002 * 109.46935 * 299.99411 * 27 13 12 50 50 H 1.09001 * 109.46812 * 179.97438 * 27 13 12 51 51 H 1.08993 * 109.47194 * 179.97438 * 28 27 13 52 52 H 1.09002 * 109.46695 * 59.99734 * 28 27 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6053 1.9816 0.8419 5 8 1.6618 2.0815 -1.2210 6 6 1.4556 3.4903 -1.1002 7 6 3.5418 1.4445 0.1238 8 8 4.2249 1.8613 -0.7875 9 7 4.1260 0.9829 1.2472 10 6 5.5860 0.9843 1.3674 11 6 5.9761 1.0269 2.8463 12 6 5.4068 -0.2012 3.5594 13 6 5.9723 -1.4705 2.9192 14 7 5.4263 -2.6496 3.6043 15 6 6.2154 -2.9766 4.7995 16 6 5.6262 -4.1882 5.4746 17 8 4.6456 -4.7267 5.0059 18 7 6.1894 -4.6740 6.5984 19 6 5.6537 -5.7766 7.2123 20 1 4.7800 -6.2557 6.7955 21 6 6.2340 -6.2772 8.3714 22 7 7.2967 -5.6940 8.8788 23 14 5.5044 -7.7800 9.2074 24 1 4.3198 -8.2457 8.4425 25 1 6.5204 -8.8621 9.2549 26 1 5.0928 -7.4263 10.5898 27 6 5.5824 -1.5131 1.4403 28 6 6.1516 -0.2850 0.7271 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1720 3.9005 -2.0694 35 1 0.6616 3.6808 -0.3782 36 1 2.3766 3.9646 -0.7608 37 1 3.5797 0.6498 1.9763 38 1 5.9916 1.8592 0.8594 39 1 7.0624 1.0284 2.9356 40 1 5.5731 1.9312 3.3024 41 1 5.6843 -0.1707 4.6131 42 1 4.3205 -0.2022 3.4701 43 1 7.0587 -1.4695 3.0086 44 1 5.3737 -3.4394 2.9785 45 1 7.2448 -3.1867 4.5090 46 1 6.1975 -2.1323 5.4888 47 1 6.9738 -4.2436 6.9730 48 1 7.7016 -6.0432 9.6881 49 1 4.4960 -1.5141 1.3509 50 1 5.9856 -2.4172 0.9842 51 1 5.8742 -0.3156 -0.3264 52 1 7.2379 -0.2840 0.8166 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001566981943.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:56:30 Heat of formation + Delta-G solvation = -161.117649 kcal Electronic energy + Delta-G solvation = -30476.139922 eV Core-core repulsion = 26280.765167 eV Total energy + Delta-G solvation = -4195.374755 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 341.215 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.50810 -40.28543 -39.63747 -38.27043 -36.43124 -35.79971 -34.77111 -33.47431 -33.18436 -31.80821 -30.35377 -28.70344 -27.69381 -26.85569 -25.63524 -23.65604 -23.30066 -22.45272 -21.69220 -21.06145 -20.13177 -19.85549 -18.74095 -17.98020 -17.85822 -16.86469 -16.75608 -16.54064 -16.35392 -16.07812 -16.03741 -15.81335 -15.56079 -15.16719 -15.07925 -14.88236 -14.60804 -14.41080 -14.25447 -13.81399 -13.54373 -13.43404 -13.31168 -13.18198 -13.06497 -12.97475 -12.91107 -12.78038 -12.46884 -12.39701 -12.11335 -12.06647 -12.06332 -11.75283 -11.73478 -11.56238 -11.51003 -11.39667 -11.12380 -10.31559 -10.28990 -10.02800 -10.00494 -9.29174 -8.46248 -5.94662 1.37026 1.42492 1.55197 1.56495 2.06625 2.10303 2.29622 2.80727 2.92120 3.21307 3.49486 3.62924 3.76346 3.81450 3.89478 3.93631 4.09669 4.15341 4.27683 4.33513 4.34096 4.43107 4.49774 4.50182 4.51297 4.53246 4.55905 4.58380 4.61985 4.68867 4.80962 4.84296 4.94893 5.04547 5.09884 5.11278 5.15303 5.21641 5.25435 5.31160 5.40624 5.41851 5.44678 5.57182 5.93991 6.02269 6.17040 6.44366 6.55740 6.61105 7.13705 7.23084 7.57669 8.12913 8.71331 Molecular weight = 341.21amu Principal moments of inertia in cm(-1) A = 0.018593 B = 0.001992 C = 0.001865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1505.581314 B =14052.897780 C =15008.897411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C 0.074 3.926 4 H 0.112 0.888 5 O -0.381 6.381 6 C 0.025 3.975 7 C 0.488 3.512 8 O -0.574 6.574 9 N -0.707 5.707 10 C 0.147 3.853 11 C -0.115 4.115 12 C -0.107 4.107 13 C 0.089 3.911 14 N -0.675 5.675 15 C 0.066 3.934 16 C 0.438 3.562 17 O -0.623 6.623 18 N -0.574 5.574 19 C -0.332 4.332 20 H 0.079 0.921 21 C -0.014 4.014 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.271 1.271 27 C -0.111 4.111 28 C -0.120 4.120 29 H 0.068 0.932 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.060 0.940 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.033 0.967 37 H 0.411 0.589 38 H 0.077 0.923 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.065 0.935 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.342 0.658 45 H 0.062 0.938 46 H 0.104 0.896 47 H 0.396 0.604 48 H 0.277 0.723 49 H 0.067 0.933 50 H 0.058 0.942 51 H 0.051 0.949 52 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.917 19.180 -14.128 24.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.153 4.153 3 C 0.013 3.987 4 H 0.130 0.870 5 O -0.299 6.299 6 C -0.071 4.071 7 C 0.275 3.725 8 O -0.453 6.453 9 N -0.362 5.362 10 C 0.043 3.957 11 C -0.153 4.153 12 C -0.145 4.145 13 C -0.020 4.020 14 N -0.308 5.308 15 C -0.066 4.066 16 C 0.226 3.774 17 O -0.509 6.509 18 N -0.212 5.212 19 C -0.462 4.462 20 H 0.097 0.903 21 C -0.214 4.214 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.198 1.198 25 H -0.197 1.197 26 H -0.196 1.196 27 C -0.149 4.149 28 C -0.159 4.159 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.112 0.888 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.249 0.751 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.102 0.898 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.068 0.932 44 H 0.161 0.839 45 H 0.080 0.920 46 H 0.122 0.878 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.070 0.930 52 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -6.464 19.340 -14.745 25.164 hybrid contribution 0.927 -1.052 0.700 1.567 sum -5.537 18.288 -14.044 23.714 Atomic orbital electron populations 1.21699 0.93410 1.02626 1.02608 1.21605 0.98201 0.92028 1.03464 1.22280 0.89376 0.97315 0.89716 0.87007 1.87963 1.88074 1.22206 1.31611 1.22992 0.99939 0.80159 1.03976 1.21832 0.92069 0.76580 0.82021 1.90678 1.66167 1.48223 1.40186 1.46163 1.07967 1.63719 1.18340 1.20948 0.79784 0.97926 0.97087 1.21776 1.02678 0.98437 0.92405 1.21527 1.00903 0.92521 0.99540 1.21633 0.97114 0.90418 0.92826 1.60139 1.53575 1.08571 1.08488 1.21567 0.95221 0.95587 0.94221 1.20920 0.85967 0.87829 0.82718 1.90491 1.29826 1.63615 1.66980 1.41949 1.28569 1.27304 1.23345 1.19694 1.12505 1.06372 1.07588 0.90341 1.26036 0.96384 1.01884 0.97072 1.69675 1.21487 1.42228 1.22746 0.84880 0.78135 0.77432 0.77943 1.19791 1.19688 1.19618 1.21582 1.01688 0.97988 0.93656 1.21810 1.01214 0.94044 0.98848 0.91298 0.92530 0.91802 0.92160 0.88811 0.88456 0.91646 0.94824 0.75145 0.90489 0.89217 0.89806 0.91671 0.91405 0.93177 0.83860 0.91992 0.87796 0.77000 0.91338 0.91458 0.92295 0.93009 0.89876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.81 71.98 0.71 -1.13 16 2 C -0.12 -1.71 5.61 30.60 0.17 -1.54 16 3 C 0.07 1.21 2.51 29.85 0.08 1.28 16 4 H 0.11 1.18 7.79 -2.38 -0.02 1.16 16 5 O -0.38 -7.71 9.42 -129.99 -1.22 -8.94 16 6 C 0.03 0.36 10.81 113.37 1.23 1.59 16 7 C 0.49 10.07 7.10 87.66 0.62 10.70 16 8 O -0.57 -16.86 16.17 15.96 0.26 -16.60 16 9 N -0.71 -11.15 4.13 -442.54 -1.83 -12.98 16 10 C 0.15 2.37 2.78 44.99 0.13 2.50 16 11 C -0.11 -1.48 5.61 30.59 0.17 -1.31 16 12 C -0.11 -1.81 5.25 30.59 0.16 -1.65 16 13 C 0.09 1.83 2.49 44.92 0.11 1.94 16 14 N -0.68 -19.55 5.93 -495.57 -2.94 -22.49 16 15 C 0.07 2.16 5.96 85.56 0.51 2.67 16 16 C 0.44 20.33 7.82 87.66 0.69 21.01 16 17 O -0.62 -33.84 15.78 -3.08 -0.05 -33.89 16 18 N -0.57 -29.00 5.29 -306.99 -1.62 -30.62 16 19 C -0.33 -18.67 9.68 84.04 0.81 -17.86 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 22 N -0.92 -49.13 13.05 21.66 0.28 -48.85 16 23 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 24 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 26 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 27 C -0.11 -2.12 5.04 30.60 0.15 -1.97 16 28 C -0.12 -2.12 5.60 30.59 0.17 -1.95 16 29 H 0.07 0.67 8.14 -2.38 -0.02 0.66 16 30 H 0.06 0.79 7.82 -2.39 -0.02 0.77 16 31 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.09 1.18 7.77 -2.39 -0.02 1.16 16 34 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.07 0.61 8.08 -2.39 -0.02 0.59 16 36 H 0.03 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.41 5.07 6.57 -92.71 -0.61 4.46 16 38 H 0.08 1.45 7.58 -2.39 -0.02 1.43 16 39 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 41 H 0.06 1.19 7.45 -2.39 -0.02 1.18 16 42 H 0.07 1.15 6.51 -2.39 -0.02 1.14 16 43 H 0.05 0.99 7.80 -2.39 -0.02 0.97 16 44 H 0.34 10.78 8.05 -89.69 -0.72 10.06 16 45 H 0.06 1.80 8.05 -2.39 -0.02 1.78 16 46 H 0.10 3.02 7.44 -2.38 -0.02 3.00 16 47 H 0.40 18.96 7.90 -92.71 -0.73 18.23 16 48 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 49 H 0.07 1.35 7.60 -2.39 -0.02 1.33 16 50 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 51 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 52 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -73.16 415.51 -0.05 -73.22 By element: Atomic # 1 Polarization: 43.72 SS G_CDS: -1.13 Total: 42.59 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.17 Total: 14.00 kcal Atomic # 7 Polarization: -108.84 SS G_CDS: -6.11 Total: -114.94 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -1.02 Total: -59.43 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -73.16 -0.05 -73.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001566981943.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.902 kcal (2) G-P(sol) polarization free energy of solvation -73.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds